spatstat v1.28-2

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
Gfox Foxall's Distance Functions
box3 Three-Dimensional Box
chorley Chorley-Ribble Cancer Data
Geyer Geyer's Saturation Point Process Model
crossdist.default Pairwise distances between two different sets of points
as.polygonal Convert a Window to a Polygonal Window
bdist.pixels Distance to Boundary of Window
as.interact Extract Interaction Structure
colourmap Colour Lookup Tables
compatible.im Test Whether Pixel Images Are Compatible
DiggleGratton Diggle-Gratton model
crossing.psp Crossing Points of Two Line Segment Patterns
discpartarea Area of Part of Disc
Extract.msr Extract Subset of Signed or Vector Measure
distfun Distance Map as a Function
concatxy Concatenate x,y Coordinate Vectors
Lcross.inhom Inhomogeneous Cross Type L Function
Saturated Saturated Pairwise Interaction model
edges2triangles List Triangles in a Graph
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
dfbetas.ppm Parameter influence measure
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
humberside Humberside Data on Childhood Leukaemia and Lymphoma
gridcentres Rectangular grid of points
is.empty Test Whether An Object Is Empty
complement.owin Take Complement of a Window
markcorrint Mark Correlation Integral
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
kppm Fit Cluster or Cox Point Process Model
cut.ppp Classify Points in a Point Pattern
methods.lpp Methods for Point Patterns on a Linear Network
distmap Distance Map
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
hamster Aherne's hamster tumour data
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
methods.linnet Methods for Linear Networks
ord.family Ord Interaction Process Family
idw Inverse-distance weighted smoothing of observations at irregular points
miplot Morishita Index Plot
incircle Find Largest Circle Inside Window
marks Marks of a Point Pattern
AreaInter The Area Interaction Point Process Model
pairdist.psp Pairwise distances between line segments
Extract.ppx Extract Subset of Multidimensional Point Pattern
Extract.fv Extract Subset of Function Values
nbfires Point Patterns of New Brunswick Forest Fires
Gest Nearest Neighbour Distance Function G
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
Jmulti Marked J Function
amacrine Hughes' Amacrine Cell Data
addvar Added Variable Plot for Point Process Model
levelset Level Set of a Pixel Image
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
persp.im Perspective Plot of Pixel Image
plot.quad plot a Spatial Quadrature Scheme
K3est K-function of a Three-Dimensional Point Pattern
lineardisc Compute Disc of Given Radius in Linear Network
nearest.raster.point Find Pixel Nearest to a Given Point
as.data.frame.ppp Coerce Point Pattern to a Data Frame
linearKinhom Inhomogeneous Linear K Function
pairdist Pairwise distances
methods.pp3 Methods for three-dimensional point patterns
pool Pool Data
profilepl Profile Maximum Pseudolikelihood
Ldot.inhom Inhomogeneous Multitype L Dot Function
quadratresample Resample a Point Pattern by Resampling Quadrats
predict.ppm Prediction from a Fitted Point Process Model
nndist.psp Nearest neighbour distances between line segments
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
bei Tropical rain forest trees
pcf.fasp Pair Correlation Function obtained from array of K functions
shift.owin Apply Vector Translation To Window
append.psp Combine Two Line Segment Patterns
closing Morphological Closing
areaLoss Difference of Disc Areas
smooth.msr Smooth a Signed or Vector-Valued Measure
contour.listof Plot a List of Things
split.im Divide Image Into Sub-images
quad.object Class of Quadrature Schemes
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
plot.fv Plot Function Values
methods.units Methods for Units
pointsOnLines Place Points Evenly Along Specified Lines
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
redwoodfull California Redwoods Point Pattern (Entire Dataset)
rmh.ppm Simulate from a Fitted Point Process Model
