spatstat v1.25-5

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
localK Neighbourhood density function
pool Pool Data
logLik.ppm Log Likelihood and AIC for Point Process Model
methods.rhohat Methods for Intensity Functions of Spatial Covariate
pairwise.family Pairwise Interaction Process Family
quadrats Divide Region into Quadrats
rescale.ppp Convert Point Pattern to Another Unit of Length
linearpcf Linear Pair Correlation Function
msr Signed or Vector-Valued Measure
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
localpcf Local pair correlation function
pixellate Convert Spatial Object to Pixel Image
spokes Spokes pattern of dummy points
plot.splitppp Plot a List of Point Patterns
nnwhich Nearest neighbour
linearKinhom Inhomogeneous Linear K Function
methods.pp3 Methods for three-dimensional point patterns
summary.im Summarizing a Pixel Image
raster.x Cartesian Coordinates for a Pixel Raster
pairdist Pairwise distances
pcf.ppp Pair Correlation Function of Point Pattern
residuals.ppm Residuals for Fitted Point Process Model
nndist.ppx Nearest Neighbour Distances in Any Dimensions
simdat Simulated Point Pattern
localKinhom Inhomogeneous Neighbourhood Density Function
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
plot.ppp plot a Spatial Point Pattern
quantile.im Sample Quantiles of Pixel Image
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
persp.im Perspective Plot of Pixel Image
plot.slrm Plot a Fitted Spatial Logistic Regression
swedishpines Swedish Pines Point Pattern
pp3 Three Dimensional Point Pattern
tess Create a Tessellation
rescale Convert dataset to another unit of length
progressreport Print Progress Reports
quadscheme Generate a Quadrature Scheme from a Point Pattern
markcorr Mark Correlation Function
redwood California Redwoods Point Pattern (Ripley's Subset)
print.ppm Print a Fitted Point Process Model
rMaternII Simulate Matern Model II
unique.ppp Extract Unique Points from a Spatial Point Pattern
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
unmark Remove Marks
marks.psp Marks of a Line Segment Pattern
rmpoispp Generate Multitype Poisson Point Pattern
plot.linim Plot Pixel Image on Linear Network
methods.ppx Methods for Multidimensional Space-Time Point Patterns
plot.colourmap Plot a Colour Map
logLik.slrm Loglikelihood of Spatial Logistic Regression
nbfires Point Patterns of New Brunswick Forest Fires
residualspaper Data and Code From JRSS Discussion Paper on Residuals
reduced.sample Reduced Sample Estimator using Histogram Data
reach Interaction Distance of a Point Process
rstrat Simulate Stratified Random Point Pattern
scan.test Spatial Scan Test
mincontrast Method of Minimum Contrast
methods.boxx Methods for Multi-Dimensional Box
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
npfun Dummy Function Returns Number of Points
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
rpoislpp Poisson Point Process on a Linear Network
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
selfcrossing.psp Crossing Points in a Line Segment Pattern
matchingdist Distance for a Point Pattern Matching
rthin Random Thinning
split.ppp Divide Point Pattern into Sub-patterns
shift.psp Apply Vector Translation To Line Segment Pattern
methods.lppm Methods for Fitted Point Process Models on a Linear Network
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
shift Apply Vector Translation
plot.owin Plot a Spatial Window
unnormdensity Weighted kernel smoother
methods.lpp Methods for Point Patterns on a Linear Network
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
multiplicity.ppp Count Multiplicity of Duplicate Points
shift.im Apply Vector Translation To Pixel Image
pointsOnLines Place Points Evenly Along Specified Lines
periodify Make Periodic Copies of a Spatial Pattern
lpp Create Point Pattern on Linear Network
pairdist.psp Pairwise distances between line segments
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
plot.pp3 Plot a three-dimensional point pattern
rescale.im Convert Pixel Image to Another Unit of Length
Lcross.inhom Inhomogeneous Cross Type L Function
simplenet Simple Example of Linear Network
print.psp Print Brief Details of a Line Segment Pattern Dataset
setcov Set Covariance of a Window
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
vertices Vertices of a Window
psp Create a Line Segment Pattern
plot.msr Plot a Signed or Vector-Valued Measure
which.max.im Identify Pixelwise Maximum of Several Pixel Images
Jmulti Marked J Function
pool.rat Pool Data from Several Ratio Objects
lurking Lurking variable plot
runifpointOnLines Generate N Uniform Random Points On Line Segments
ppm Fit Point Process Model to Data
print.owin Print Brief Details of a Spatial Window
project2segment Move Point To Nearest Line
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
profilepl Profile Maximum Pseudolikelihood
