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spatstat (version 1.26-1)

Spatial Point Pattern analysis, model-fitting, simulation, tests

Description

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

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Version

Install

install.packages('spatstat')

Monthly Downloads

16,015

Version

1.26-1

License

GPL (>= 2)

Maintainer

Adrian Baddeley

Last Published

April 19th, 2012

Functions in spatstat (1.26-1)

Geyer

Geyer's Saturation Point Process Model
Jcross

Multitype J Function (i-to-j)
ants

Harkness-Isham ants' nests data
spatstat-deprecated

Deprecated spatstat functions
as.function.fv

Convert Function Value Table to Function
StraussHard

The Strauss / Hard Core Point Process Model
Gmulti

Marked Nearest Neighbour Distance Function
is.owin

Test Whether An Object Is A Window
Ldot

Multitype L-function (i-to-any)
discpartarea

Area of Part of Disc
Kmeasure

Reduced Second Moment Measure
contour.im

Contour plot of pixel image
hist.im

Histogram of Pixel Values in an Image
gorillas

Gorilla Nesting Sites
Lcross

Multitype L-function (cross-type)
Iest

Estimate the I-function
bw.scott

Scott's Rule for Bandwidth Selection for Kernel Density
crossdist.ppp

Pairwise distances between two different point patterns
fryplot

Fry Plot of Point Pattern
nearest.raster.point

Find Pixel Nearest to a Given Point
expand.owin

Expand Window By Factor
allstats

Calculate four standard summary functions of a point pattern.
OrdThresh

Ord's Interaction model
linnet

Create a Linear Network
Extract.splitppp

Extract or Replace Sub-Patterns
amacrine

Hughes' Amacrine Cell Data
intersect.tess

Intersection of Two Tessellations
model.images

Compute Images of Constructed Covariates
Extract.fasp

Extract Subset of Function Array
pppmatching

Create a Point Matching
bw.stoyan

Stoyan's Rule of Thumb for Bandwidth Selection
plot.listof

Plot a List of Things
anemones

Beadlet Anemones Data
F3est

Empty Space Function of a Three-Dimensional Point Pattern
Kcom

Model Compensator of K Function
as.tess

Convert Data To Tessellation
area.owin

Area of a Window
Extract.msr

Extract Subset of Signed or Vector Measure
data.ppm

Extract Original Data from a Fitted Point Process Model
clickppp

Interactively Add Points
matclust.estK

Fit the Matern Cluster Point Process by Minimum Contrast
anova.lppm

ANOVA for Fitted Point Process Models on Linear Network
affine.ppp

Apply Affine Transformation To Point Pattern
plot.msr

Plot a Signed or Vector-Valued Measure
nnclean

Nearest Neighbour Clutter Removal
chicago

Chicago Street Crime Data
Gres

Residual G Function
imcov

Spatial Covariance of a Pixel Image
heather

Diggle's Heather Data
matchingdist

Distance for a Point Pattern Matching
incircle

Find Largest Circle Inside Window
ripras

Estimate window from points alone
lppm

Fit Point Process Model to Point Pattern on Linear Network
Tstat

Third order summary statistic
Pairwise

Generic Pairwise Interaction model
humberside

Humberside Data on Childhood Leukaemia and Lymphoma
pairdist.psp

Pairwise distances between line segments
effectfun

Compute Fitted Effect of a Spatial Covariate in a Point Process Model
demopat

Artificial Data Point Pattern
flu

Influenza Virus Proteins
MultiHard

The Multitype Hard Core Point Process Model
im.object

Class of Images
affine.psp

Apply Affine Transformation To Line Segment Pattern
cut.im

Convert Pixel Image from Numeric to Factor
quadscheme

Generate a Quadrature Scheme from a Point Pattern
plot.kstest

Plot a Spatial Kolmogorov-Smirnov Test
density.ppp

Kernel Smoothed Intensity of Point Pattern
as.data.frame.hyperframe

Coerce Hyperframe to Data Frame
pcf.fasp

Pair Correlation Function obtained from array of K functions
bind.fv

Combine Function Value Tables
inside.owin

Test Whether Points Are Inside A Window
msr

Signed or Vector-Valued Measure
by.im

Apply Function to Image Broken Down by Factor
is.convex

Test Whether a Window is Convex
methods.linnet

Methods for Linear Networks
mincontrast

Method of Minimum Contrast
is.marked

Test Whether Marks Are Present
nnwhich.ppx

Nearest Neighbours in Any Dimensions
blur

Apply Gaussian Blur to a Pixel Image
as.box3

Convert Data to Three-Dimensional Box
as.psp

Convert Data To Class psp
ppp.object

Class of Point Patterns
crossdist.pp3

Pairwise distances between two different three-dimensional point patterns
linearpcf