Emark Diagnostics for random marking
pppmatching Create a Point Matching
Extract.lpp Extract Subset of Point Pattern on Linear Network
Extract.tess Extract or Replace Subset of Tessellation
runiflpp Uniform Random Points on a Linear Network
rotate Rotate
StraussHard The Strauss / Hard Core Point Process Model
update.kppm Update a Fitted Cluster Point Process Model
midpoints.psp Midpoints of Line Segment Pattern
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
border Border Region of a Window
boxx Multi-Dimensional Box
F3est Empty Space Function of a Three-Dimensional Point Pattern
pixellate Convert Spatial Object to Pixel Image
pixellate.ppp Convert Point Pattern to Pixel Image
shapley Galaxies in the Shapley Supercluster
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
Kmeasure Reduced Second Moment Measure
chicago Chicago Street Crime Data
plot.plotppm Plot a plotppm Object Created by plot.ppm
commonGrid Determine A Common Spatial Domain And Pixel Resolution
quadrat.test Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
MultiStrauss The Multitype Strauss Point Process Model
union.quad Union of Data and Dummy Points
Kmulti.inhom Inhomogeneous Marked K-Function
rpoispp Generate Poisson Point Pattern
default.dummy Generate a Default Pattern of Dummy Points
runifpointOnLines Generate N Uniform Random Points On Line Segments
spatstat-package The Spatstat Package
bdist.points Distance to Boundary of Window
blur Apply Gaussian Blur to a Pixel Image
Kmodel K function of a model
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
crossdist Pairwise distances
trim.rectangle Cut margins from rectangle
bramblecanes Hutchings' Bramble Canes data
markconnect Mark Connection Function
unique.ppp Extract Unique Points from a Spatial Point Pattern
linim Create Pixel Image on Linear Network
LennardJones The Lennard-Jones Potential
rotate.ppp Rotate a Point Pattern
bronzefilter Bronze gradient filter data
dirichlet Dirichlet Tessellation of Point Pattern
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
dilation Morphological Dilation
rpoisline Generate Poisson Random Line Process
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
dclf.test Diggle-Cressie-Loosmore-Ford and Maximum Absolute Deviation Tests
spatstat-internal Internal spatstat functions
unnormdensity Weighted kernel smoother
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
eval.fasp Evaluate Expression Involving Function Arrays
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
fv Create a Function Value Table
chop.tess Subdivide a Window or Tessellation using a Set of Lines
clarkevans.test Clark and Evans Test
colourtools Convert and Compare Colours in Different Formats
distmap.owin Distance Map of Window
dummify Convert Data to Numeric Values by Constructing Dummy Variables
connected Connected components of an image or window
npoints Number of Points in a Point Pattern
nnwhich Nearest neighbour
intensity.ppp Empirical Intensity of Point Pattern
envelope Simulation Envelopes of Summary Function
intensity Intensity of a Dataset or a Model
crossdist.psp Pairwise distances between two different line segment patterns
pairdist.pp3 Pairwise distances in Three Dimensions
pairdist.ppx Pairwise Distances in Any Dimensions
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
interp.im Interpolate a Pixel Image
distmap.ppp Distance Map of Point Pattern
im.object Class of Images
nnwhich.ppx Nearest Neighbours in Any Dimensions
is.multitype.ppm Test Whether A Point Process Model is Multitype
is.rectangle Determine Type of Window
leverage.ppm Leverage Measure for Spatial Point Process Model
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
dilated.areas Areas of Morphological Dilations
is.ppm Test Whether An Object Is A Fitted Point Process Model
letterR Window in Shape of Letter R
plot.owin Plot a Spatial Window
flipxy Exchange X and Y Coordinates
pcfinhom Inhomogeneous Pair Correlation Function
localpcf Local pair correlation function
