spatstat-internal

0th

Percentile

Internal spatstat functions

Internal spatstat functions.

Keywords
internal
Usage
## S3 method for class 'hyperframe':
[(x, i, j, drop=FALSE, ...)
## S3 method for class 'hyperframe':
[(x, i, j) <- value
## S3 method for class 'hyperframe':
$(x, name)
## S3 method for class 'hyperframe':
$(x, i) <- value
## S3 method for class 'splitppx':
[(x, ...)
## S3 method for class 'splitppx':
[(x, ...) <- value
acedist.show(X, Y, n, d, timelag = 0)
acedist.noshow(X, Y, n, d)
adjustthinrange(ur,vstep,vr)
affinexy(X, mat = diag(c(1, 1)), vec = c(0, 0), invert=FALSE)
affinexypolygon(p, mat, vec, detmat)
anycrossing.psp(A,B)
apply23sum(x)
area.xypolygon(polly)
areaGain.diri(u, X, r, ..., W=as.owin(X))
areaGain.grid(u, X, r, ..., W=NULL, ngrid=spatstat.options("ngrid.disc"))
areaLoss.diri(X, r, ..., W=as.owin(X), subset=NULL)
areaLoss.grid(X, r, ..., W=as.owin(X), subset=NULL,
                         method = c("count", "distmap"),
                         ngrid = spatstat.options("ngrid.disc"),
                         exact = FALSE)
assemble.plot.objects(xlim, ylim, ..., lines, polygon)
AsymmDistance.psp(X, Y, metric="Hausdorff", method="Fortran")
as.breakpts(...)
## S3 method for class 'fv':
as.data.frame(x, ...)
as.fv(x)
## S3 method for class 'hyperframe':
as.list(x, ...)
## S3 method for class 'scan.test':
as.im(X, \dots)
## S3 method for class 'linim':
as.im(X, \dots)
as.listof(x)
as.units(s)
badprobability(x, NAvalue)
beachcolours(heightrange, sealevel, monochrome, ncolours)
bermantestEngine(model, covariate, which, alternative, ..., modelname, covname, dataname)
bdrylength.xypolygon(polly)
bdry.mask(W)
bind.ratfv(x, numerator, denominator, labl, desc, preferred, ratio)
blankcoefnames(x)
breakpts(val, maxi, even = FALSE, npos = NULL, step = NULL)
breakpts.from.r(r)
bt.frame(Q, trend=~1, interaction=NULL, ..., covariates=NULL,
         correction="border", rbord=0, use.gam=FALSE, allcovar=FALSE)
bw.optim(cv, h, iopt, ..., xlab, ylab)
cartesian(pp, markset, fac = TRUE)
cat.factor(..., recursive=FALSE)
cellmiddles(W, nx, ny, npix, gi)
censtimeCDFest(o, cc, d, breaks, ..., KM, RS, HAN, RAW, han.denom,
pmax)
change.default.expand(x, newdefault)
checkfields(X,L)          
check.finite(x, context, xname)
check.hist.lengths(hist,breaks)
check.named.list(x, nam, context, namopt)
check.named.vector(x, nam, context, namopt)
check.named.thing(x, nam, namopt, xtitle, valid, type, context, fatal)
check.nvector(v, npoints, fatal=TRUE, things="data points", naok=FALSE)
check.nmatrix(m, npoints, fatal=TRUE, things="data points", naok=FALSE, squarematrix=TRUE)
check.1.real(x, context, fatal)
check.testfun(f, f1, X)
clarkevansCalc(X, correction, clipregion, working)
clip.psp(x, window, check=TRUE)
cliprect.psp(x, window)
clippoly.psp(s, window)
closepairs(X,rmax,ordered)
## S3 method for class 'summary.ppm':
coef(object, \dots)
## S3 method for class 'rat':
compatible(A, B, \dots)
complaining(whinge, fatal, value)
compileK(D, r, weights, denom, check, ratio)
compilepcf(D, r, weights, denom, check, endcorrect, ...)
conform.ratfv(x)
crosspairs(X,Y,rmax)
crosspaircounts(X,Y,r)
cobble.xy(x, y, f, fatal, ...)
codetime(x, hms)
commasep(x)
conform.imagelist(X, Zlist)
countingweights(id, areas, check = TRUE)
damaged.ppm(object)
datagen.runifpointOnLines(n, L)
datagen.runifpoisppOnLines(lambda, L)
datagen.rpoisppOnLines(lambda, L, lmax, ...)
default.clipwindow(object, epsilon)
default.n.tiling(X, nd, ntile, npix, eps, verbose)
default.ntile(X)
densitypointsEngine(x, sigma, ...,
                    weights, edge, varcov,
                    leaveoneout, diggle, sorted)
diagnose.ppm.engine(object, ..., type="eem", typename, opt,
                         sigma=NULL, rbord = reach(object), compute.sd=TRUE,
                         compute.cts=TRUE, rv=NULL, oldstyle=FALSE)
digital.volume(range, nval, vside)
dilate.owin(...)