Linear Pair Correlation Function
pcfinhom

Inhomogeneous Pair Correlation Function
eval.fasp

Evaluate Expression Involving Function Arrays
print.owin

Print Brief Details of a Spatial Window
as.im

Convert to Pixel Image
pool.envelope

Pool Data from Several Envelopes
summary.ppp

Summary of a Point Pattern Dataset
bw.smoothppp

Cross Validated Bandwidth Selection for Spatial Smoothing
cbind.hyperframe

Combine Hyperframes by Rows or by Columns
kppm

Fit Cluster or Cox Point Process Model
latest.news

Print News About Latest Version of Package
LennardJones

The Lennard-Jones Potential
model.depends

Identify Covariates Involved in each Model Term
alltypes

Calculate Summary Statistic for All Types in a Multitype Point Pattern
connected

Connected components of an image or window
methods.rho2hat

Methods for Intensity Functions of Two Spatial Covariates
summary.ppm

Summarizing a Fitted Point Process Model
pcf.fv

Pair Correlation Function obtained from K Function
nncross

Nearest Neighbours Between Two Patterns
rMosaicSet

Mosaic Random Set
plot.plotppm

Plot a plotppm Object Created by plot.ppm
finpines

Pine saplings in Finland.
plot.ppp

plot a Spatial Point Pattern
methods.rhohat

Methods for Intensity Functions of Spatial Covariate
lpp

Create Point Pattern on Linear Network
identify.psp

Identify Segments in a Line Segment Pattern
pointsOnLines

Place Points Evenly Along Specified Lines
japanesepines

Japanese Pines Point Pattern
lengths.psp

Lengths of Line Segments
rgbim

Create Colour-Valued Pixel Image
pairdist.ppx

Pairwise Distances in Any Dimensions
pppmatching.object

Class of Point Matchings
nndist.pp3

Nearest neighbour distances in three dimensions
cut.ppp

Classify Points in a Point Pattern
vcov.kppm

Variance-Covariance Matrix for a Fitted Cluster Point Process Model
lgcp.estpcf

Fit a Log-Gaussian Cox Point Process by Minimum Contrast
quadrats

Divide Region into Quadrats
pairdist.default

Pairwise distances
rpoislinetess

Poisson Line Tessellation
lineardisc

Compute Disc of Given Radius in Linear Network
rpoisppOnLines

Generate Poisson Point Pattern on Line Segments
shift.ppp

Apply Vector Translation To Point Pattern
markstat

Summarise Marks in Every Neighbourhood in a Point Pattern
murchison

Murchison gold deposits
closing

Morphological Closing
disc

Circular Window
lut

Lookup Tables
nsegments

Number of Line Segments in a Line Segment Pattern
chorley

Chorley-Ribble Cancer Data
erosion

Morphological Erosion
nncorr

Nearest-Neighbour Correlation Indices of Marked Point Pattern
box3

Three-Dimensional Box
kstest.ppm

Kolmogorov-Smirnov Test for Point Process Model
rotate.psp

Rotate a Line Segment Pattern
pcfdot.inhom

Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
complement.owin

Take Complement of a Window
as.hyperframe.ppx

Extract coordinates and marks of multidimensional point pattern
vcov.ppm

Variance-Covariance Matrix for a Fitted Point Process Model
is.marked.ppm

Test Whether A Point Process Model is Marked
border

Border Region of a Window
DiggleGatesStibbard

Diggle-Gates-Stibbard Point Process Model
rescue.rectangle

Convert Window Back To Rectangle
perimeter

Perimeter Length of Window
pcf3est

Pair Correlation Function of a Three-Dimensional Point Pattern
rmhmodel.list

Define Point Process Model for Metropolis-Hastings Simulation.
pcfcross.inhom

Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
plot.layered

Layered Plot
opening

Morphological Opening
slrm

Spatial Logistic Regression
adaptive.density

Intensity Estimate of Point Pattern Using Tessellation
spatstat-package

The Spatstat Package
Extract.ppp

Extract or Replace Subset of Point Pattern
Extract.listof

Extract or Replace Subset of a List of Things
ewcdf

Weighted Empirical Cumulative Distribution Function
rPoissonCluster

Simulate Poisson Cluster Process
mean.im

Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
pairwise.family

Pairwise Interaction Process Family
rshift

Random Shift
rho2hat

Smoothed Relative Density of Pairs of Covariate Values
affine

Apply Affine Transformation
lurking

Lurking variable plot
rmpoint

Generate N Random Multitype Points
convexhull

Convex Hull
spruces

Spruces Point Pattern
square

Square Window
nnwhich.pp3

Nearest neighbours in three dimensions
pixellate.ppp

Convert Point Pattern to Pixel Image
residuals.ppm

Residuals for Fitted Point Process Model
rSSI

Simulate Simple Sequential Inhibition
summary.listof

Summary of a List of Things
rescale

Convert dataset to another unit of length
angles.psp

Orientation Angles of Line Segments
qqplot.ppm

Q-Q Plot of Residuals from Fitted Point Process Model
rshift.psp

Randomly Shift a Line Segment Pattern
ponderosa

Ponderosa Pine Tree Point Pattern
as.rectangle

Window Frame
runifpointx

Generate N Uniform Random Points in Any Dimensions
rDGS

Perfect Simulation of the Diggle-Gates-Stibbard Process
Linhom

L-function
rmpoispp

Generate Multitype Poisson Point Pattern
volume

Volume of an Object
boxx

Multi-Dimensional Box
idw

Inverse-distance weighted smoothing of observations at irregular points
predict.kppm