plot.splitppp Plot a List of Point Patterns
latest.news Print News About Latest Version of Package
methods.kppm Methods for Cluster Point Process Models
ppm Fit Point Process Model to Data
fitin.ppm Extract the Interaction from a Fitted Point Process Model
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
Fest Estimate the empty space function F
rGaussPoisson Simulate Gauss-Poisson Process
Jest Estimate the J-function
Kscaled Locally Scaled K-function
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
pairs.im Scatterplot Matrix for Pixel Images
gorillas Gorilla Nesting Sites
nnclean Nearest Neighbour Clutter Removal
plot.linim Plot Pixel Image on Linear Network
slrm Spatial Logistic Regression
as.im Convert to Pixel Image
psp.object Class of Line Segment Patterns
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
flu Influenza Virus Proteins
Extract.quad Subset of Quadrature Scheme
intersect.owin Intersection, Union or Set Subtraction of Two Windows
japanesepines Japanese Pines Point Pattern
Iest Estimate the I-function
square Square Window
rThomas Simulate Thomas Process
Kest.fft K-function using FFT
parres Partial Residuals for Point Process Model
Ldot Multitype L-function (i-to-any)
rmhexpand Specify Simulation Window or Expansion Rule
pixellate.owin Convert Window to Pixel Image
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
Tstat Third order summary statistic
Lcross Multitype L-function (cross-type)
applynbd Apply Function to Every Neighbourhood in a Point Pattern
as.hyperframe Convert Data to Hyperframe
bdist.tiles Distance to Boundary of Window
plot.psp plot a Spatial Line Segment Pattern
project.ppm Force Point Process Model to be Valid
model.matrix.ppm Extract Design Matrix from Point Process Model
bermantest Berman's Tests for Point Process Model
rthin Random Thinning
compareFit Residual Diagnostics for Multiple Fitted Models
cells Biological Cells Point Pattern
as.mask Pixel Image Approximation of a Window
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
ppp.object Class of Point Patterns
rlabel Random Re-Labelling of Point Pattern
quadrats Divide Region into Quadrats
smooth.fv Apply Smoothing to Function Values
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
msr Signed or Vector-Valued Measure
ppm.object Class of Fitted Point Process Models
by.im Apply Function to Image Broken Down by Factor
eem Exponential Energy Marks
cbind.hyperframe Combine Hyperframes by Rows or by Columns
suffstat Sufficient Statistic of Point Process Model
bounding.box.xy Convex Hull of Points
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
perimeter Perimeter Length of Window
delaunay Delaunay Triangulation of Point Pattern
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
exactMPLEstrauss Exact Maximum Pseudolikelihood Estimate for Stationary Strauss Process
as.matrix.owin Convert Pixel Image to Matrix
clickpoly Interactively Define a Polygon
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
formula.ppm Model Formulae for Gibbs Point Process Models
progressreport Print Progress Reports
crossdist.ppp Pairwise distances between two different point patterns
imcov Spatial Covariance of a Pixel Image
data.ppm Extract Original Data from a Fitted Point Process Model
infline Infinite Straight Lines
collapse.fv Collapse Several Function Tables into One
rpoislinetess Poisson Line Tessellation
rpoisppx Generate Poisson Point Pattern in Any Dimensions
rmpoint Generate N Random Multitype Points
fasp.object Function Arrays for Spatial Patterns
rescale.im Convert Pixel Image to Another Unit of Length
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
swedishpines Swedish Pines Point Pattern
intersect.tess Intersection of Two Tessellations
hist.im Histogram of Pixel Values in an Image
is.marked.ppm Test Whether A Point Process Model is Marked
reflect Reflect In Origin
bounding.box Bounding Box of a Window or Point Pattern
localKinhom Inhomogeneous Neighbourhood Density Function
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