methods.linnet Methods for Linear Networks
rotate.owin Rotate a Window
as.psp Convert Data To Class psp
Kinhom Inhomogeneous K-function
pairdist.lpp Pairwise shortest-path distances between points on a linear network
print.ppp Print Brief Details of a Point Pattern Dataset
quadratcount Quadrat counting for a point pattern
applynbd Apply Function to Every Neighbourhood in a Point Pattern
Lest L-function
quad.object Class of Quadrature Schemes
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
rHardcore Perfect Simulation of the Hardcore Process
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
print.im Print Brief Details of an Image
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
slrm Spatial Logistic Regression
plot.kppm Plot a fitted cluster point process
simplify.owin Approximate a Polygon by a Simpler Polygon
spatstat-internal Internal spatstat functions
print.quad Print a Quadrature Scheme
Kest.fft K-function using FFT
square Square Window
ppm.object Class of Fitted Point Process Models
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
rMaternI Simulate Matern Model I
suffstat Sufficient Statistic of Point Process Model
area.owin Area of a Window
summary.ppm Summarizing a Fitted Point Process Model
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
tile.areas Compute Areas of Tiles in a Tessellation
spruces Spruces Point Pattern
areaLoss Difference of Disc Areas
rescale.owin Convert Window to Another Unit of Length
pairs.im Scatterplot Matrix for Pixel Images
pairdist.ppx Pairwise Distances in Any Dimensions
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
nnwhich.pp3 Nearest neighbours in three dimensions
rhohat Smoothing Estimate of Covariate Transformation
pcfcross Multitype pair correlation function (cross-type)
ganglia Beta Ganglion Cells in Cat Retina, Old Version
plot.fasp Plot a Function Array
rNeymanScott Simulate Neyman-Scott Process
rGaussPoisson Simulate Gauss-Poisson Process
summary.ppp Summary of a Point Pattern Dataset
rknn Theoretical Distribution of Nearest Neighbour Distance
identify.ppp Identify Points in a Point Pattern
plot.fv Plot Function Values
Replace.im Reset Values in Subset of Image
rThomas Simulate Thomas Process
im Create a Pixel Image Object
rPoissonCluster Simulate Poisson Cluster Process
plot.tess Plot a tessellation
pixellate.psp Convert Line Segment Pattern to Pixel Image
coef.ppm Coefficients of Fitted Point Process Model
rgbim Create Colour-Valued Pixel Image
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
as.interact Extract Interaction Structure
smooth.fv Apply Smoothing to Function Values
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
rotate.ppp Rotate a Point Pattern
plot.influence.ppm Plot Influence Measure
markcorrint Mark Correlation Integral
cells Biological Cells Point Pattern
lppm Fit Point Process Model to Point Pattern on Linear Network
rshift.ppp Randomly Shift a Point Pattern
clickjoin Interactively join vertices on a plot
rsyst Simulate systematic random point pattern
murchison Murchison gold deposits
fv.object Function Value Table
runiflpp Uniform Random Points on a Linear Network
predict.kppm Prediction from a Fitted Cluster Point Process Model
ppp Create a Point Pattern
smooth.ppp Spatial smoothing of observations at irregular points
nndist.psp Nearest neighbour distances between line segments
shapley Galaxies in the Shapley Supercluster
whist Weighted Histogram
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
summary.listof Summary of a List of Things
rStrauss Perfect Simulation of the Strauss Process
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
superimpose Superimpose Several Geometric Patterns
hamster Aherne's hamster tumour data
is.owin Test Whether An Object Is A Window
concatxy Concatenate x,y Coordinate Vectors
rpoint Generate N Random Points
zapsmall.im Rounding of Pixel Values
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
shift.ppp Apply Vector Translation To Point Pattern
erosion Morphological Erosion
chop.tess Subdivide a Window or Tessellation using a Set of Lines
eval.im Evaluate Expression Involving Pixel Images
simulate.kppm Simulate a Fitted Cluster Point Process Model
hyperframe Hyper Data Frame
envelope Simulation Envelopes of Summary Function
Tstat Third order summary statistic
areaGain Difference of Disc Areas
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
nztrees New Zealand Trees Point Pattern
opening Morphological Opening
pairsat.family Saturated Pairwise Interaction Point Process Family
anemones Beadlet Anemones Data
plot.envelope Plot a Simulation Envelope
pixelquad Quadrature Scheme Based on Pixel Grid
Kcross.inhom Inhomogeneous Cross K Function
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
default.dummy Generate a Default Pattern of Dummy Points
commonGrid Determine A Common Spatial Domain And Pixel Resolution