Prediction from a Fitted Cluster Point Process Model
smooth.ppp

Spatial smoothing of observations at irregular points
Fiksel

The Fiksel Interaction
rpoisppx

Generate Poisson Point Pattern in Any Dimensions
pixelquad

Quadrature Scheme Based on Pixel Grid
rthin

Random Thinning
Kscaled

Locally Scaled K-function
quadratcount

Quadrat counting for a point pattern
runifpoint

Generate N Uniform Random Points
tiles

Extract List of Tiles in a Tessellation
solutionset

Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
ippm

Optimise Irregular Trend Parameters in Point Process Model
Triplets

The Triplet Point Process Model
leverage.ppm

Leverage Measure for Spatial Point Process Model
chop.tess

Subdivide a Window or Tessellation using a Set of Lines
dirichlet

Dirichlet Tessellation of Point Pattern
as.mask.psp

Convert Line Segment Pattern to Binary Pixel Mask
markcorrint

Mark Correlation Integral
Kcross

Multitype K Function (Cross-type)
Kcross.inhom

Inhomogeneous Cross K Function
pairdist.ppp

Pairwise distances
AreaInter

The Area Interaction Point Process Model
PairPiece

The Piecewise Constant Pairwise Interaction Point Process Model
rStraussHard

Perfect Simulation of the Strauss-Hardcore Process
envelope.lpp

Envelope for Point Patterns on Linear Network
Lcross.inhom

Inhomogeneous Cross Type L Function
Strauss

The Strauss Point Process Model
betacells

Beta Ganglion Cells in Cat Retina
nndist.ppx

Nearest Neighbour Distances in Any Dimensions
areaGain

Difference of Disc Areas
crossing.psp

Crossing Points of Two Line Segment Patterns
copper

Berman-Huntington points and lines data
bounding.box.xy

Convex Hull of Points
gridcentres

Rectangular grid of points
BadGey

Hybrid Geyer Point Process Model
npfun

Dummy Function Returns Number of Points
bounding.box

Bounding Box of a Window or Point Pattern
Gfox

Foxall's Distance Functions
plot.splitppp

Plot a List of Point Patterns
compatible.fasp

Test Whether Function Arrays Are Compatible
colourmap

Colour Lookup Tables
distmap.owin

Distance Map of Window
harmonic

Basis for Harmonic Functions
density.splitppp

Kernel Smoothed Intensity of Split Point Pattern
pairs.im

Scatterplot Matrix for Pixel Images
Hardcore

The Hard Core Point Process Model
harmonise.im

Make Pixel Images Compatible
hamster

Aherne's hamster tumour data
logLik.ppm

Log Likelihood and AIC for Point Process Model
model.matrix.ppm

Extract Design Matrix from Point Process Model
plot.psp

plot a Spatial Line Segment Pattern
plot.hyperframe

Plot Entries in a Hyperframe
edges2triangles

List Triangles in a Graph
pairdist.pp3

Pairwise distances in Three Dimensions
bdist.points

Distance to Boundary of Window
model.frame.ppm

Extract the Environment of a Point Process Model
distmap.psp

Distance Map of Line Segment Pattern
pcfcross

Multitype pair correlation function (cross-type)
envelope.pp3

Simulation Envelopes of Summary Function for 3D Point Pattern
rpoispp

Generate Poisson Point Pattern
plot.influence.ppm

Plot Influence Measure
predict.slrm

Predicted or Fitted Values from Spatial Logistic Regression
applynbd

Apply Function to Every Neighbourhood in a Point Pattern
compatible

Test Whether Objects Are Compatible
rescale.psp

