spatstat v1.32-0

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
Ginhom Inhomogeneous Nearest Neighbour Function
Kcross.inhom Inhomogeneous Cross K Function
Extract.fasp Extract Subset of Function Array
areaGain Difference of Disc Areas
Linhom L-function
as.psp Convert Data To Class psp
boxx Multi-Dimensional Box
areaLoss Difference of Disc Areas
Strauss The Strauss Point Process Model
applynbd Apply Function to Every Neighbourhood in a Point Pattern
centroid.owin Centroid of a window
dilation Morphological Dilation
Pairwise Generic Pairwise Interaction model
eval.im Evaluate Expression Involving Pixel Images
Gmulti Marked Nearest Neighbour Distance Function
clip.infline Intersect Infinite Straight Lines with a Window
Extract.layered Extract Subset of a Layered Object
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
DiggleGratton Diggle-Gratton model
murchison Murchison gold deposits
Hybrid Hybrid Interaction Point Process Model
ants Harkness-Isham ants' nests data
Fiksel The Fiksel Interaction
as.box3 Convert Data to Three-Dimensional Box
affine.lpp Apply Geometrical Transformations to Point Pattern on a Linear Network
Finhom Inhomogeneous Empty Space Function
Jcross Multitype J Function (i-to-j)
licence.polygons Restricted Licence Conditions for Polygon Calculations
marks.psp Marks of a Line Segment Pattern
Replace.im Reset Values in Subset of Image
Concom The Connected Component Process Model
bramblecanes Hutchings' Bramble Canes data
BadGey Hybrid Geyer Point Process Model
delaunay.distance Distance on Delaunay Triangulation
is.ppm Test Whether An Object Is A Fitted Point Process Model
OrdThresh Ord's Interaction model
Jdot Multitype J Function (i-to-any)
beachcolours Create Colour Scheme for a Range of Numbers
Extract.linnet Extract Subset of Linear Network
border Border Region of a Window
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
Softcore The Soft Core Point Process Model
Iest Estimate the I-function
logLik.slrm Loglikelihood of Spatial Logistic Regression
complement.owin Take Complement of a Window
bei Tropical rain forest trees
compatible.fasp Test Whether Function Arrays Are Compatible
gorillas Gorilla Nesting Sites
formula.fv Extract or Change the Plot Formula for a Function Value Table
anemones Beadlet Anemones Data
plot.splitppp Plot a List of Point Patterns
Fest Estimate the empty space function F
commonGrid Determine A Common Spatial Domain And Pixel Resolution
Gcom Model Compensator of Nearest Neighbour Function
as.function.fv Convert Function Value Table to Function
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
distmap Distance Map
Extract.msr Extract Subset of Signed or Vector Measure
methods.fii Methods for Fitted Interactions
Extract.psp Extract Subset of Line Segment Pattern
contour.listof Plot a List of Things
distfun Distance Map as a Function
clarkevans.test Clark and Evans Test
Emark Diagnostics for random marking
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
compareFit Residual Diagnostics for Multiple Fitted Models
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
localKinhom Inhomogeneous Neighbourhood Density Function
cut.im Convert Pixel Image from Numeric to Factor
AreaInter The Area Interaction Point Process Model
exactMPLEstrauss Exact Maximum Pseudolikelihood Estimate for Stationary Strauss Process
affine.owin Apply Affine Transformation To Window
by.im Apply Function to Image Broken Down by Factor
runifpointOnLines Generate N Uniform Random Points On Line Segments
plot.colourmap Plot a Colour Map
clusterset Allard-Fraley Estimator of Cluster Feature
deriv.fv Calculate Derivative of Function Values
Ord Generic Ord Interaction model
connected.ppp Connected components of a point pattern
anova.ppm ANOVA for Fitted Point Process Models
MultiHard The Multitype Hard Core Point Process Model
im.object Class of Images
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
is.multitype.ppm Test Whether A Point Process Model is Multitype
affine.psp Apply Affine Transformation To Line Segment Pattern
interp.im Interpolate a Pixel Image
demopat Artificial Data Point Pattern
Kinhom Inhomogeneous K-function
is.owin Test Whether An Object Is A Window
Extract.ppp Extract or Replace Subset of Point Pattern
as.matrix.im Convert Pixel Image to Matrix or Array
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
convexhull Convex Hull
LennardJones The Lennard-Jones Potential
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
colourtools Convert and Compare Colours in Different Formats
Tstat Third order summary statistic
bdist.points Distance to Boundary of Window
as.interact Extract Interaction Structure
plot.hyperframe Plot Entries in a Hyperframe
compatible.fv Test Whether Function Objects Are Compatible
eroded.areas Areas of Morphological Erosions
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
lineardisc Compute Disc of Given Radius in Linear Network
allstats Calculate four standard summary functions of a point pattern.