fv Create a Function Value Table
linim Create Pixel Image on Linear Network
crossdist.ppp Pairwise distances between two different point patterns
urkiola Urkiola Woods Point Pattern
Jcross Multitype J Function (i-to-j)
Kcom Model Compensator of K Function
chorley Chorley-Ribble Cancer Data
model.frame.ppm Extract the Environment of a Point Process Model
miplot Morishita Index Plot
density.ppp Kernel Smoothed Intensity of Point Pattern
crossing.psp Crossing Points of Two Line Segment Patterns
Gest Nearest Neighbour Distance Function G
model.matrix.ppm Extract Design Matrix from Point Process Model
Kdot Multitype K Function (i-to-any)
circumradius Circumradius and Diameter of a Linear Network
disc Circular Window
kppm Fit Cluster or Cox Point Process Model
plot.ppm plot a Fitted Point Process Model
Hardcore The Hard Core Point Process Model
as.owin Convert Data To Class owin
project.ppm Force Point Process Model to be Valid
diameter Diameter of an Object
K3est K-function of a Three-Dimensional Point Pattern
interp.im Interpolate a Pixel Image
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
delaunay Delaunay Triangulation of Point Pattern
predict.ppm Prediction from a Fitted Point Process Model
compareFit Residual Diagnostics for Multiple Fitted Models
rat Ratio object
methods.kppm Methods for Cluster Point Process Models
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
owin.object Class owin
cut.im Convert Pixel Image from Numeric to Factor
rmpoint Generate N Random Multitype Points
gpc2owin Convert Polygonal Region into Different Format
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
Lcross Multitype L-function (cross-type)
fryplot Fry Plot of Point Pattern
Linhom L-function
imcov Spatial Covariance of a Pixel Image
dummify Convert Data to Numeric Values by Constructing Dummy Variables
distfun Distance Map as a Function
centroid.owin Centroid of a window
finpines Pine saplings in Finland.
pairdist.default Pairwise distances
identify.psp Identify Segments in a Line Segment Pattern
dilation Morphological Dilation
Kscaled Locally Scaled K-function
perimeter Perimeter Length of Window
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
as.box3 Convert Data to Three-Dimensional Box
rjitter Random Perturbation of a Point Pattern
cbind.hyperframe Combine Hyperframes by Rows or by Columns
expand.owin Expand Window By Factor
eval.fv Evaluate Expression Involving Functions
anova.ppm ANOVA for Fitted Point Process Models
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
MultiStrauss The Multitype Strauss Point Process Model
diameter.owin Diameter of a Window
as.tess Convert Data To Tessellation
eem Exponential Energy Marks
runifpoint3 Generate N Uniform Random Points in Three Dimensions
Poisson Poisson Point Process Model
data.ppm Extract Original Data from a Fitted Point Process Model
methods.slrm Methods for Spatial Logistic Regression Models
letterR Window in Shape of Letter R
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
is.im Test Whether An Object Is A Pixel Image
compatible.fasp Test Whether Function Arrays Are Compatible
valid.ppm Check Whether Point Process Model is Valid
as.mask Pixel Image Approximation of a Window
Kmulti Marked K-Function
plot.bermantest Plot Result of Berman Test
Jest Estimate the J-function
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
bdist.points Distance to Boundary of Window
idw Inverse-distance weighted smoothing of observations at irregular points
clip.infline Intersect Infinite Straight Lines with a Window
Saturated Saturated Pairwise Interaction model
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
nearest.raster.point Find Pixel Nearest to a Given Point
Kcross Multitype K Function (Cross-type)
compatible.im Test Whether Pixel Images Are Compatible
pppmatching Create a Point Matching
discretise Safely Convert Point Pattern Window to Binary Mask
Kdot.inhom Inhomogeneous Multitype K Dot Function
methods.units Methods for Units
midpoints.psp Midpoints of Line Segment Pattern
istat Point and Click Interface for Exploratory Analysis of Point Pattern
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
pixellate.owin Convert Window to Pixel Image
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
angles.psp Orientation Angles of Line Segments
is.multitype.ppm Test Whether A Point Process Model is Multitype
Gres Residual G Function
plot.psp plot a Spatial Line Segment Pattern
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
rshift Random Shift
predict.lppm Predict Point Process Model on Linear Network
rLGCP Simulate Log-Gaussian Cox Process
bermantest Berman's Tests for Point Process Model
rMosaicSet Mosaic Random Set
linearK Linear K Function
Triplets The Triplet Point Process Model
affine.owin Apply Affine Transformation To Window
crossdist.psp Pairwise distances between two different line segment patterns