Convert Line Segment Pattern to Another Unit of Length
rMatClust

Simulate Matern Cluster Process
fitted.slrm

Fitted Probabilities for Spatial Logistic Regression
pcf.ppp

Pair Correlation Function of Point Pattern
ppm

Fit Point Process Model to Data
sharpen

Data Sharpening of Point Pattern
plot.colourmap

Plot a Colour Map
tess

Create a Tessellation
valid.ppm

Check Whether Point Process Model is Valid
plot.envelope

Plot a Simulation Envelope
pool.rat

Pool Data from Several Ratio Objects
ppx

Multidimensional Space-Time Point Pattern
quantile.im

Sample Quantiles of Pixel Image
triplet.family

Triplet Interaction Family
simulate.kppm

Simulate a Fitted Cluster Point Process Model
print.quad

Print a Quadrature Scheme
methods.kppm

Methods for Cluster Point Process Models
plot.kppm

Plot a fitted cluster point process
quadrat.test

Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
rmhcontrol

Set Control Parameters for Metropolis-Hastings Algorithm.
rNeymanScott

Simulate Neyman-Scott Process
swedishpines

Swedish Pines Point Pattern
runifpointOnLines

Generate N Uniform Random Points On Line Segments
scan.test

Spatial Scan Test
pairsat.family

Saturated Pairwise Interaction Point Process Family
rescale.owin

Convert Window to Another Unit of Length
rmh.default

Simulate Point Process Models using the Metropolis-Hastings Algorithm.
rMaternII

Simulate Matern Model II
rlabel

Random Re-Labelling of Point Pattern
rMaternI

Simulate Matern Model I
shift.owin

Apply Vector Translation To Window
ppp

Create a Point Pattern
Jest

Estimate the J-function
rhohat

Smoothing Estimate of Covariate Transformation
pcfdot

Multitype pair correlation function (i-to-any)
update.ppm

Update a Fitted Point Process Model
cells

Biological Cells Point Pattern
plot.bermantest

Plot Result of Berman Test
suffstat

Sufficient Statistic of Point Process Model
psp.object

Class of Line Segment Patterns
plot.linim

Plot Pixel Image on Linear Network
colourtools

Convert and Compare Colours in Different Formats
rmhmodel.ppm

Interpret Fitted Model for Metropolis-Hastings Simulation.
Kest.fft

K-function using FFT
psstA

Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
Extract.fv

Extract Subset of Function Values
by.ppp

Apply a Function to a Point Pattern Broken Down by Factor
rDiggleGratton

Perfect Simulation of the Diggle-Gratton Process
Ldot.inhom

Inhomogeneous Multitype L Dot Function
is.empty

Test Whether An Object Is Empty
compatible.fv

Test Whether Function Objects Are Compatible
affine.owin

Apply Affine Transformation To Window
duplicated.ppp

Determine Duplicated Points in a Spatial Point Pattern
Lest

L-function
crossdist

Pairwise distances
plot.slrm

Plot a Fitted Spatial Logistic Regression
with.hyperframe

Evaluate an Expression in Each Row of a Hyperframe
cauchy.estpcf

Fit the Neyman-Scott cluster process with Cauchy kernel
default.dummy

Generate a Default Pattern of Dummy Points
update.kppm

Update a Fitted Cluster Point Process Model
persp.im

Perspective Plot of Pixel Image
fitted.ppm

Fitted Conditional Intensity for Point Process Model
osteo

Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
nndist.psp

Nearest neighbour distances between line segments
vargamma.estK

Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
crossdist.ppx

Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
clickpoly

Interactively Define a Polygon
Fest

Estimate the empty space function F
pp3

Three Dimensional Point Pattern
rLGCP

Simulate Log-Gaussian Cox Process
endpoints.psp

Endpoints of Line Segment Pattern
concatxy

Concatenate x,y Coordinate Vectors
envelope

Simulation Envelopes of Summary Function
coef.slrm

Coefficients of Fitted Spatial Logistic Regression Model
rcell

Simulate Baddeley-Silverman Cell Process
is.multitype.ppp

Test Whether A Point Pattern is Multitype
dummify

Convert Data to Numeric Values by Constructing Dummy Variables
rmh

Simulate point patterns using the Metropolis-Hastings algorithm.
eroded.areas

Areas of Morphological Erosions
is.ppm

Test Whether An Object Is A Fitted Point Process Model
linearpcfinhom

Inhomogeneous Linear Pair Correlation Function
formula.ppm

Model Formulae for Gibbs Point Process Models
linearKinhom

Inhomogeneous Linear K Function
crossdist.default

Pairwise distances between two different sets of points
quadrat.test.splitppp

Chi-Squared Test of CSR for Split Point Pattern
linearK

Linear K Function
union.quad

Union of Data and Dummy Points
Kdot

Multitype K Function (i-to-any)
profilepl

Profile Maximum Pseudolikelihood
urkiola

Urkiola Woods Point Pattern
anova.ppm

ANOVA for Fitted Point Process Models
summary.psp

Summary of a Line Segment Pattern Dataset
diameter.box3

Geometrical Calculations for Three-Dimensional Box
is.stationary

Recognise Stationary and Poisson Point Process Models
diagnose.ppm

Diagnostic Plots for Fitted Point Process Model
rlinegrid

Generate grid of parallel lines with random displacement
whist

Weighted Histogram
is.multitype

Test whether Object is Multitype
Kinhom

Inhomogeneous K-function
shift.im

Apply Vector Translation To Pixel Image
SatPiece

Piecewise Constant Saturated Pairwise Interaction Point Process Model
thomas.estK

Fit the Thomas Point Process by Minimum Contrast
eval.fv

Evaluate Expression Involving Functions
convexhull.xy

Convex Hull of Points
runifpoint3

Generate N Uniform Random Points in Three Dimensions
plot.tess

Plot a tessellation
Extract.tess

Extract or Replace Subset of Tessellation
rpoisline

Generate Poisson Random Line Process
as.hyperframe

Convert Data to Hyperframe
Hest

Spherical Contact Distribution Function
reduced.sample

Reduced Sample Estimator using Histogram Data
discretise

Safely Convert Point Pattern Window to Binary Mask
nnwhich

Nearest neighbour
rmh.ppm

Simulate from a Fitted Point Process Model
rknn

Theoretical Distribution of Nearest Neighbour Distance
methods.box3

Methods for Three-Dimensional Box
Extract.im

Extract Subset of Image
Ord

Generic Ord Interaction model
coef.ppm

Coefficients of Fitted Point Process Model
plot.quad

plot a Spatial Quadrature Scheme
pixellate.owin

Convert Window to Pixel Image
multiplicity.ppp

Count Multiplicity of Duplicate Points
bdist.tiles

Distance to Boundary of Window
plot.ppm

plot a Fitted Point Process Model
ppm.object

Class of Fitted Point Process Models
localK

Neighbourhood density function
psst

Pseudoscore Diagnostic For Fitted Model against General Alternative
project2segment