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
nnwhich Nearest neighbour
cut.ppp Classify Points in a Point Pattern
pairdist Pairwise distances
convolve.im Convolution of Pixel Images
intersect.owin Intersection, Union or Set Subtraction of Two Windows
identify.psp Identify Segments in a Line Segment Pattern
predict.kppm Prediction from a Fitted Cluster Point Process Model
rLGCP Simulate Log-Gaussian Cox Process
gridweights Compute Quadrature Weights Based on Grid Counts
finpines Pine saplings in Finland.
clickjoin Interactively join vertices on a plot
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
harmonise.im Make Pixel Images Compatible
is.marked.ppm Test Whether A Point Process Model is Marked
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
ppx Multidimensional Space-Time Point Pattern
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
affine Apply Affine Transformation
default.expand Default Expansion Rule for Simulation of Model
plot.plotppm Plot a plotppm Object Created by plot.ppm
is.marked Test Whether Marks Are Present
Poisson Poisson Point Process Model
infline Infinite Straight Lines
fitin.ppm Extract the Interaction from a Fitted Point Process Model
nearestsegment Find Line Segment Nearest to Each Point
endpoints.psp Endpoints of Line Segment Pattern
clickppp Interactively Add Points
methods.kppm Methods for Cluster Point Process Models
lut Lookup Tables
humberside Humberside Data on Childhood Leukaemia and Lymphoma
letterR Window in Shape of Letter R
circumradius Circumradius and Diameter of a Linear Network
Lest L-function
envelope.envelope Recompute Envelopes
dclf.progress Progress Plot of Test of Spatial Pattern
erosion Morphological Erosion
ewcdf Weighted Empirical Cumulative Distribution Function
is.convex Test Whether a Window is Convex
model.matrix.slrm Extract Design Matrix from Spatial Logistic Regression Model
dfbetas.ppm Parameter influence measure
markconnect Mark Connection Function
plot.envelope Plot a Simulation Envelope
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
eval.fv Evaluate Expression Involving Functions
affine.im Apply Affine Transformation To Pixel Image
colourmap Colour Lookup Tables
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
ippm Optimise Irregular Trend Parameters in Point Process Model
influence.ppm Influence Measure for Spatial Point Process Model
Ldot.inhom Inhomogeneous Multitype L Dot Function
Lcross.inhom Inhomogeneous Cross Type L Function
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
fv Create a Function Value Table
flu Influenza Virus Proteins
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
convexhull.xy Convex Hull of Points
concatxy Concatenate x,y Coordinate Vectors
methods.funxy Methods for Spatial Functions
methods.pp3 Methods for three-dimensional point patterns
redwood California Redwoods Point Pattern (Ripley's Subset)
distmap.owin Distance Map of Window
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
reduced.sample Reduced Sample Estimator using Histogram Data
msr Signed or Vector-Valued Measure
ppp.object Class of Point Patterns
dilated.areas Areas of Morphological Dilations
closing Morphological Closing
simulate.kppm Simulate a Fitted Cluster Point Process Model
envelope Simulation Envelopes of Summary Function
nnfun Nearest Neighbour Map as a Function
diameter Diameter of an Object
gordon People in Gordon Square
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
pcfcross Multitype pair correlation function (cross-type)
linnet Create a Linear Network
pcf.fv Pair Correlation Function obtained from K Function
smooth.fv Apply Smoothing to Function Values
angles.psp Orientation Angles of Line Segments
Hardcore The Hard Core Point Process Model
nbfires Point Patterns of New Brunswick Forest Fires
raster.x Cartesian Coordinates for a Pixel Raster
parres Partial Residuals for Point Process Model
nnmark Mark of Nearest Neighbour
cells Biological Cells Point Pattern
rknn Theoretical Distribution of Nearest Neighbour Distance
rGaussPoisson Simulate Gauss-Poisson Process
pp3 Three Dimensional Point Pattern
print.ppm Print a Fitted Point Process Model
methods.rhohat Methods for Intensity Functions of Spatial Covariate
methods.lpp Methods for Point Patterns on a Linear Network
hyperframe Hyper Data Frame
pairdist.pp3 Pairwise distances in Three Dimensions
rhohat Smoothing Estimate of Covariate Transformation
methods.units Methods for Units