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
as.function.fv Convert Function Value Table to Function
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
pairdist.pp3 Pairwise distances in Three Dimensions
as.data.frame.im Convert Pixel Image to Data Frame
as.polygonal Convert a Window to a Polygonal Window
rescue.rectangle Convert Window Back To Rectangle
diameter.box3 Geometrical Calculations for Three-Dimensional Box
is.convex Test Whether a Window is Convex
fasp.object Function Arrays for Spatial Patterns
amacrine Hughes' Amacrine Cell Data
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
pcf.fv Pair Correlation Function obtained from K Function
pixellate.ppp Convert Point Pattern to Pixel Image
box3 Three-Dimensional Box
clarkevans Clark and Evans Aggregation Index
bdist.tiles Distance to Boundary of Window
Ord Generic Ord Interaction model
is.ppm Test Whether An Object Is A Fitted Point Process Model
japanesepines Japanese Pines Point Pattern
default.expand Compute Expansion Window for Simulation
lansing Lansing Woods Point Pattern
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
clickppp Interactively Add Points
rmh.ppm Simulate from a Fitted Point Process Model
methods.box3 Methods for Three-Dimensional Box
linnet Create a Linear Network
rotate Rotate
deltametric Delta Metric
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
closing Morphological Closing
collapse.fv Collapse Several Function Tables into One
rpoisppx Generate Poisson Point Pattern in Any Dimensions
update.kppm Update a Fitted Cluster Point Process Model
affine.ppp Apply Affine Transformation To Point Pattern
as.data.frame.ppp Coerce Point Pattern to a Data Frame
infline Infinite Straight Lines
crossdist Pairwise distances
dirichlet Dirichlet Tessellation of Point Pattern
connected Connected components of an image or window
colourmap Colour Lookup Tables
envelope.envelope Recompute Envelopes
split.im Divide Image Into Sub-images
plot.hyperframe Plot Entries in a Hyperframe
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
density.psp Kernel Smoothing of Line Segment Pattern
influence.ppm Influence Measure for Spatial Point Process Model
dilated.areas Areas of Morphological Dilations
Extract.splitppp Extract or Replace Sub-Patterns
rpoisline Generate Poisson Random Line Process
spatstat-deprecated Deprecated spatstat functions
marks Marks of a Point Pattern
blur Apply Gaussian Blur to a Pixel Image
intersect.owin Intersection, Union or Set Subtraction of Two Windows
rotate.psp Rotate a Line Segment Pattern
bdist.pixels Distance to Boundary of Window
clarkevans.test Clark and Evans Test
update.ppm Update a Fitted Point Process Model
is.multitype Test whether Object is Multitype
Extract.fasp Extract Subset of Function Array
is.ppp Test Whether An Object Is A Point Pattern
Gfox Foxall's Distance Functions
volume Volume of an Object
Hest Spherical Contact Distribution Function
distmap.ppp Distance Map of Point Pattern
Fest Estimate the empty space function F
compatible Test Whether Objects Are Compatible
Extract.msr Extract Subset of Signed or Vector Measure
rshift.splitppp Randomly Shift a List of Point Patterns
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
owin Create a Window
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
convexhull.xy Convex Hull of Points
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
contour.im Contour plot of pixel image
levelset Level Set of a Pixel Image
Emark Diagnostics for random marking
runifpoint Generate N Uniform Random Points
sharpen Data Sharpening of Point Pattern
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
demopat Artificial Data Point Pattern
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
simulate.ppm Simulate a Fitted Gibbs Point Process Model
Extract.im Extract Subset of Image
summary.quad Summarizing a Quadrature Scheme
chicago Chicago Street Crime Data
runifdisc Generate N Uniform Random Points in a Disc
heather Diggle's Heather Data
markvario Mark Variogram
dfbetas.ppm Parameter influence measure
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
summary.splitppp Summary of a Split Point Pattern
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
rpoislinetess Poisson Line Tessellation
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
lut Lookup Tables
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
rMatClust Simulate Matern Cluster Process
plot.linnet Plot a linear network
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
Extract.psp Extract Subset of Line Segment Pattern
is.marked Test Whether Marks Are Present
Extract.ppp Extract or Replace Subset of Point Pattern
plot.leverage.ppm Plot Leverage Function
Geyer Geyer's Saturation Point Process Model
bei Tropical rain forest trees
pool.fasp Pool Data from Several Function Arrays
ppp.object Class of Point Patterns
