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spatstat (version 1.3-4)

Analysis of spatial point patterns

Description

Spatial Point Pattern data analysis, modelling and simulation including multitype/marked points and spatial covariates

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Version

Install

install.packages('spatstat')

Monthly Downloads

21,281

Version

1.3-4

License

GPL version 2 or newer

Maintainer

Adrian Baddeley

Last Published

March 22nd, 2025

Functions in spatstat (1.3-4)

cells

Biological Cells Point Pattern
dirichlet.weights

Compute Quadrature Weights Based on Dirichlet Tessellation
hamster

Aherne's hamster tumour data
pairdist

Pairwise distances
ppm.object

Class of Fitted Point Process Models
spokes

Spokes pattern of dummy points
applynbd

Apply Function to Every Neighbourhood in a Point Pattern
DiggleGratton

Diggle-Gratton model
MultiStraussHard

The Multitype/Hard Core Strauss Point Process Model
allstats

Calculate four standard summary functions of a point pattern.
plot.ppm

plot a Fitted Point Process Model
ksmooth.ppp

Kernel Smoothed Intensity of Point Pattern
quad.object

Class of Quadrature Schemes
diameter

Diameter of a Window Frame
harmonic

Basis for Harmonic Functions
stratrand

Stratified random point pattern
is.marked

Test Whether Marks Are Present
rNeymanScott

Simulate Neyman-Scott Process
kaplan.meier

Kaplan-Meier Estimator using Histogram Data
rMaternI

Simulate Matern Model I
nearest.raster.point

Find Pixel Nearest to a Given Point
quadscheme

Generate a Quadrature Scheme from a Point Pattern
rMaternII

Simulate Matern Model II
Jdot

Multitype J Function (i-to-any)
rotate.ppp

Rotate a Point Pattern
rpoispp

Generate Poisson Point Pattern
as.owin

Convert Data To Class owin
Kmulti

Marked K-Function
as.mask

Pixel Image Approximation of a Window
gridweights

Compute Quadrature Weights Based on Grid Counts
OrdThresh

Ord's Interaction model
demopat

Artificial Data Point Pattern
nztrees

New Zealand Trees Point Pattern
plot.owin

Plot a Spatial Window
raster.x

Cartesian Coordinates for a Pixel Raster
simdat

Simulated Point Pattern
Fest

Estimate the empty space function F
subset.fasp

Extract Subset of Function Array
rmh.ppm

Simulate from a Fitted Point Process Model
Kmeasure

Reduced Second Moment Measure
as.ppp

Convert Data To Class ppp
is.marked.ppp

Test Whether A Point Pattern is Marked
Jmulti

Marked J Function
ripras

Estimate window from points alone
LennardJones

The Lennard-Jones Potential
alltypes

Calculate Statistic for All Types in a Multitype Point Pattern
amacrine

Hughes' Amacrine Cell Data
Pairwise

Generic Pairwise Interaction model
erode.owin

Erode a Window
MultiStrauss

The Multitype Strauss Point Process Model
Ord

Generic Ord Interaction model
bdist.points

Distance to Boundary of Window
bounding.box

Bounding Box of a Window
owin.object

Class owin
im

Create a Pixel Image Object
spatstat.options

Internal Options in Spatstat Package
area.owin

Area of a Window
identify.ppp

Identify Points in a Point Pattern
cut.ppp

Convert Point Pattern Marks from Numeric to Factor
plot.ppp

plot a Spatial Point Pattern
complement.owin

Take Complement of a Window
nndist

Nearest neighbour distances
rThomas

Simulate Thomas Process
unmark

Remove Marks from a Marked Point Pattern
rMatClust

Simulate Matern Cluster Process
redwoodfull

California Redwoods Point Pattern (Entire Dataset)
subset.ppp

Extract Subset of Point Pattern
quad.ppm

Extract Quadrature Scheme Used to Fit a Point Process Model
summary.owin