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
runifpointx Generate N Uniform Random Points in Any Dimensions
plot.psp plot a Spatial Line Segment Pattern
rpoint Generate N Random Points
model.images Compute Images of Constructed Covariates
rlabel Random Re-Labelling of Point Pattern
print.ppp Print Brief Details of a Point Pattern Dataset
lppm Fit Point Process Model to Point Pattern on Linear Network
gridcentres Rectangular grid of points
periodify Make Periodic Copies of a Spatial Pattern
as.ppm Extract Fitted Point Process Model
persp.im Perspective Plot of Pixel Image
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
distcdf Distribution Function of Interpoint Distance
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
rmpoispp Generate Multitype Poisson Point Pattern
simdat Simulated Point Pattern
betacells Beta Ganglion Cells in Cat Retina
density.ppp Kernel Smoothed Intensity of Point Pattern
rpoisppx Generate Poisson Point Pattern in Any Dimensions
simplify.owin Approximate a Polygon by a Simpler Polygon
linim Create Pixel Image on Linear Network
nsegments Number of Line Segments in a Line Segment Pattern
Extract.fv Extract Subset of Function Values
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
is.hybrid Test Whether Object is a Hybrid
npfun Dummy Function Returns Number of Points
pool Pool Data
Extract.tess Extract or Replace Subset of Tessellation
swedishpines Swedish Pines Point Pattern
print.im Print Brief Details of an Image
discpartarea Area of Part of Disc
Gres Residual G Function
plot.pp3 Plot a three-dimensional point pattern
diameter.box3 Geometrical Calculations for Three-Dimensional Box
rMosaicField Mosaic Random Field
bronzefilter Bronze gradient filter data
Jest Estimate the J-function
ponderosa Ponderosa Pine Tree Point Pattern
reach Interaction Distance of a Point Process
valid.ppm Check Whether Point Process Model is Valid
pppdist Distance Between Two Point Patterns
rgbim Create Colour-Valued Pixel Image
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
pairdist.ppp Pairwise distances
is.lpp Test Whether An Object Is A Point Pattern on a Linear Network
with.fv Evaluate an Expression in a Function Table
as.rectangle Window Frame
pcf.ppp Pair Correlation Function of Point Pattern
fitted.ppm Fitted Conditional Intensity for Point Process Model
fasp.object Function Arrays for Spatial Patterns
selfcrossing.psp Crossing Points in a Line Segment Pattern
quadscheme Generate a Quadrature Scheme from a Point Pattern
Jinhom Inhomogeneous J-function
update.rmhcontrol Update Control Parameters of Metropolis-Hastings Algorithm
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
psp Create a Line Segment Pattern
rho2hat Smoothed Relative Density of Pairs of Covariate Values
methods.ppx Methods for Multidimensional Space-Time Point Patterns
nndist Nearest neighbour distances
beginner Print Introduction For Beginners
rescale Convert dataset to another unit of length
Extract.splitppp Extract or Replace Sub-Patterns
envelope.lpp Envelope for Point Patterns on Linear Network
Extract.owin Extract Subset of Window
Kest.fft K-function using FFT
as.matrix.owin Convert Pixel Image to Matrix
rcell Simulate Baddeley-Silverman Cell Process
matchingdist Distance for a Point Pattern Matching
japanesepines Japanese Pines Point Pattern
print.psp Print Brief Details of a Line Segment Pattern Dataset
progressreport Print Progress Reports
rpoisline Generate Poisson Random Line Process
plot.linnet Plot a linear network
rpoislpp Poisson Point Process on a Linear Network
rotate.psp Rotate a Line Segment Pattern
idw Inverse-distance weighted smoothing of observations at irregular points
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
rescale.owin Convert Window to Another Unit of Length
shift.im Apply Vector Translation To Pixel Image
tiles Extract List of Tiles in a Tessellation
compatible Test Whether Objects Are Compatible
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
plot.tess Plot a tessellation
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
pool.envelope Pool Data from Several Envelopes
layered Create List of Plotting Layers
affine.ppp Apply Affine Transformation To Point Pattern
pointsOnLines Place Points Evenly Along Specified Lines
integral.im Integral of a Pixel Image
will.expand Test Expansion Rule
stieltjes Compute Integral of Function Against Cumulative Distribution
F3est Empty Space Function of a Three-Dimensional Point Pattern