Move Point To Nearest Line
plot.leverage.ppm

Plot Leverage Function
lohboot

Bootstrap Confidence Bands for Summary Function
pairdist.lpp

Pairwise shortest-path distances between points on a linear network
rGaussPoisson

Simulate Gauss-Poisson Process
marks.psp

Marks of a Line Segment Pattern
as.mask

Pixel Image Approximation of a Window
quad.ppm

Extract Quadrature Scheme Used to Fit a Point Process Model
hyperframe

Hyper Data Frame
smooth.fv

Apply Smoothing to Function Values
Gest

Nearest Neighbour Distance Function G
relrisk

Nonparametric Estimate of Spatially-Varying Relative Risk
Jdot

Multitype J Function (i-to-any)
Softcore

The Soft Core Point Process Model
rStrauss

Perfect Simulation of the Strauss Process
dfbetas.ppm

Parameter influence measure
rThomas

Simulate Thomas Process
vargamma.estpcf

Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
dilated.areas

Areas of Morphological Dilations
print.im

Print Brief Details of an Image
rotate.owin

Rotate a Window
scanpp

Read Point Pattern From Data File
setcov

Set Covariance of a Window
with.fv

Evaluate an Expression in a Function Table
miplot

Morishita Index Plot
spatstat.options

Internal Options in Spatstat Package
owin.object

Class owin
nndist

Nearest neighbour distances
simulate.ppm

Simulate a Fitted Gibbs Point Process Model
corners

Corners of a rectangle
simplify.owin

Approximate a Polygon by a Simpler Polygon
rotate

Rotate
rjitter

Random Perturbation of a Point Pattern
dilation

Morphological Dilation
plot.im

Plot a Pixel Image
print.psp

Print Brief Details of a Line Segment Pattern Dataset
ord.family

Ord Interaction Process Family
print.ppm

Print a Fitted Point Process Model
periodify

Make Periodic Copies of a Spatial Pattern
nztrees

New Zealand Trees Point Pattern
is.im

Test Whether An Object Is A Pixel Image
rsyst

Simulate systematic random point pattern
fv

Create a Function Value Table
vertices

Vertices of a Window
progressreport

Print Progress Reports
shift.psp

Apply Vector Translation To Line Segment Pattern
methods.slrm

Methods for Spatial Logistic Regression Models
localpcf

Local pair correlation function
envelope.envelope

Recompute Envelopes
pool

Pool Data
marks

Marks of a Point Pattern
bw.diggle

Cross Validated Bandwidth Selection for Kernel Density
rescale.ppp

Convert Point Pattern to Another Unit of Length
stieltjes

Compute Integral of Function Against Cumulative Distribution
Extract.quad

Subset of Quadrature Scheme
Jmulti

Marked J Function
Gdot

Multitype Nearest Neighbour Distance Function (i-to-any)
G3est

Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
Kres

Residual K Function
as.matrix.im

Convert Pixel Image to Matrix or Array
MultiStraussHard

The Multitype/Hard Core Strauss Point Process Model
cauchy.estK

Fit the Neyman-Scott cluster process with Cauchy kernel
areaLoss

Difference of Disc Areas
Kmulti

Marked K-Function
crossdist.psp

Pairwise distances between two different line segment patterns
unitname

Name for Unit of Length
zapsmall.im

Rounding of Pixel Values
clickjoin

Interactively join vertices on a plot
integral.im

Integral of a Pixel Image
as.matrix.owin

Convert Pixel Image to Matrix
Kest

K-function
MultiStrauss

The Multitype Strauss Point Process Model
coords

Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
logLik.slrm

Loglikelihood of Spatial Logistic Regression
Kdot.inhom

Inhomogeneous Multitype K Dot Function
smooth.msr

Smooth a Signed or Vector-Valued Measure
interp.im

Interpolate a Pixel Image
thomas.estpcf

Fit the Thomas Point Process by Minimum Contrast
fitin.ppm

Extract the Interaction from a Fitted Point Process Model
rstrat

Simulate Stratified Random Point Pattern
is.ppp

Test Whether An Object Is A Point Pattern
eval.im

Evaluate Expression Involving Pixel Images
fasp.object

Function Arrays for Spatial Patterns
intersect.owin