logLik.slrm Loglikelihood of Spatial Logistic Regression
diameter.box3 Geometrical Calculations for Three-Dimensional Box
erosion Morphological Erosion
is.multitype.ppp Test Whether A Point Pattern is Multitype
pairdist.ppp Pairwise distances
print.owin Print Brief Details of a Spatial Window
lengths.psp Lengths of Line Segments
eroded.areas Areas of Morphological Erosions
is.ppp Test Whether An Object Is A Point Pattern
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
linnet Create a Linear Network
print.ppm Print a Fitted Point Process Model
lppm Fit Point Process Model to Point Pattern on Linear Network
rMosaicField Mosaic Random Field
sharpen Data Sharpening of Point Pattern
shift.ppp Apply Vector Translation To Point Pattern
redwood California Redwoods Point Pattern (Ripley's Subset)
im Create a Pixel Image Object
is.subset.owin Determine Whether One Window is Contained In Another
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
lurking Lurking variable plot
rstrat Simulate Stratified Random Point Pattern
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
methods.lppm Methods for Fitted Point Process Models on a Linear Network
nndist Nearest neighbour distances
model.depends Identify Covariates Involved in each Model Term
pairwise.family Pairwise Interaction Process Family
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
plot.hyperframe Plot Entries in a Hyperframe
simdat Simulated Point Pattern
plot.slrm Plot a Fitted Spatial Logistic Regression
scalardilate Apply Scalar Dilation
shift.im Apply Vector Translation To Pixel Image
pcf.fv Pair Correlation Function obtained from K Function
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
psp Create a Line Segment Pattern
spatstat-deprecated Deprecated spatstat functions
plot.im Plot a Pixel Image
plot.msr Plot a Signed or Vector-Valued Measure
rho2hat Smoothed Relative Density of Pairs of Covariate Values
Jcross Multitype J Function (i-to-j)
rshift.splitppp Randomly Shift a List of Point Patterns
Extract.fasp Extract Subset of Function Array
print.quad Print a Quadrature Scheme
ponderosa Ponderosa Pine Tree Point Pattern
rpoislpp Poisson Point Process on a Linear Network
spokes Spokes pattern of dummy points
scaletointerval Rescale Data to Lie Between Specified Limits
Linhom L-function
Kdot.inhom Inhomogeneous Multitype K Dot Function
spatstat.options Internal Options in Spatstat Package
summary.im Summarizing a Pixel Image
rescale Convert dataset to another unit of length
Triplets The Triplet Point Process Model
rshift Random Shift
summary.owin Summary of a Spatial Window
rescue.rectangle Convert Window Back To Rectangle
Replace.im Reset Values in Subset of Image
superimpose Superimpose Several Geometric Patterns
affine.owin Apply Affine Transformation To Window
rotate.owin Rotate a Window
rescale.owin Convert Window to Another Unit of Length
shift.psp Apply Vector Translation To Line Segment Pattern
as.data.frame.im Convert Pixel Image to Data Frame
as.owin Convert Data To Class owin
stieltjes Compute Integral of Function Against Cumulative Distribution
as.function.fv Convert Function Value Table to Function
as.matrix.im Convert Pixel Image to Matrix or Array
split.ppx Divide Multidimensional Point Pattern into Sub-patterns
betacells Beta Ganglion Cells in Cat Retina
urkiola Urkiola Woods Point Pattern
corners Corners of a rectangle
clarkevans Clark and Evans Aggregation Index
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
demopat Artificial Data Point Pattern
deltametric Delta Metric
Extract.ppp Extract or Replace Subset of Point Pattern
Extract.listof Extract or Replace Subset of a List of Things
Extract.im Extract Subset of Image
endpoints.psp Endpoints of Line Segment Pattern
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
Gcom Model Compensator of Nearest Neighbour Function
hyperframe Hyper Data Frame
Gmulti Marked Nearest Neighbour Distance Function
Kcross.inhom Inhomogeneous Cross K Function
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