rsyst Simulate systematic random point pattern
sumouter Compute Quadratic Forms
pcfinhom Inhomogeneous Pair Correlation Function
is.ppp Test Whether An Object Is A Point Pattern
amacrine Hughes' Amacrine Cell Data
chop.tess Subdivide a Window or Tessellation using a Set of Lines
append.psp Combine Two Line Segment Patterns
model.depends Identify Covariates Involved in each Model Term
Extract.listof Extract or Replace Subset of a List of Things
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
thomas.estK Fit the Thomas Point Process by Minimum Contrast
split.ppp Divide Point Pattern into Sub-patterns
spatstat-deprecated Deprecated spatstat functions
as.mask Pixel Image Approximation of a Window
area.owin Area of a Window
bounding.box.xy Convex Hull of Points
kaplan.meier Kaplan-Meier Estimator using Histogram Data
pool.fasp Pool Data from Several Function Arrays
spruces Spruces Point Pattern
crossdist.lpp Pairwise distances between two point patterns on a linear network
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
bermantest Berman's Tests for Point Process Model
plot.listof Plot a List of Things
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
runifpoint3 Generate N Uniform Random Points in Three Dimensions
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
Kmeasure Reduced Second Moment Measure
round.ppp Apply Numerical Rounding to Spatial Coordinates
as.hyperframe Convert Data to Hyperframe
Kmodel K function of a model
quadrats Divide Region into Quadrats
blur Apply Gaussian Blur to a Pixel Image
setcov Set Covariance of a Window
project.ppm Force Point Process Model to be Valid
discretise Safely Convert Point Pattern Window to Binary Mask
markcorrint Mark Correlation Integral
bdist.tiles Distance to Boundary of Window
Kcross Multitype K Function (Cross-type)
rounding Detect Numerical Rounding
rthin Random Thinning
unnormdensity Weighted kernel smoother
Ldot Multitype L-function (i-to-any)
smooth.msr Smooth a Signed or Vector-Valued Measure
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
sessionLibs Print Names and Version Numbers of Libraries Loaded
Hest Spherical Contact Distribution Function
eem Exponential Energy Marks
as.owin Convert Data To Class owin
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
transect.im Pixel Values Along a Transect
rpoispp Generate Poisson Point Pattern
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
unique.ppp Extract Unique Points from a Spatial Point Pattern
Extract.ppx Extract Subset of Multidimensional Point Pattern
Saturated Saturated Pairwise Interaction model
rThomas Simulate Thomas Process
StraussHard The Strauss / Hard Core Point Process Model
methods.slrm Methods for Spatial Logistic Regression Models
collapse.fv Collapse Several Function Tables into One
quadrat.test Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
rSSI Simulate Simple Sequential Inhibition
summary.ppp Summary of a Point Pattern Dataset
MultiStrauss The Multitype Strauss Point Process Model
scanpp Read Point Pattern From Data File
bind.fv Combine Function Value Tables
midpoints.psp Midpoints of Line Segment Pattern
inforder.family Infinite Order Interaction Family
print.quad Print a Quadrature Scheme
smooth.ppp Spatial smoothing of observations at irregular points
hist.im Histogram of Pixel Values in an Image
fv.object Function Value Table
Jmulti Marked J Function
gpc2owin Convert Polygonal Region into Different Format
Kmulti Marked K-Function
vertices Vertices of a Window
opening Morphological Opening
iplot Point and Click Interface for Displaying Spatial Data
pixellate.psp Convert Line Segment Pattern to Pixel Image
plot.fv Plot Function Values
ppm.object Class of Fitted Point Process Models
perimeter Perimeter Length of Window
as.linim Convert to Pixel Image on Linear Network
shapley Galaxies in the Shapley Supercluster
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
marks Marks of a Point Pattern
scalardilate Apply Scalar Dilation
rcellnumber Generate Random Numbers of Points for Cell Process
simplenet Simple Example of Linear Network
plot.kppm Plot a fitted cluster point process
cbind.hyperframe Combine Hyperframes by Rows or by Columns
logLik.ppm Log Likelihood and AIC for Point Process Model
linearKinhom Inhomogeneous Linear K Function
pixelquad Quadrature Scheme Based on Pixel Grid
hybrid.family Hybrid Interaction Family
localK Neighbourhood density function
as.data.frame.ppp Coerce Point Pattern to a Data Frame