Intersection, Union or Set Subtraction of Two Windows
longleaf

Longleaf Pines Point Pattern
lgcp.estK

Fit a Log-Gaussian Cox Point Process by Minimum Contrast
default.rmhcontrol

Set Default Control Parameters for Metropolis-Hastings Algorithm.
layered

Create List of Plotting Layers
raster.x

Cartesian Coordinates for a Pixel Raster
rCauchy

Simulate Neyman-Scott Point Process with Cauchy cluster kernel
plot.fv

Plot Function Values
matclust.estpcf

Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
plot.owin

Plot a Spatial Window
rMosaicField

Mosaic Random Field
nearestsegment

Find Line Segment Nearest to Each Point
runiflpp

Uniform Random Points on a Linear Network
markcorr

Mark Correlation Function
Saturated

Saturated Pairwise Interaction model
runifdisc

Generate N Uniform Random Points in a Disc
summary.owin

Summary of a Spatial Window
rshift.ppp

Randomly Shift a Point Pattern
rpoislpp

Poisson Point Process on a Linear Network
which.max.im

Identify Pixelwise Maximum of Several Pixel Images
simulate.slrm

Simulate a Fitted Spatial Logistic Regression Model
pixellate.psp

Convert Line Segment Pattern to Pixel Image
spatstat-internal

Internal spatstat functions
eem

Exponential Energy Marks
split.im

Divide Image Into Sub-images
rpoispp3

Generate Poisson Point Pattern in Three Dimensions
shift

Apply Vector Translation
npoints

Number of Points in a Point Pattern
rmhstart

Determine Initial State for Metropolis-Hastings Simulation.
methods.pp3

Methods for three-dimensional point patterns
Extract.psp

Extract Subset of Line Segment Pattern
as.data.frame.psp

Coerce Line Segment Pattern to a Data Frame
clarkevans.test

Clark and Evans Test
bramblecanes

Hutchings' Bramble Canes data
bdist.pixels

Distance to Boundary of Window
collapse.fv

Collapse Several Function Tables into One
Emark

Diagnostics for random marking
gridweights

Compute Quadrature Weights Based on Grid Counts
iplot

Point and Click Interface for Displaying a Point Pattern
methods.ppx

Methods for Multidimensional Space-Time Point Patterns
as.owin

Convert Data To Class owin
inforder.family

Infinite Order Interaction Family
dummy.ppm

Extract Dummy Points Used to Fit a Point Process Model
methods.lpp

Methods for Point Patterns on a Linear Network
markconnect

Mark Connection Function
nbfires

Point Patterns of New Brunswick Forest Fires
plot.pp3

Plot a three-dimensional point pattern
methods.lppm

Methods for Fitted Point Process Models on a Linear Network
plot.linnet

Plot a linear network
predict.ppm

Prediction from a Fitted Point Process Model
trim.rectangle

Cut margins from rectangle
DiggleGratton

Diggle-Gratton model
as.ppp

Convert Data To Class ppp
compatible.im

Test Whether Pixel Images Are Compatible
contour.listof

Plot a List of Things
spokes

Spokes pattern of dummy points
sumouter

Compute Quadratic Forms
bronzefilter

Bronze gradient filter data
summary.im

Summarizing a Pixel Image
clip.infline

Intersect Infinite Straight Lines with a Window
Gcom

Model Compensator of Nearest Neighbour Function
distmap

Distance Map
rpoint

Generate N Random Points
rmhmodel.default

Build Point Process Model for Metropolis-Hastings Simulation.
Replace.im

Reset Values in Subset of Image
diameter

Diameter of an Object
fv.object

Function Value Table
summary.splitppp

Summary of a Split Point Pattern
midpoints.psp

Midpoints of Line Segment Pattern
gpc2owin

Convert Polygonal Region into Different Format
flipxy

Exchange X and Y Coordinates
distmap.ppp

Distance Map of Point Pattern
is.marked.ppp

Test Whether A Point Pattern is Marked
distfun

Distance Map as a Function
km.rs

Kaplan-Meier and Reduced Sample Estimator using Histograms
methods.distfun

Methods for Distance Functions
istat

Point and Click Interface for Exploratory Analysis of Point Pattern
kaplan.meier

Kaplan-Meier Estimator using Histogram Data
pppdist

Distance Between Two Point Patterns