Ldot Multitype L-function (i-to-any)
is.multitype.ppp Test Whether A Point Pattern is Multitype
as.matrix.owin Convert Pixel Image to Matrix
pcfdot Multitype pair correlation function (i-to-any)
Softcore The Soft Core Point Process Model
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
psp.object Class of Line Segment Patterns
rSSI Simulate Simple Sequential Inhibition
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
AreaInter The Area Interaction Point Process Model
F3est Empty Space Function of a Three-Dimensional Point Pattern
with.fv Evaluate an Expression in a Function Table
colourtools Convert and Compare Colours in Different Formats
crossdist.default Pairwise distances between two different sets of points
is.marked.ppm Test Whether A Point Process Model is Marked
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
Kest K-function
boxx Multi-Dimensional Box
convexhull Convex Hull
contour.listof Plot a List of Things
formula.ppm Model Formulae for Gibbs Point Process Models
cut.ppp Classify Points in a Point Pattern
integral.im Integral of a Pixel Image
envelope.lpp Envelope for Point Patterns on Linear Network
gorillas Gorilla Nesting Sites
gridcentres Rectangular grid of points
ewcdf Weighted Empirical Cumulative Distribution Function
affine.psp Apply Affine Transformation To Line Segment Pattern
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
LennardJones The Lennard-Jones Potential
incircle Find Largest Circle Inside Window
ants Harkness-Isham ants' nests data
StraussHard The Strauss / Hard Core Point Process Model
rescale.psp Convert Line Segment Pattern to Another Unit of Length
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
bounding.box.xy Convex Hull of Points
redwoodfull California Redwoods Point Pattern (Entire Dataset)
Kmodel K function of a model
clickpoly Interactively Define a Polygon
varblock Estimate Variance of Summary Statistic by Subdivision
bind.fv Combine Function Value Tables
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
eval.fasp Evaluate Expression Involving Function Arrays
npoints Number of Points in a Point Pattern
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
eroded.areas Areas of Morphological Erosions
is.marked.ppp Test Whether A Point Pattern is Marked
plot.quad plot a Spatial Quadrature Scheme
rMosaicField Mosaic Random Field
bramblecanes Hutchings' Bramble Canes data
humberside Humberside Data on Childhood Leukaemia and Lymphoma
bounding.box Bounding Box of a Window or Point Pattern
border Border Region of a Window
bronzefilter Bronze gradient filter data
complement.owin Take Complement of a Window
kaplan.meier Kaplan-Meier Estimator using Histogram Data
rlinegrid Generate grid of parallel lines with random displacement
ippm Optimise Irregular Trend Parameters in Point Process Model
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
hist.im Histogram of Pixel Values in an Image
runifpointx Generate N Uniform Random Points in Any Dimensions
leverage.ppm Leverage Measure for Spatial Point Process Model
thomas.estK Fit the Thomas Point Process by Minimum Contrast
unitname Name for Unit of Length
latest.news Print News About Latest Version of Package
Strauss The Strauss Point Process Model
methods.distfun Methods for Distance Functions
Gmulti Marked Nearest Neighbour Distance Function
nnclean Nearest Neighbour Clutter Removal
Extract.quad Subset of Quadrature Scheme
plot.layered Layered Plot
BadGey Hybrid Geyer Point Process Model
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
as.hyperframe Convert Data to Hyperframe
Iest Estimate the I-function
corners Corners of a rectangle
Kres Residual K Function
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
harmonise.im Make Pixel Images Compatible
intersect.tess Intersection of Two Tessellations
is.stationary Recognise Stationary and Poisson Point Process Models
inside.owin Test Whether Points Are Inside A Window
im.object Class of Images
layered Create List of Plotting Layers
OrdThresh Ord's Interaction model
longleaf Longleaf Pines Point Pattern
plot.listof Plot a List of Things
nndist Nearest neighbour distances
ord.family Ord Interaction Process Family
ppx Multidimensional Space-Time Point Pattern
rho2hat Smoothed Relative Density of Pairs of Covariate Values
ripras Estimate window from points alone
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
rshift.psp Randomly Shift a Line Segment Pattern
spatstat-package The Spatstat Package
pcf Pair Correlation Function
tiles Extract List of Tiles in a Tessellation
sumouter Compute Quadratic Forms
stieltjes Compute Integral of Function Against Cumulative Distribution
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
Extract.fv Extract Subset of Function Values
DiggleGratton Diggle-Gratton model
allstats Calculate four standard summary functions of a point pattern.