whist Weighted Histogram
npoints Number of Points in a Point Pattern
chorley Chorley-Ribble Cancer Data
rotate.ppp Rotate a Point Pattern
pool.rat Pool Data from Several Ratio Objects
leverage.ppm Leverage Measure for Spatial Point Process Model
rshift.splitppp Randomly Shift a List of Point Patterns
LambertW Lambert's W Function
contour.im Contour plot of pixel image
rstrat Simulate Stratified Random Point Pattern
bw.frac Bandwidth Selection Based on Window Geometry
distmap.psp Distance Map of Line Segment Pattern
crossdist Pairwise distances
crossdist.default Pairwise distances between two different sets of points
predict.lppm Predict Point Process Model on Linear Network
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
delaunay Delaunay Triangulation of Point Pattern
rotate.owin Rotate a Window
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
trim.rectangle Cut margins from rectangle
summary.listof Summary of a List of Things
density.psp Kernel Smoothing of Line Segment Pattern
Kscaled Locally Scaled K-function
hamster Aherne's hamster tumour data
methods.boxx Methods for Multi-Dimensional Box
intensity.lpp Empirical Intensity of Point Pattern on Linear Network
localpcf Local pair correlation function
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
linearK Linear K Function
volume Volume of an Object
edges2vees List Dihedral Triples in a Graph
Kdot Multitype K Function (i-to-any)
unmark Remove Marks
chicago Chicago Street Crime Data
methods.linnet Methods for Linear Networks
Kcom Model Compensator of K Function
clickpoly Interactively Define a Polygon
owin Create a Window
lpp Create Point Pattern on Linear Network
lengths.psp Lengths of Line Segments
model.matrix.ppm Extract Design Matrix from Point Process Model
levelset Level Set of a Pixel Image
plot.fasp Plot a Function Array
crossdist.psp Pairwise distances between two different line segment patterns
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
slrm Spatial Logistic Regression
Extract.quad Subset of Quadrature Scheme
eval.fasp Evaluate Expression Involving Function Arrays
kppm Fit Cluster or Cox Point Process Model
rPoissonCluster Simulate Poisson Cluster Process
shift.psp Apply Vector Translation To Line Segment Pattern
as.data.frame.im Convert Pixel Image to Data Frame
box3 Three-Dimensional Box
pcf.fasp Pair Correlation Function obtained from array of K functions
simulate.ppm Simulate a Fitted Gibbs Point Process Model
mincontrast Method of Minimum Contrast
intensity Intensity of a Dataset or a Model
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
as.tess Convert Data To Tessellation
longleaf Longleaf Pines Point Pattern
plot.influence.ppm Plot Influence Measure
crossing.psp Crossing Points of Two Line Segment Patterns
shift Apply Vector Translation
copper Berman-Huntington points and lines data
sidelengths.owin Side Lengths of Enclosing Rectangle of a Window
spatstat-package The Spatstat Package
methods.lppm Methods for Fitted Point Process Models on a Linear Network
intensity.ppm Intensity of Fitted Point Process Model
update.kppm Update a Fitted Cluster Point Process Model
rHardcore Perfect Simulation of the Hardcore Process
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
timed Record the Computation Time
Lcross Multitype L-function (cross-type)
lurking Lurking variable plot
runifpoint Generate N Uniform Random Points
Gest Nearest Neighbour Distance Function G
plot.slrm Plot a Fitted Spatial Logistic Regression
crossdist.ppp Pairwise distances between two different point patterns
flipxy Exchange X and Y Coordinates
pairwise.family Pairwise Interaction Process Family
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
paracou Kimboto trees at Paracou, French Guiana
nnwhich.ppx Nearest Neighbours in Any Dimensions
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
harmonic Basis for Harmonic Functions
triplet.family Triplet Interaction Family
mucosa Cells in Gastric Mucosa
profilepl Profile Maximum Pseudolikelihood
which.max.im Identify Pixelwise Maximum of Several Pixel Images
Triplets The Triplet Point Process Model
plot.msr Plot a Signed or Vector-Valued Measure
vcov.slrm Variance-Covariance Matrix for a Fitted Spatial Logistic Regression
tess Create a Tessellation
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
is.multitype Test whether Object is Multitype
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
split.im Divide Image Into Sub-images