## S3 method for class 'fasp':
dim(x)
## S3 method for class 'hyperframe':
dim(x)
## S3 method for class 'im':
dim(x)
## S3 method for class 'msr':
dim(x)
## S3 method for class 'fasp':
dimnames(x)
## S3 method for class 'fasp':
dimnames(x) <- value
## S3 method for class 'msr':
dimnames(x)
distpl(p, l)               
distppl(p, l)
distppll(p, l, mintype, method, listit)
distppllmin(p, l, big)
distributecbind(x)
dist2dpath(dist, method="C")
divisors(n)
do.as.im(x, action, ..., W, eps, dimyx, xy, na.replace)
do.call.matched(fun, arglist, funargs, extrargs)
do.iplot(panel)
do.istat(panel)
edge.Ripley(X, r, W, method, maxweight)
edge.Trans(X, Y, W, exact, paired, trim)
edge.Trans.modif(X, Y, WX, WY, exact, paired, trim)
emptywindow(w)
ensure2vector(x)
envelopeEngine(X, fun, simul,
           nsim=99, nrank=1, ..., 
           verbose=TRUE, clipdata=TRUE, 
           transform=NULL, global=FALSE, ginterval=NULL,
           savefuns=FALSE, savepatterns=FALSE, nsim2=nsim,
           VARIANCE=FALSE, nSD=2,
           Yname=NULL, maxnerr=nsim, internal=NULL, cl=NULL,
           envir.user=envir.user, expected.arg="r", do.pwrong=FALSE)
envelopeTest(X, ..., power, rinterval, use.theo, Xname, verbose, internal)
## S3 method for class 'matrix':
envelope(Y, ..., rvals, observed, theory, funX,
      nsim, nsim2, jsim, jsim.mean,
      type, csr, use.theory, nrank, ginterval, nSD,
      savefuns, check, Yname, do.pwrong)
equalpairs(U, X, marked=FALSE)
equalpairs.quad(Q)
equals.quad(Q)          
equalsfun.quad(Q)          
eratosthenes(nmax, startset)
erodemask(w,r,strict)
erode.owin(...)
evalCovar(model, covariate, ...,
          dimyx, eps, jitter, modelname, covname, dataname)
evalCovariate(covariate, locations)
evalInteraction(X,P,E,interaction,correction,...,precomputed,savecomputed)
evalInterEngine(X,P,E,interaction,correction,...,precomputed,savecomputed)
even.breaks.owin(w)
evenly.spaced(x, tol)
exactdt(X, ...)              
exactPdt(w)
explain.ifnot(expr, context)
## S3 method for class 'slrm':
extractAIC(fit, scale = 0, k = 2, ...)
extractAtomicQtests(x)
fave.order(x)
f3engine(x, y, z, box, vside, range, nval, correction)
f3Cengine(x, y, z, box, vside, rmax, nrval)
fasp(fns, which, formulae, dataname, title, rowNames, colNames)
findbestlegendpos(...)
findCovariate(covname, scope, scopename=NULL)
findcbind(root, depth, maxdepth)
firstfactor(x)
fii(interaction, coefs, Vnames, IsOffset)
fillNA(x, value)
flipxypolygon(p)
forbidNA(x, context, xname)
forbid.logi(object)
FormatFaspFormulae(f, argname)
fvlabels(x, expand=FALSE)
fvlabels(x) <- value
fvlabelmap(x, dot=TRUE)
fvlegend(object, elang)
fvnames(X, a)
fvnames(X, a) <- value
g3engine(x, y, z, box, rmax, nrval, correction)
g3Cengine(x, y, z, box, rmax, nrval)
gpcmethod(fname, signature)
greatest.common.divisor(n,m)
getdataname(defaultvalue, ..., dataname)
getfields(X, L, fatal = TRUE)
getglmdata(object, drop=FALSE)
getglmfit(object)
getglmsubset(object)
geyercounts(U,X,r,sat,Xcounts,EqualPairs)
GLMpredict(fit, data, coefs, changecoef)
good.names(nama, defaults, suffices)
gridindex(x, y, xrange, yrange, nx, ny)            
grid1index(x, xrange, nx)
grow.rectangle(W, xmargin=0, ymargin=xmargin)
handle.r.b.args(r = NULL, breaks = NULL, window, eps = NULL, rmaxdefault)
handle.rshift.args(W, ..., radius, width, height, edge, clip, edgedefault)
ho.engine(model, ..., nsim, nrmh, start, control, verb)
hsvNA(h, s, v, ...)