MultiHard The Multitype Hard Core Point Process Model
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
flipxy Exchange X and Y Coordinates
copper Berman-Huntington points and lines data
gridweights Compute Quadrature Weights Based on Grid Counts
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
betacells Beta Ganglion Cells in Cat Retina
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
is.empty Test Whether An Object Is Empty
flu Influenza Virus Proteins
pcf.fasp Pair Correlation Function obtained from array of K functions
pcfinhom Inhomogeneous Pair Correlation Function
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
lineardisc Compute Disc of Given Radius in Linear Network
nndist.pp3 Nearest neighbour distances in three dimensions
model.depends Identify Covariates Involved in each Model Term
plot.im Plot a Pixel Image
ponderosa Ponderosa Pine Tree Point Pattern
rcell Simulate Baddeley-Silverman Cell Process
rpoispp Generate Poisson Point Pattern
scaletointerval Rescale Data to Lie Between Specified Limits
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
summary.psp Summary of a Line Segment Pattern Dataset
as.im Convert to Pixel Image
distmap Distance Map
discpartarea Area of Part of Disc
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
lengths.psp Lengths of Line Segments
inforder.family Infinite Order Interaction Family
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
as.rectangle Window Frame
distmap.psp Distance Map of Line Segment Pattern
Fiksel The Fiksel Interaction
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
compatible.fv Test Whether Function Objects Are Compatible
Gcom Model Compensator of Nearest Neighbour Function
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
Extract.tess Extract or Replace Subset of Tessellation
triplet.family Triplet Interaction Family
Kmeasure Reduced Second Moment Measure
Ldot.inhom Inhomogeneous Multitype L Dot Function
nsegments Number of Line Segments in a Line Segment Pattern
edges2triangles List Triangles in a Graph
as.ppp Convert Data To Class ppp
Extract.listof Extract or Replace Subset of a List of Things
Jdot Multitype J Function (i-to-any)
distmap.owin Distance Map of Window
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
model.images Compute Images of Constructed Covariates
affine Apply Affine Transformation
nearestsegment Find Line Segment Nearest to Each Point
shift.owin Apply Vector Translation To Window
smooth.msr Smooth a Signed or Vector-Valued Measure
union.quad Union of Data and Dummy Points
spatstat.options Internal Options in Spatstat Package
markconnect Mark Connection Function
Pairwise Generic Pairwise Interaction model
pppmatching.object Class of Point Matchings
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
append.psp Combine Two Line Segment Patterns
as.matrix.im Convert Pixel Image to Matrix or Array
by.im Apply Function to Image Broken Down by Factor
endpoints.psp Endpoints of Line Segment Pattern
fitin.ppm Extract the Interaction from a Fitted Point Process Model
fitted.ppm Fitted Conditional Intensity for Point Process Model
harmonic Basis for Harmonic Functions
iplot Point and Click Interface for Displaying a Point Pattern
is.subset.owin Determine Whether One Window is Contained In Another
nncross Nearest Neighbours Between Two Patterns
pairdist.ppp Pairwise distances
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
plot.plotppm Plot a plotppm Object Created by plot.ppm
pool.envelope Pool Data from Several Envelopes
pppdist Distance Between Two Point Patterns
quadratresample Resample a Point Pattern by Resampling Quadrats
rlabel Random Re-Labelling of Point Pattern
scanpp Read Point Pattern From Data File
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
trim.rectangle Cut margins from rectangle
summary.owin Summary of a Spatial Window
nnwhich.ppx Nearest Neighbours in Any Dimensions
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Details

Date 2012-03-14
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
LazyLoad true
ByteCompile true
Packaged 2012-03-14 05:31:42 UTC; adrian
Repository CRAN
Date/Publication 2012-03-14 07:09:51
depends base (>= 2.14.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.14.0) , stats , utils
suggests gpclib , locfit , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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