latest.news Print News About Latest Version of Package
Kdot.inhom Inhomogeneous Multitype K Dot Function
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
owin.object Class owin
methods.layered Methods for Layered Objects
is.stationary Recognise Stationary and Poisson Point Process Models
clmfires Castilla-La Mancha Forest Fires
markvario Mark Variogram
is.subset.owin Determine Whether One Window is Contained In Another
pairs.im Scatterplot Matrix for Pixel Images
nearest.raster.point Find Pixel Nearest to a Given Point
rmhexpand Specify Simulation Window or Expansion Rule
nnwhich.pp3 Nearest neighbours in three dimensions
identify.ppp Identify Points in a Point Pattern
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
pairdist.psp Pairwise distances between line segments
pixellate.owin Convert Window to Pixel Image
as.fv Convert Data To Class fv
quad.object Class of Quadrature Schemes
Kest K-function
data.ppm Extract Original Data from a Fitted Point Process Model
quadscheme.logi Generate a Logistic Regression Quadrature Scheme from a Point Pattern
rescale.psp Convert Line Segment Pattern to Another Unit of Length
markcorr Mark Correlation Function
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
pixellate Convert Spatial Object to Pixel Image
imcov Spatial Covariance of a Pixel Image
nndist.ppx Nearest Neighbour Distances in Any Dimensions
pcf Pair Correlation Function
diameter.owin Diameter of a Window
plot.im Plot a Pixel Image
coef.ppm Coefficients of Fitted Point Process Model
Geyer Geyer's Saturation Point Process Model
split.ppx Divide Multidimensional Point Pattern into Sub-patterns
rescue.rectangle Convert Window Back To Rectangle
dirichlet Dirichlet Tessellation of Point Pattern
plot.quad plot a Spatial Quadrature Scheme
rmpoint Generate N Random Multitype Points
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
ppm Fit Point Process Model to Data
pppmatching Create a Point Matching
rjitter Random Perturbation of a Point Pattern
rNeymanScott Simulate Neyman-Scott Process
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
hyytiala Scots pines and other trees at Hyytiala
residualspaper Data and Code From JRSS Discussion Paper on Residuals
lansing Lansing Woods Point Pattern
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
model.frame.ppm Extract the Variables in a Point Process Model
ripras Estimate window from points alone
summary.splitppp Summary of a Split Point Pattern
quadrat.test.splitppp Dispersion Test of CSR for Split Point Pattern Based on Quadrat Counts
quantile.im Sample Quantiles of Pixel Image
connected Connected components
clarkevans Clark and Evans Aggregation Index
deltametric Delta Metric
plot.ppp plot a Spatial Point Pattern
runiflpp Uniform Random Points on a Linear Network
plot.owin Plot a Spatial Window
project2segment Move Point To Nearest Line
square Square Window
dummify Convert Data to Numeric Values by Constructing Dummy Variables
nncross.pp3 Nearest Neighbours Between Two Patterns in 3D
as.ppp Convert Data To Class ppp
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
ppp Create a Point Pattern
nndist.pp3 Nearest neighbour distances in three dimensions
scan.test Spatial Scan Test
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
spatstat-internal Internal spatstat functions
pairdist.lpp Pairwise shortest-path distances between points on a linear network
disc Circular Window
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
methods.box3 Methods for Three-Dimensional Box
nnmap K-th Nearest Point Map
Extract.lpp Extract Subset of Point Pattern on Linear Network
is.marked.ppp Test Whether A Point Pattern is Marked
rStrauss Perfect Simulation of the Strauss Process
rat Ratio object
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
Gfox Foxall's Distance Functions
summary.im Summarizing a Pixel Image
psp.object Class of Line Segment Patterns
quadratresample Resample a Point Pattern by Resampling Quadrats
tweak.colourmap Change Colour Values in a Colour Map
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
compatible.im Test Whether Pixel Images Are Compatible
pairsat.family Saturated Pairwise Interaction Point Process Family
is.im Test Whether An Object Is A Pixel Image
update.ppm Update a Fitted Point Process Model
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
Kres Residual K Function
distmap.ppp Distance Map of Point Pattern
kstest.ppm Kolmogorov-Smirnov Test for Point Pattern or Point Process Model