identical.formulae(x,y)
idorempty(w, r, caller)
implemented.for.K(correction, windowtype, explicit)
inpoint(W)
inside.triangle(x, y, xx, yy)
inside.xypolygon(pts, polly, test01, method)
instantiate.interact(x, par)
intersect.ranges(a,b,fatal)
intX.owin(w)
intX.xypolygon(polly)
intY.owin(w)
intY.xypolygon(polly)
is.atomicQtest(x)
is.cadlag(s)
is.data(Q)
is.expandable(x)
## S3 method for class 'ppm':
is.expandable(x)
## S3 method for class 'rmhmodel':
is.expandable(x)
is.fv(x)
is.hole.xypolygon(polly)
is.hyperframe(x)
is.infline(x)
is.interact(x)
## S3 method for class 'default':
is.marked(\dots)  
## S3 method for class 'psp':
is.marked(X, \dots)
## S3 method for class 'quad':
is.marked(X, na.action="warn", \dots)
## S3 method for class 'default':
is.multitype(X, \dots)  
## S3 method for class 'quad':
is.multitype(X, na.action="warn", \dots)
is.parseable(x)
is.pp3(x)
is.ppx(x)
is.prime(n)
is.psp(x)
is.slrm(x)
is.tess(x)
k3engine(x, y, z, box, rmax, nrval, correction)
Kborder.engine(X, rmax, nr, correction, weights, ratio)
Knone.engine(X, rmax, nr, weights, ratio)
Kount(dIJ, bI, b, breaks)
Kwtsum(dIJ, bI, wIJ, b, w, breaks)
Kpcf.kppm(model, what)
killinteraction(model)
km.rs.opt(o, cc, d, breaks, KM, RS)
## S3 method for class 'ppm':
labels(object, \dots)
least.common.multiple(n,m)
## S3 method for class 'im':
levels(x)
## S3 method for class 'im':
levels(x) <- value
lhs.of.formula(x)
linequad(X, Y, ..., eps, nd)
linearKengine(X, ..., r, reweight, denom, correction, showworking)
linearpcfengine(X, ..., r, reweight, denom, correction)
listof(...)
localKengine(X, ..., wantL, lambda, correction, verbose, rvalue)
localpcfengine(X, ..., delta, rmax, nr, stoyan, lambda)
localpcfmatrix(X, i, ..., lambda, delta, rmax, nr, stoyan)
local2lpp(L, seg, tp, X)
logi.engine(...)
passthrough(.Fun, ..., .Fname)
paste.expr(x)
## S3 method for class 'localpcfmatrix':
print(x, \dots)
## S3 method for class 'logippm':
print(x, \dots)
## S3 method for class 'localpcfmatrix':
plot(x, \dots)
## S3 method for class 'localpcfmatrix':
[(x, i, ...)
lookup.im(Z, x, y, naok, strict)
majorminorversion(v)
make.even.breaks(bmax, npos, bstep)
make.parseable(x)
makeunits(sing, plur, mul)
markappend(...)
markcbind(...)
markformat(x)
## S3 method for class 'ppp':
markformat(x)
## S3 method for class 'ppx':
markformat(x)
## S3 method for class 'psp':
markformat(x)
## S3 method for class 'default':
markformat(x)
mark.scale.default(marx, w, markscale=NULL, maxsize=NULL)
markspace.integral(X)
## S3 method for class 'default':
marks(x, \dots)
## S3 method for class 'quad':
marks(x, dfok=FALSE, \dots)
markappendop(x, y)
marksubset(x, index, format)
marksubsetop(x, i)
markreplicateop(x, n)
mask2df(w)
matcolall(x)
matcolany(x)
matcolsum(x)            
matrixsample(mat, newdim, phase, scale, na.value)
matrowall(x)
matrowany(x)
matrowsum(x)
maxflow(costm)
meanlistfv(z)
meanX.owin(w)            
meanY.owin(w)
model.se.image(fit, W, ..., what)
mpl.engine(Q, trend, interaction, ..., covariates, covfunargs, correction,
	 rbord, use.gam, gcontrol, famille,
         forcefit, nd, eps, allcovar, callstring,
         precomputed, savecomputed, preponly,
         rename.intercept, justQ)
mpl.get.covariates(covariates, locations, type, covfunargs)
mpl.prepare(Q, X, P, trend, interaction, covariates, 
            want.trend, want.inter, correction, rbord, Pname,
            callstring, ...,
            covfunargs, allcovar, precomputed, savecomputed,
            vnamebase, vnameprefix, warn.illegal)
MultiPair.checkmatrix(mat, n, matname, naok, zerook)
multiply.only.finite.entries(x, a)
na.handle.im(X, na.replace)
## S3 method for class 'hyperframe':
names(x)
## S3 method for class 'hyperframe':
names(x) <- value
nearest.pixel(x, y, im)
nearest.valid.pixel(x, y, im)
newstyle.coeff.handling(object)
nncleanEngine(kthNND, k, d, ..., tol, plothist, verbose, maxit)
nndcumfun(X, ..., r)
no.trend.ppm(x)
nobjects(x)
## S3 method for class 'ppp':
nobjects(x)
## S3 method for class 'ppx':
nobjects(x)
## S3 method for class 'psp':
nobjects(x)
n.quad(Q)
numalign(i, nmax, zero)
numeric.columns(M, logical, others)
nzpaste(..., sep, collapse)
offsetsinformula(x)
onecolumn(m)
ordinal(k)
outdated.interact(object)
overlap.owin(A,B)
overlap.trapezium(xa, ya, xb, yb, verb = FALSE)
overlap.xypolygon(P, Q)
oversize.quad(Q, ..., nU, nX)
owinpolycheck(W, verbose=TRUE)
owinpoly2mask(w, rasta, check=TRUE)
## S3 method for class 'listof':
pairs(\dots, plot=TRUE)
param.quad(Q)
paren(x, type)
partialModelMatrix(X,D,model,callstring,...)