anova.ppm ANOVA for Fitted Point Process Models
MultiHard The Multitype Hard Core Point Process Model
envelope.envelope Recompute Envelopes
is.marked.ppp Test Whether A Point Pattern is Marked
matchingdist Distance for a Point Pattern Matching
Pairwise Generic Pairwise Interaction model
circumradius Circumradius and Diameter of a Linear Network
model.frame.ppm Extract the Variables in a Point Process Model
cut.im Convert Pixel Image from Numeric to Factor
nztrees New Zealand Trees Point Pattern
eval.fv Evaluate Expression Involving Functions
ants Harkness-Isham ants' nests data
pairsat.family Saturated Pairwise Interaction Point Process Family
fitted.ppm Fitted Conditional Intensity for Point Process Model
area.owin Area of a Window
as.box3 Convert Data to Three-Dimensional Box
linearK Linear K Function
as.tess Convert Data To Tessellation
owin.object Class owin
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
compatible.fasp Test Whether Function Arrays Are Compatible
logLik.ppm Log Likelihood and AIC for Point Process Model
plot.bermantest Plot Result of Berman Test
owin Create a Window
plot.kppm Plot a fitted cluster point process
methods.slrm Methods for Spatial Logistic Regression Models
predict.lppm Predict Point Process Model on Linear Network
pixellate.psp Convert Line Segment Pattern to Pixel Image
convexhull Convex Hull
density.psp Kernel Smoothing of Line Segment Pattern
diameter.owin Diameter of a Window
pp3 Three Dimensional Point Pattern
ewcdf Weighted Empirical Cumulative Distribution Function
print.im Print Brief Details of an Image
rMosaicSet Mosaic Random Set
ganglia Beta Ganglion Cells in Cat Retina, Old Version
rgbim Create Colour-Valued Pixel Image
print.ppp Print Brief Details of a Point Pattern Dataset
residualspaper Data and Code From JRSS Discussion Paper on Residuals
rlinegrid Generate grid of parallel lines with random displacement
rescale.ppp Convert Point Pattern to Another Unit of Length
with.fv Evaluate an Expression in a Function Table
rotate.psp Rotate a Line Segment Pattern
influence.ppm Influence Measure for Spatial Point Process Model
is.multitype Test whether Object is Multitype
rsyst Simulate systematic random point pattern
markvario Mark Variogram
mincontrast Method of Minimum Contrast
BadGey Hybrid Geyer Point Process Model
pairdist.default Pairwise distances
shift Apply Vector Translation
Fiksel The Fiksel Interaction
triplet.family Triplet Interaction Family
thomas.estK Fit the Thomas Point Process by Minimum Contrast
Hest Spherical Contact Distribution Function
varblock Estimate Variance of Summary Statistic by Subdivision
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
pool.rat Pool Data from Several Ratio Objects
pcfdot Multitype pair correlation function (i-to-any)
vertices Vertices of a Window
ripras Estimate window from points alone
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
rknn Theoretical Distribution of Nearest Neighbour Distance
bind.fv Combine Function Value Tables
volume Volume of an Object
as.ppp Convert Data To Class ppp
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
copper Berman-Huntington points and lines data
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
scan.test Spatial Scan Test
default.expand Default Expansion Rule for Simulation of Model
unmark Remove Marks
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
Lest L-function
fryplot Fry Plot of Point Pattern
Ord Generic Ord Interaction model
Poisson Poisson Point Process Model
inforder.family Infinite Order Interaction Family
lohboot Bootstrap Confidence Bands for Summary Function
plot.fasp Plot a Function Array
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
pool.envelope Pool Data from Several Envelopes
affine.im Apply Affine Transformation To Pixel Image
print.psp Print Brief Details of a Line Segment Pattern Dataset
affine.ppp Apply Affine Transformation To Point Pattern
allstats Calculate four standard summary functions of a point pattern.