Summary of a Spatial Window
Gest

Nearest Neighbour Distance Function G
Kdot

Multitype K Function (i-to-any)
Kest

K-function
Kinhom

Inhomogeneous K-function
longleaf

Longleaf Pines Point Pattern
default.dummy

Generate a Default Pattern of Dummy Points
affine

Apply Affine Transformation
coef.ppm

Coefficients of Fitted Point Process Model
ganglia

Cat Retinal Ganglia Data
gridcentres

Rectangular grid of points
rmh.default

Simulate Point Process Models using the Metropolis-Hastings Algorithm.
shift.im

Apply Vector Translation To Pixel Image
redwood

California Redwoods Point Pattern (Ripley's Subset)
Kest.fft

K-function using FFT
Gcross

Multitype Nearest Neighbour Distance Function (i-to-j)
is.marked.ppm

Test Whether A Point Process Model is Marked
ppp

Create a Point Pattern
rSSI

Simple Sequential Inhibition
Geyer

Geyer's Saturation Point Process Model
ppp.object

Class of Point Patterns
concatxy

Concatenate x,y Coordinate Vectors
ord.family

Ord Interaction Process Family
square

Square Window
Gdot

Multitype Nearest Neighbour Distance Function (i-to-any)
Softcore

The Soft Core Point Process Model
as.rectangle

Window Frame
pairsat.family

Saturated Pairwise Interaction Point Process Family
letterR

Window in Shape of Letter R
owin

Create a Window
fitted.ppm

Fitted Conditional Intensity for Point Process Model
summary.ppp

Summary of a Point Pattern Dataset
Poisson

Poisson Point Process Model
Saturated

Saturated Pairwise Interaction model
markcorr

Mark Correlation Function
pcf

Pair Correlation Function
Jest

Estimate the J-function
rotate.owin

Rotate a Window
shift.ppp

Apply Vector Translation To Point Pattern
Strauss

The Strauss Point Process Model
affine.owin

Apply Affine Transformation To Window
affine.ppp

Apply Affine Transformation To Point Pattern
superimpose

Superimpose Several Point Patterns
subset.im

Extract Subset of Image
union.quad

Union of Data and Dummy Points
inside.owin

Test Whether Points Are Inside A Window
shift.owin

Apply Vector Translation To Window
print.ppm

Print a Fitted Point Process Model
Jcross

Multitype J Function (i-to-j)
bdist.pixels

Distance to Boundary of Window
fasp.object

Function Arrays for Spatial Patterns
im.object

Class of Images
mpl

Fit Point Process Model by Maximum Pseudolikelihood
pairwise.family

Pairwise Interaction Process Family
rotate

Rotate
Kcross

Multitype K Function (Cross-type)
StraussHard

The Strauss / Hard Core Point Process Model
bramblecanes

Hutchings' Bramble Canes data
conspire

Plot Together According to a Formula
lansing

Lansing Woods Point Pattern
plot.fasp

Plot a Function Array
data.ppm

Extract Original Data from a Fitted Point Process Model
predict.ppm

Prediction from a Fitted Point Process Model
plot.quad

plot a Spatial Quadrature Scheme
spatstat-internal

Internal spatstat functions
km.rs

Kaplan-Meier and Reduced Sample Estimator using Histograms
PairPiece

The Piecewise Constant Pairwise Interaction Point Process Model
corners

Corners of a rectangle
dummy.ppm

Extract Dummy Points Used to Fit a Point Process Model
eroded.areas

Areas of Morphological Erosions
centroid.owin

Centroid of a window
runifpoint

Generate N Uniform Random Points
Gmulti

Marked Nearest Neighbour Distance Function
print.owin

Print Brief Details of a Spatial Window
print.ppp

Print Brief Details of a Point Pattern Dataset
reduced.sample

Reduced Sample Estimator using Histogram Data
rmh

Simulate point patterns using the Metropolis-Hastings algorithm.
shift

Apply Vector Translation
swedishpines

Swedish Pines Point Pattern