pcf3engine(x, y, z, box, rmax, nrval, correction, delta)
pcfmulti.inhom(X, I, J, lambdaI = NULL, lambdaJ = NULL, ...,
               r = NULL, breaks = NULL,
               kernel = "epanechnikov", bw = NULL, stoyan = 0.15,
               correction = c("translate", "Ripley"),
               sigma = NULL, varcov = NULL,
               Iname = "points satisfying condition I",
               Jname = "points satisfying condition J")
pickoption(what="option", key, keymap, ...,
           exact=FALSE, list.on.err=TRUE, die=TRUE, multi=FALSE)
ploterodewin(W1, W2, col.edge, col.inside, ...)
ploterodeimage(W, Z, ..., Wcol, rangeZ, colsZ)
## S3 method for class 'addvar':
plot(x, \dots, do.points=FALSE)
## S3 method for class 'barplotdata':
plot(x, \dots)
## S3 method for class 'bw.optim':
plot(x, \dots, add)
## S3 method for class 'fii':
plot(x, \dots)
## S3 method for class 'minconfit':
plot(x, \dots)
## S3 method for class 'parres':
plot(x, \dots)
## S3 method for class 'pppmatching':
plot(x, addmatch = NULL, main = NULL, \dots)
## S3 method for class 'plotpairsim':
plot(x, \dots)
## S3 method for class 'profilepl':
plot(x, \dots, add=FALSE, main=NULL, tag=TRUE, coeff=NULL, xvariable=NULL)
## S3 method for class 'qqppm':
plot(x, \dots, limits=TRUE, monochrome=FALSE,
           limcol=if(monochrome) "black" else "red")
## S3 method for class 'quadratcount':
plot(x, \dots, add, entries, dx, dy, show.tiles)
## S3 method for class 'quadrattest':
plot(x, \dots)
## S3 method for class 'scan.test':
plot(x, \dots, do.window)
polynom(x, ...)
ppllengine(X, Y, action="project", check=FALSE)
ppmCovariates(model)
ppm.influence(fit,
   what = c("leverage","influence","dfbetas","derivatives"),
   ..., iScore = NULL, iHessian = NULL, iArgs=list(), drop = FALSE,
   method=c("C", "interpreted"))
pppdist.mat(X, Y, cutoff = 1, q = 1, matching = TRUE, precision = 9, approximation = 10)
pppdist.prohorov(X, Y, n, dfix, type, cutoff = 1, matching = TRUE, ccode = TRUE, precision = 9, approximation = 10) 
ppsubset(X, I)
prange(x)
prefixfv(x, tagprefix, descprefix, lablprefix, whichtags)
primefactors(n, prmax)
primesbelow(nmax)
## S3 method for class 'addvar':
print(x, \dots)
## S3 method for class 'bt.frame':
print(x, \dots)
## S3 method for class 'bw.optim':
print(x, \dots)
## S3 method for class 'colourmap':
print(x, \dots)
## S3 method for class 'diagppm':
print(x, \dots)
## S3 method for class 'distfun':
print(x, \dots)
## S3 method for class 'envelope':
print(x, \dots)
## S3 method for class 'fasp':
print(x, \dots)
## S3 method for class 'fii':
print(x, \dots)
## S3 method for class 'funxy':
print(x, \dots)
## S3 method for class 'fv':
print(x, \dots)
## S3 method for class 'hyperframe':
print(x, ...)
## S3 method for class 'interact':
print(x, \dots, family=TRUE, brief=FALSE)       
## S3 method for class 'isf':
print(x, \dots)
## S3 method for class 'layered':
print(x, \dots)
## S3 method for class 'linim':
print(x, \dots)
## S3 method for class 'lut':
print(x, \dots)
## S3 method for class 'minconfit':
print(x, \dots)
## S3 method for class 'msr':
print(x, \dots)
## S3 method for class 'nnfun':
print(x, \dots)
## S3 method for class 'parres':
print(x, \dots)
## S3 method for class 'plotppm':
print(x, \dots)
## S3 method for class 'plotpairsim':
print(x, \dots)
## S3 method for class 'pppmatching':
print(x, \dots)
## S3 method for class 'profilepl':
print(x, \dots)
## S3 method for class 'quadrattest':
print(x, \dots)
## S3 method for class 'qqppm':
print(x, \dots)
## S3 method for class 'rat':
print(x, \dots)
## S3 method for class 'rmhcontrol':
print(x, \dots)
## S3 method for class 'rmhexpand':
print(x, \dots, prefix=TRUE)
## S3 method for class 'rmhmodel':
print(x, \dots)
## S3 method for class 'rmhstart':
print(x, \dots)
## S3 method for class 'rmhInfoList':
print(x, \dots)
## S3 method for class 'splitppp':
print(x, \dots)
## S3 method for class 'splitppx':
print(x, \dots)
## S3 method for class 'summary.fii':
print(x, \dots)
## S3 method for class 'summary.hyperframe':
print(x, ...)