as.psp Convert Data To Class psp
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
rNeymanScott Simulate Neyman-Scott Process
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
compatible Test Whether Objects Are Compatible
eval.im Evaluate Expression Involving Pixel Images
residuals.ppm Residuals for Fitted Point Process Model
rmpoispp Generate Multitype Poisson Point Pattern
inside.owin Test Whether Points Are Inside A Window
is.owin Test Whether An Object Is A Window
tess Create a Tessellation
localK Neighbourhood density function
methods.rhohat Methods for Intensity Functions of Spatial Covariate
murchison Murchison gold deposits
plot.ppm plot a Fitted Point Process Model
ppp Create a Point Pattern
rMatClust Simulate Matern Cluster Process
rLGCP Simulate Log-Gaussian Cox Process
rhohat Smoothing Estimate of Covariate Transformation
rcell Simulate Baddeley-Silverman Cell Process
runifpoint Generate N Uniform Random Points
runifpoint3 Generate N Uniform Random Points in Three Dimensions
simplify.owin Approximate a Polygon by a Simpler Polygon
spruces Spruces Point Pattern
tiles Extract List of Tiles in a Tessellation
which.max.im Identify Pixelwise Maximum of Several Pixel Images
Kest K-function
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
convexhull.xy Convex Hull of Points
gpc2owin Convert Polygonal Region into Different Format
formula.fv Extract or Change the Plot Formula for a Function Value Table
harmonic Basis for Harmonic Functions
is.stationary Recognise Stationary and Poisson Point Process Models
longleaf Longleaf Pines Point Pattern
lut Lookup Tables
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
methods.distfun Methods for Distance Functions
mucosa Cells in Gastric Mucosa
methods.box3 Methods for Three-Dimensional Box
plot.listof Plot a List of Things
plot.leverage.ppm Plot Leverage Function
quadrat.test.splitppp Dispersion Test of CSR for Split Point Pattern Based on Quadrat Counts
quadscheme Generate a Quadrature Scheme from a Point Pattern
rHardcore Perfect Simulation of the Hardcore Process
rMaternII Simulate Matern Model II
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
Extract.splitppp Extract or Replace Sub-Patterns
scanpp Read Point Pattern From Data File
simplenet Simple Example of Linear Network
Kcom Model Compensator of K Function
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
summary.listof Summary of a List of Things
Kdot Multitype K Function (i-to-any)
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
summary.quad Summarizing a Quadrature Scheme
convolve.im Convolution of Pixel Images
update.ppm Update a Fitted Point Process Model
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
envelope.lpp Envelope for Point Patterns on Linear Network
is.im Test Whether An Object Is A Pixel Image
ippm Optimise Irregular Trend Parameters in Point Process Model
kaplan.meier Kaplan-Meier Estimator using Histogram Data
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
nearestsegment Find Line Segment Nearest to Each Point
npfun Dummy Function Returns Number of Points
plot.layered Layered Plot
rSSI Simulate Simple Sequential Inhibition
smooth.ppp Spatial smoothing of observations at irregular points
simulate.kppm Simulate a Fitted Cluster Point Process Model
simulate.ppm Simulate a Fitted Gibbs Point Process Model
summary.ppp Summary of a Point Pattern Dataset
sumouter Compute Quadratic Forms
summary.splitppp Summary of a Split Point Pattern
zapsmall.im Rounding of Pixel Values
Extract.psp Extract Subset of Line Segment Pattern
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
Gres Residual G Function
Kinhom Inhomogeneous K-function
LambertW Lambert's W Function
Strauss The Strauss Point Process Model
Softcore The Soft Core Point Process Model
affine.psp Apply Affine Transformation To Line Segment Pattern
affine Apply Affine Transformation
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
finpines Pine saplings in Finland.
identify.psp Identify Segments in a Line Segment Pattern
heather Diggle's Heather Data
lansing Lansing Woods Point Pattern
istat Point and Click Interface for Exploratory Analysis of Point Pattern
periodify Make Periodic Copies of a Spatial Pattern
plot.colourmap Plot a Colour Map
plot.influence.ppm Plot Influence Measure
plot.tess Plot a tessellation
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
rMaternI Simulate Matern Model I
rat Ratio object
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
runifdisc Generate N Uniform Random Points in a Disc
anemones Beadlet Anemones Data
split.ppp Divide Point Pattern into Sub-patterns
contour.im Contour plot of pixel image
density.ppp Kernel Smoothed Intensity of Point Pattern
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
expand.owin Apply Expansion Rule
harmonise.im Make Pixel Images Compatible
is.convex Test Whether a Window is Convex