density.psp

Kernel Smoothing of Line Segment Pattern
psstG

Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
rotate.ppp

Rotate a Point Pattern
shapley

Galaxies in the Shapley Supercluster
reach

Interaction Distance of a Point Process
selfcrossing.psp

Crossing Points in a Line Segment Pattern
unnormdensity

Weighted kernel smoother
tile.areas

Compute Areas of Tiles in a Tessellation
localKinhom

Inhomogeneous Neighbourhood Density Function
predict.lppm

Predict Point Process Model on Linear Network
rescale.im

Convert Pixel Image to Another Unit of Length
compareFit

Residual Diagnostics for Multiple Fitted Models
commonGrid

Determine A Common Spatial Domain And Pixel Resolution
bermantest

Berman's Tests for Point Process Model
as.interact

Extract Interaction Structure
diameter.owin

Diameter of a Window
is.subset.owin

Determine Whether One Window is Contained In Another
delaunay

Delaunay Triangulation of Point Pattern
diameter.boxx

Geometrical Calculations for Multi-Dimensional Box
methods.boxx

Methods for Multi-Dimensional Box
marktable

Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
as.data.frame.ppp

Coerce Point Pattern to a Data Frame
letterR

Window in Shape of Letter R
simdat

Simulated Point Pattern
rHardcore

Perfect Simulation of the Hardcore Process
scaletointerval

Rescale Data to Lie Between Specified Limits
project.ppm

Force Point Process Model to be Valid
as.polygonal

Convert a Window to a Polygonal Window
unique.ppp

Extract Unique Points from a Spatial Point Pattern
rmhmodel

Define Point Process Model for Metropolis-Hastings Simulation.
Poisson

Poisson Point Process Model
rat

Ratio object
infline

Infinite Straight Lines
simplenet

Simple Example of Linear Network
Kmodel

K function of a model
clarkevans

Clark and Evans Aggregation Index
deltametric

Delta Metric
bw.relrisk

Cross Validated Bandwidth Selection for Relative Risk Estimation
im

Create a Pixel Image Object
pcf

Pair Correlation Function
levelset

Level Set of a Pixel Image
markvario

Mark Variogram
identify.ppp

Identify Points in a Point Pattern
methods.units

Methods for Units
pool.fasp

Pool Data from Several Function Arrays
residualspaper

Data and Code From JRSS Discussion Paper on Residuals
psp

Create a Line Segment Pattern
redwoodfull

California Redwoods Point Pattern (Entire Dataset)
rVarGamma

Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
linim

Create Pixel Image on Linear Network
quadratresample

Resample a Point Pattern by Resampling Quadrats
superimpose

Superimpose Several Geometric Patterns
rshift.splitppp

Randomly Shift a List of Point Patterns
quad.object

Class of Quadrature Schemes
summary.quad

Summarizing a Quadrature Scheme
varblock

Estimate Variance of Summary Statistic by Subdivision
anova.slrm

Analysis of Deviance for Spatial Logistic Regression Models
as.data.frame.im

Convert Pixel Image to Data Frame
dirichlet.weights

Compute Quadrature Weights Based on Dirichlet Tessellation
Gcross

Multitype Nearest Neighbour Distance Function (i-to-j)
default.expand

Compute Expansion Window for Simulation
bei

Tropical rain forest trees
pairdist

Pairwise distances
ganglia

Beta Ganglion Cells in Cat Retina, Old Version
lansing

Lansing Woods Point Pattern
owin

Create a Window
influence.ppm

Influence Measure for Spatial Point Process Model
is.multitype.ppm

Test Whether A Point Process Model is Multitype
centroid.owin

Centroid of a window
circumradius

Circumradius and Diameter of a Linear Network
pixellate

Convert Spatial Object to Pixel Image
K3est

K-function of a Three-Dimensional Point Pattern
split.ppp

Divide Point Pattern into Sub-patterns
unmark

Remove Marks
append.psp

Combine Two Line Segment Patterns
print.ppp

Print Brief Details of a Point Pattern Dataset
plot.fasp

Plot a Function Array
redwood

California Redwoods Point Pattern (Ripley's Subset)