## S3 method for class 'summary.listof':
print(x, \dots)
## S3 method for class 'summary.lut':
print(x, \dots)
## S3 method for class 'summary.owin':
print(x, \dots)
## S3 method for class 'summary.ppp':
print(x, \dots, dp=3)
## S3 method for class 'summary.psp':
print(x, \dots)
## S3 method for class 'summary.rmhexpand':
print(x, \dots)
## S3 method for class 'summary.splitppp':
print(x, \dots)
## S3 method for class 'summary.splitppx':
print(x, \dots)
## S3 method for class 'summary.units':
print(x, \dots)
## S3 method for class 'tess':
print(x, \dots, brief=FALSE)
prolongseq(x, newrange)
quad(data, dummy, w, param)
RandomFieldsSafe()
ratfv(df, numer, denom, ..., ratio)
rectquadrat.breaks(xr, yr, nx = 5, ny = nx, xbreaks = NULL, ybreaks = NULL)
rectquadrat.countEngine(x, y, xbreaks, ybreaks, weights)
repair.image.xycoords(x)
rgbNA(red, green, blue, ...)
rhs.of.formula(x)
RmhExpandRule(nama)
quadrat.testEngine(X, nx, ny, alternative, method, conditional, ..., nsim, Xcount, xbreaks, ybreaks, tess, fit, Xname, fitname)
quadscheme.replicated(data, dummy, method = "grid", ...)
quadscheme.spatial(data, dummy, method = "grid", ...)
pointgrid(W, ngrid)
rastersample(X, Y)
rasterx.im(x)
rastery.im(x)
## S3 method for class 'fii':
reach(x, \dots, epsilon)
rebadge.fv(x, new.ylab, new.fname, tags, new.desc, new.labl, new.yexp,
new.dotnames, new.preferred, new.formula, new.tags)
rebound(x, rect)
## S3 method for class 'im':
rebound(x, rect)
## S3 method for class 'ppp':
rebound(x, rect)
## S3 method for class 'psp':
rebound(x, rect)
## S3 method for class 'owin':
rebound(x, rect)
reconcile.fv(...)
repair.old.factor.image(x)
reincarnate.interact(object)
resid4plot(RES, plot.neg="image", plot.smooth="imagecontour",
           spacing=0.1, srange=NULL,monochrome=FALSE, main=NULL, ...)
resid1plot(RES, opt, plot.neg="image", plot.smooth="imagecontour",
              srange=NULL, monochrome=FALSE, main=NULL, ...)
resid1panel(observedX, observedV,
            theoreticalX, theoreticalV, theoreticalSD, xlab,ylab, ...)
resolve.defaults(..., .MatchNull=TRUE, .StripNull=FALSE)
resolve.1.default(.A, ...)
resolve.2D.kernel(..., sigma, varcov, x, mindist, adjust, bwfun)
restrict.mask(M, W)
reverse.xypolygon(p, adjust=FALSE)
revcumsum(x)
rmax.rule(fun, W, lambda)
rotxy(X, angle = pi/2)
rotxypolygon(p, angle = pi/2)
rmhResolveControl(control, model)
rmhResolveExpansion(win, control, imagelist, itype)
rmhResolveTypes(model, start, control)
## S3 method for class 'rmhcontrol':
rmhcontrol(\dots)
## S3 method for class 'list':
rmhcontrol(\dots)
rmhEngine(InfoList, ..., verbose, kitchensink, preponly) 
## S3 method for class 'rmhmodel':
rmhmodel(model, \dots)
## S3 method for class 'rmhstart':
rmhstart(start, \dots)
## S3 method for class 'list':
rmhstart(start, \dots)
rmpoint.I.allim(n, f, types)
## S3 method for class 'hyperframe':
row.names(x)
## S3 method for class 'hyperframe':
row.names(x) <- value
rpoint.multi(n, f, fmax, marks, win, giveup, verbose, warn)
runifpoispp(lambda, win = owin(c(0, 1), c(0, 1)))
runifpoisppOnLines(lambda, L)
runifrect(n, win = owin(c(0, 1), c(0, 1)))
safelookup(Z, X, factor, warn)
samefunction(f, g)
scanmeasure(X, ...)
## S3 method for class 'ppp':
scanmeasure(X, r, \dots, method)
## S3 method for class 'im':
scanmeasure(X, r, \dots)
scanPoisLRTS(nZ, nG, muZ, muG, alternative)
scanBinomLRTS(nZ, nG, muZ, muG, alternative)
scanLRTS(X, r, ..., method, baseline, case, alternative)
second.moment.calc(x, sigma=NULL, edge=TRUE, what="Kmeasure", debug=FALSE,
..., varcov=NULL, expand=FALSE)
second.moment.engine(x, sigma=NULL, edge=TRUE, what="Kmeasure", debug=FALSE,
..., obswin=as.owin(x), varcov=NULL, npts=NULL)
sensiblevarname(guess, fallback, maxlen)
sewpcf(d, w, denargs, lambda2area)
sewsmod(d, ff, wt, Ef, rvals, method="smrep", ..., nwtsteps=500)
shiftxy(X, vec = c(0, 0))
shiftxypolygon(p, vec = c(0, 0))
short.deparse(x, maxlen)
simplify.xypolygon(p, dmin)
simulrecipe(type, expr, envir, csr, pois)
singlestring(s, coll)
slr.prepare(CallInfo, envir, data, dataAtPoints, splitby, clip)
slrAssemblePixelData(Y, Yname, W, covimages, dataAtPoints, pixelarea)
smoothpointsEngine(x, values, sigma, ...,
                    weights, varcov, leaveoneout, sorted)
## S3 method for class 'im':
sort(x, \dots)
spatstat.rawdata.location(...)