is.marked Test Whether Marks Are Present
nsegments Number of Line Segments in a Line Segment Pattern
pcf.ppp Pair Correlation Function of Point Pattern
rStrauss Perfect Simulation of the Strauss Process
ppx Multidimensional Space-Time Point Pattern
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
raster.x Cartesian Coordinates for a Pixel Raster
rpoint Generate N Random Points
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
centroid.owin Centroid of a window
clickjoin Interactively join vertices on a plot
clickppp Interactively Add Points
coef.ppm Coefficients of Fitted Point Process Model
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
fv.object Function Value Table
iplot Point and Click Interface for Displaying a Point Pattern
layered Create List of Plotting Layers
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
lpp Create Point Pattern on Linear Network
markcorr Mark Correlation Function
marks.psp Marks of a Line Segment Pattern
nnwhich.pp3 Nearest neighbours in three dimensions
opening Morphological Opening
pcfcross Multitype pair correlation function (cross-type)
pcf Pair Correlation Function
plot.envelope Plot a Simulation Envelope
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
rPoissonCluster Simulate Poisson Cluster Process
rjitter Random Perturbation of a Point Pattern
rescale.psp Convert Line Segment Pattern to Another Unit of Length
rshift.ppp Randomly Shift a Point Pattern
setcov Set Covariance of a Window
transect.im Pixel Values Along a Transect
valid.ppm Check Whether Point Process Model is Valid
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
whist Weighted Histogram
Kmulti Marked K-Function
angles.psp Orientation Angles of Line Segments
areaGain Difference of Disc Areas
as.rectangle Window Frame
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
compatible.fv Test Whether Function Objects Are Compatible
integral.im Integral of a Pixel Image
intensity.ppm Intensity of Fitted Point Process Model
model.images Compute Images of Constructed Covariates
methods.ppx Methods for Multidimensional Space-Time Point Patterns
multiplicity.ppp Count Multiplicity of Duplicate Points
nndist.ppx Nearest Neighbour Distances in Any Dimensions
pixelquad Quadrature Scheme Based on Pixel Grid
plot.linnet Plot a linear network
plot.ppp plot a Spatial Point Pattern
pppdist Distance Between Two Point Patterns
quadratcount Quadrat counting for a point pattern
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
predict.kppm Prediction from a Fitted Cluster Point Process Model
quantile.im Sample Quantiles of Pixel Image
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
rshift.psp Randomly Shift a Line Segment Pattern
summary.ppm Summarizing a Fitted Point Process Model
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
summary.psp Summary of a Line Segment Pattern Dataset
tile.areas Compute Areas of Tiles in a Tessellation
update.rmhcontrol Update Control Parameters of Metropolis-Hastings Algorithm
Hardcore The Hard Core Point Process Model
Jdot Multitype J Function (i-to-any)
Kcross Multitype K Function (Cross-type)
OrdThresh Ord's Interaction model
Kres Residual K Function
clip.infline Intersect Infinite Straight Lines with a Window
diameter Diameter of an Object
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
disc Circular Window
distmap.psp Distance Map of Line Segment Pattern
discretise Safely Convert Point Pattern Window to Binary Mask
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
gridweights Compute Quadrature Weights Based on Grid Counts
identify.ppp Identify Points in a Point Pattern
linearpcf Linear Pair Correlation Function
methods.boxx Methods for Multi-Dimensional Box
nncross Nearest Neighbours Between Two Patterns
nndist.pp3 Nearest neighbour distances in three dimensions
pairdist.lpp Pairwise shortest-path distances between points on a linear network
pool.fasp Pool Data from Several Function Arrays
plot.pp3 Plot a three-dimensional point pattern
pppmatching.object Class of Point Matchings
project2segment Move Point To Nearest Line
reach Interaction Distance of a Point Process
reduced.sample Reduced Sample Estimator using Histogram Data
runifpointx Generate N Uniform Random Points in Any Dimensions
selfcrossing.psp Crossing Points in a Line Segment Pattern
unitname Name for Unit of Length
will.expand Test Expansion Rule
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Details

Date 2012-08-23
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
LazyLoad true
ByteCompile true
Packaged 2012-08-23 09:52:09 UTC; adrian
Repository CRAN
Date/Publication 2012-08-23 12:07:28
depends base (>= 2.14.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.14.0) , stats , utils
suggests gpclib , gsl , locfit , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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