spatialCDFframe(model, covariate, ...)
spatialCDFtest(model, covariate, test, ..., dimyx, eps, jitter, modelname, covname, dataname)
sphere.volume(range, nval = 10)
sp.foundclass(cname, inlist, formalname, argsgiven)             
sp.foundclasses(cnames, inlist, formalname, argsgiven)
store.versionstring.spatstat()
## S3 method for class 'hyperframe':
str(object, \dots)
stratrand(window, nx, ny, k = 1)
strausscounts(U,X,r,EqualPairs)
suffloc(object)
suffstat.generic(model, X, callstring)
suffstat.poisson(model, X, callstring)
summarise.trend(trend, w, a)
## S3 method for class 'envelope':
summary(object,\dots)
## S3 method for class 'fii':
summary(object,\dots)
## S3 method for class 'hyperframe':
summary(object, ..., brief=FALSE)
## S3 method for class 'logippm':
summary(object, \dots)
## S3 method for class 'lut':
summary(object, \dots)
## S3 method for class 'profilepl':
summary(object, \dots)
## S3 method for class 'pppmatching':
summary(object, \dots)
## S3 method for class 'ppx':
summary(object, \dots)
## S3 method for class 'rmhexpand':
summary(object, \dots)
## S3 method for class 'splitppx':
summary(object, \dots)
superimposeMarks(arglist, nobj)
sympoly(x, y, n)
termsinformula(x)
test.crossing.psp(A,B)
test.selfcrossing.psp(A)
tilecentroids(W, nx, ny)
tilenames(x)
trap.extra.arguments(..., .Context, .Fatal)
trianglediameters(iedge, jedge, edgelength, ..., nvert, check)
trim.mask(M, R, tolerant)
tweak.fv.entry(x, current.tag, new.labl=NULL, new.desc=NULL, new.tag=NULL)
## S3 method for class 'default':
unitname(x)
## S3 method for class 'default':
unitname(x) <- value
## S3 method for class 'interact':
update(object, \dots)
## S3 method for class 'rmhstart':
update(object, \dots)
## S3 method for class 'slrm':
update(object, ..., evaluate = TRUE, env = parent.frame())
validradius(r, caller)
validate.mask(w, fatal=TRUE)        
validate.quad(Q, fatal, repair, announce)
validposint(n, caller, fatal)
vanilla.fv(x)
variablesinformula(x)
verbalogic(x, op)
versionstring.interact(object)
versionstring.ppm(object)
versionstring.spatstat()
verifyclass(X, C, N = deparse(substitute(X)), fatal = TRUE)
verify.xypolygon(p, fatal=TRUE)
warn.ignored.args(..., context)
## S3 method for class 'msr':
with(data, expr, \dots)
w.quad(Q)               
x.quad(Q)
y.quad(Q)
X2testEngine(OBS, EXP, ..., method, df, nsim, conditional, alternative, testname, dataname)
## S3 method for class 'im':
xtfrm(x)
xypolyselfint(p, eps, proper, yesorno, checkinternal)
xypolygon2psp(p, w, check)
Details

These are usually not to be called by the user.

Aliases
  • [.hyperframe
  • [<-.hyperframe
  • $.hyperframe
  • $<-.hyperframe
  • [.localpcfmatrix
  • [.splitppx
  • [<-.splitppx
  • acedist.show
  • acedist.noshow
  • adjustthinrange
  • affinexy
  • affinexypolygon
  • anycrossing.psp
  • apply23sum
  • area.xypolygon
  • areaGain.diri
  • areaGain.grid
  • areaLoss.diri
  • areaLoss.grid
  • assemble.plot.objects
  • AsymmDistance.psp
  • as.breakpts
  • as.data.frame.fv
  • as.fv
  • as.im.scan.test
  • as.im.linim
  • as.list.hyperframe
  • as.listof
  • as.units
  • badprobability
  • beachcolours
  • bermantestEngine
  • bdrylength.xypolygon
  • bdry.mask
  • bind.ratfv
  • blankcoefnames
  • breakpts
  • breakpts.from.r
  • bt.frame
  • bw.optim
  • cartesian
  • cat.factor
  • cellmiddles
  • censtimeCDFest
  • change.default.expand
  • checkfields
  • check.finite
  • check.hist.lengths
  • check.named.list
  • check.named.thing
  • check.named.vector
  • check.nvector
  • check.nmatrix
  • check.1.real
  • check.testfun
  • clarkevansCalc
  • clip.psp
  • cliprect.psp
  • clippoly.psp
  • closepairs
  • coef.summary.ppm
  • compatible.rat
  • complaining
  • compileK
  • compilepcf
  • conform.ratfv
  • crosspairs
  • crosspaircounts
  • cobble.xy
  • codetime
  • commasep
  • conform.imagelist
  • countingweights
  • damaged.ppm
  • datagen.runifpointOnLines
  • datagen.runifpoisppOnLines
  • datagen.rpoisppOnLines
  • default.clipwindow
  • default.n.tiling
  • default.ntile
  • densitypointsEngine
  • diagnose.ppm.engine
  • digital.volume
  • dilate.owin
  • dim.fasp
  • dim.hyperframe
  • dim.im
  • dim.msr
  • dimnames.fasp
  • dimnames<-.fasp
  • dimnames.msr
  • distpl
  • distppl
  • distppll
  • distppllmin
  • distributecbind
  • dist2dpath
  • divisors
  • do.as.im
  • do.call.matched
  • do.iplot
  • do.istat
  • edge.Ripley
  • edge.Trans
  • edge.Trans.modif
  • emptywindow
  • ensure2vector
  • envelopeEngine
  • envelopeTest
  • envelope.matrix
  • equalpairs
  • equalpairs.quad
  • equals.quad
  • equalsfun.quad
  • eratosthenes
  • erodemask
  • erode.owin
  • evalCovar
  • evalCovariate
  • evalInteraction
  • evalInterEngine
  • even.breaks.owin
  • evenly.spaced
  • exactdt
  • exactPdt
  • explain.ifnot
  • extractAIC.slrm
  • extractAtomicQtests
  • fave.order
  • f3engine
  • f3Cengine
  • fasp
  • findbestlegendpos
  • findCovariate
  • findcbind
  • firstfactor
  • fii
  • fillNA
  • flipxypolygon
  • forbidNA
  • forbid.logi
  • FormatFaspFormulae
  • fvlabels
  • fvlabels<-
  • fvlabelmap
  • fvlegend
  • fvnames
  • fvnames<-
  • g3engine
  • g3Cengine
  • gpcmethod
  • greatest.common.divisor
  • getdataname
  • getfields
  • getglmdata
  • getglmfit
  • getglmsubset
  • geyercounts
  • GLMpredict
  • good.names
  • gridindex
  • grid1index
  • grow.rectangle
  • handle.r.b.args
  • handle.rshift.args
  • ho.engine
  • hsvNA
  • identical.formulae
  • idorempty
  • implemented.for.K
  • inpoint
  • inside.triangle
  • inside.xypolygon
  • instantiate.interact
  • intersect.ranges
  • intX.owin
  • intX.xypolygon
  • intY.owin
  • intY.xypolygon
  • is.atomicQtest
  • is.cadlag
  • is.data
  • is.expandable
  • is.expandable.ppm
  • is.expandable.rmhmodel
  • is.fv
  • is.hole.xypolygon
  • is.hyperframe
  • is.infline
  • is.interact
  • is.marked.default
  • is.marked.psp
  • is.marked.quad
  • is.multitype.quad
  • is.multitype.default
  • is.parseable
  • is.pp3
  • is.ppx
  • is.prime
  • is.psp
  • is.slrm
  • is.tess
  • k3engine
  • Kborder.engine
  • Knone.engine
  • Kount
  • Kwtsum
  • Kpcf.kppm
  • killinteraction
  • km.rs.opt
  • labels.ppm
  • least.common.multiple
  • levels.im
  • levels<-.im
  • lhs.of.formula
  • linequad
  • linearKengine
  • linearpcfengine
  • listof
  • localKengine
  • localpcfengine
  • localpcfmatrix
  • local2lpp
  • logi.engine
  • passthrough
  • paste.expr
  • lookup.im
  • majorminorversion
  • make.even.breaks
  • make.parseable
  • makeunits
  • markappend
  • markcbind
  • markformat
  • markformat.ppp
  • markformat.ppx
  • markformat.psp
  • markformat.default
  • mark.scale.default
  • markspace.integral
  • marks.default
  • marks.quad
  • %mapp%
  • markappendop
  • marksubset
  • markreplicateop
  • %mrep%
  • marksubsetop
  • %msub%
  • mask2df
  • matcolall
  • matcolany
  • matcolsum
  • matrixsample
  • matrowall
  • matrowany
  • matrowsum
  • maxflow
  • meanlistfv
  • meanX.owin
  • meanY.owin
  • model.se.image
  • mpl.engine
  • mpl.get.covariates
  • mpl.prepare
  • MultiPair.checkmatrix
  • multiply.only.finite.entries
  • na.handle.im
  • names.hyperframe
  • names<-.hyperframe
  • nearest.pixel
  • nearest.valid.pixel
  • newstyle.coeff.handling
  • nncleanEngine
  • nndcumfun
  • no.trend.ppm
  • nobjects
  • nobjects.ppp
  • nobjects.ppx
  • nobjects.psp
  • n.quad
  • numalign
  • numeric.columns
  • nzpaste
  • offsetsinformula
  • onecolumn
  • ordinal
  • outdated.interact
  • overlap.owin
  • overlap.trapezium
  • overlap.xypolygon
  • oversize.quad
  • owinpolycheck
  • owinpoly2mask
  • pairs.listof
  • param.quad
  • paren
  • partialModelMatrix
  • pcf3engine
  • pcfmulti.inhom
  • pickoption
  • ploterodewin
  • ploterodeimage
  • plot.addvar
  • plot.barplotdata
  • plot.bw.optim
  • plot.fii
  • plot.localpcfmatrix
  • plot.minconfit
  • plot.parres
  • plot.plotpairsim
  • plot.pppmatching
  • plot.profilepl
  • plot.qqppm
  • plot.quadratcount
  • plot.quadrattest
  • plot.scan.test
  • polynom
  • ppllengine
  • ppmCovariates
  • ppm.influence
  • pppdist.mat
  • pppdist.prohorov
  • ppsubset
  • prange
  • prefixfv
  • primefactors
  • primesbelow
  • print.addvar
  • print.bt.frame
  • print.bw.optim
  • print.colourmap
  • print.diagppm
  • print.distfun
  • print.envelope
  • print.fasp
  • print.fii
  • print.fv
  • print.funxy
  • print.hyperframe
  • print.interact
  • print.isf
  • print.layered
  • print.linim
  • print.localpcfmatrix
  • print.logippm
  • print.lut
  • print.minconfit
  • print.msr
  • print.nnfun
  • print.parres
  • print.plotpairsim
  • print.plotppm
  • print.pppmatching
  • print.profilepl
  • print.quadrattest
  • print.qqppm
  • print.rat
  • print.rmhcontrol
  • print.rmhexpand
  • print.rmhmodel
  • print.rmhstart
  • print.rmhInfoList
  • print.splitppp
  • print.splitppx
  • print.summary.fii
  • print.summary.hyperframe
  • print.summary.listof
  • print.summary.lut
  • print.summary.owin
  • print.summary.ppp
  • print.summary.psp
  • print.summary.rmhexpand
  • print.summary.splitppp
  • print.summary.splitppx
  • print.summary.units
  • print.tess
  • prolongseq
  • quad
  • RandomFieldsSafe
  • ratfv
  • rectquadrat.breaks
  • rectquadrat.countEngine
  • repair.image.xycoords
  • rgbNA
  • rhs.of.formula
  • RmhExpandRule
  • quadrat.testEngine
  • quadscheme.replicated
  • quadscheme.spatial
  • pointgrid
  • rastersample
  • rasterx.im
  • rastery.im
  • reach.fii
  • rebadge.fv
  • rebound
  • rebound.im
  • rebound.ppp
  • rebound.psp
  • rebound.owin
  • reconcile.fv
  • repair.old.factor.image
  • reincarnate.interact
  • resid4plot
  • resid1plot
  • resid1panel
  • resolve.defaults
  • resolve.1.default
  • resolve.2D.kernel
  • restrict.mask
  • reverse.xypolygon
  • revcumsum
  • rmax.rule
  • rotxy
  • rotxypolygon
  • row.names.hyperframe
  • row.names<-.hyperframe
  • runifpoispp
  • runifpoisppOnLines
  • runifrect
  • rmhResolveControl
  • rmhResolveExpansion
  • rmhResolveTypes
  • rmhcontrol.rmhcontrol
  • rmhcontrol.list
  • rmhEngine
  • rmhmodel.rmhmodel
  • rmhstart.rmhstart
  • rmhstart.list
  • rmpoint.I.allim
  • rpoint.multi
  • safelookup
  • samefunction
  • scanmeasure
  • scanmeasure.ppp
  • scanmeasure.im
  • scanBinomLRTS
  • scanPoisLRTS
  • scanLRTS
  • second.moment.calc
  • second.moment.engine
  • sensiblevarname
  • sewpcf
  • sewsmod
  • shiftxy
  • shiftxypolygon
  • short.deparse
  • simplify.xypolygon
  • simulrecipe
  • singlestring
  • slr.prepare
  • slrAssemblePixelData
  • smoothpointsEngine
  • sort.im
  • spatstat.rawdata.location
  • spatialCDFframe
  • spatialCDFtest
  • sp.foundclass
  • sp.foundclasses
  • sphere.volume
  • store.versionstring.spatstat
  • str.hyperframe
  • stratrand
  • strausscounts
  • suffloc
  • suffstat.generic
  • suffstat.poisson
  • summarise.trend
  • summary.envelope
  • summary.fii
  • summary.hyperframe
  • summary.logippm
  • summary.lut
  • summary.profilepl
  • summary.pppmatching
  • summary.ppx
  • summary.splitppx
  • summary.rmhexpand
  • superimposeMarks
  • sympoly
  • termsinformula
  • test.crossing.psp
  • test.selfcrossing.psp
  • tilecentroids
  • tilenames
  • trap.extra.arguments
  • trianglediameters
  • trim.mask
  • tweak.fv.entry
  • unitname.default
  • unitname<-.default
  • update.interact
  • update.rmhstart
  • update.slrm
  • validradius
  • validate.mask
  • validate.quad
  • validposint
  • vanilla.fv
  • variablesinformula
  • verbalogic
  • versionstring.interact
  • versionstring.ppm
  • versionstring.spatstat
  • verifyclass
  • verify.xypolygon
  • warn.ignored.args
  • with.msr
  • w.quad
  • x.quad
  • y.quad
  • X2testEngine
  • xtfrm.im
  • xypolygon2psp
  • xypolyselfint
Documentation reproduced from package spatstat, version 1.29-0, License: GPL (>= 2)

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