plot.layered Layered Plot
formula.ppm Model Formulae for Gibbs Point Process Models
heather Diggle's Heather Data
Extract.im Extract Subset of Image
spokes Spokes pattern of dummy points
ord.family Ord Interaction Process Family
intersect.tess Intersection of Two Tessellations
dclf.test Diggle-Cressie-Loosmore-Ford and Maximum Absolute Deviation Tests
runifdisc Generate N Uniform Random Points in a Disc
nnclean Nearest Neighbour Clutter Removal
summary.ppm Summarizing a Fitted Point Process Model
shift.ppp Apply Vector Translation To Point Pattern
zapsmall.im Rounding of Pixel Values
addvar Added Variable Plot for Point Process Model
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
nndist.psp Nearest neighbour distances between line segments
rshift.ppp Randomly Shift a Point Pattern
linearpcf Linear Pair Correlation Function
affine.linnet Apply Geometrical Transformations to a Linear Network
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
nncross Nearest Neighbours Between Two Patterns
im Create a Pixel Image Object
is.rectangle Determine Type of Window
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
pcfdot Multitype pair correlation function (i-to-any)
waka Trees in Waka national park
Kmulti.inhom Inhomogeneous Marked K-Function
bounding.box Bounding Box of a Window or Point Pattern
fryplot Fry Plot of Point Pattern
pppmatching.object Class of Point Matchings
multiplicity.ppp Count Multiplicity of Duplicate Points
as.im Convert to Pixel Image
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
predict.ppm Prediction from a Fitted Point Process Model
tile.areas Compute Areas of Tiles in a Tessellation
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
K3est K-function of a Three-Dimensional Point Pattern
miplot Morishita Index Plot
pixellate.ppp Convert Point Pattern to Pixel Image
print.owin Print Brief Details of a Spatial Window
rMaternI Simulate Matern Model I
varblock Estimate Variance of Summary Statistic by Subdivision
bdist.pixels Distance to Boundary of Window
corners Corners of a rectangle
as.polygonal Convert a Window to a Polygonal Window
funxy Spatial Function Class
rescale.ppp Convert Point Pattern to Another Unit of Length
plot.linim Plot Pixel Image on Linear Network
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
plot.leverage.ppm Plot Leverage Function
quadratcount Quadrat counting for a point pattern
scaletointerval Rescale Data to Lie Between Specified Limits
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
shift.owin Apply Vector Translation To Window
default.dummy Generate a Default Pattern of Dummy Points
edges2triangles List Triangles in a Graph
rotate Rotate
summary.owin Summary of a Spatial Window
rescale.im Convert Pixel Image to Another Unit of Length
rmh.ppm Simulate from a Fitted Point Process Model
suffstat Sufficient Statistic of Point Process Model
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
summary.psp Summary of a Line Segment Pattern Dataset
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
inside.owin Test Whether Points Are Inside A Window
superimpose Superimpose Several Geometric Patterns
rMosaicSet Mosaic Random Set
summary.quad Summarizing a Quadrature Scheme
layerplotargs Extract or Replace the Plot Arguments of a Layered Object
interp.colourmap Interpolate smoothly between specified colours
pairdist.default Pairwise distances
rpoislinetess Poisson Line Tessellation
lohboot Bootstrap Confidence Bands for Summary Function
expand.owin Apply Expansion Rule
rMatClust Simulate Matern Cluster Process
incircle Find Largest Circle Inside Window
rotate.im Rotate a Pixel Image
ganglia Beta Ganglion Cells in Cat Retina, Old Version
is.multitype.ppp Test Whether A Point Pattern is Multitype
spatstat.options Internal Options in Spatstat Package
plot.ppm plot a Fitted Point Process Model
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
rlinegrid Generate grid of parallel lines with random displacement
residuals.ppm Residuals for Fitted Point Process Model
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
rshift.psp Randomly Shift a Line Segment Pattern
urkiola Urkiola Woods Point Pattern
sharpen Data Sharpening of Point Pattern
rshift Random Shift
pool.quadrattest Pool Several Quadrat Tests
redwoodfull California Redwoods Point Pattern (Entire Dataset)
plot.bermantest Plot Result of Berman Test
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
is.empty Test Whether An Object Is Empty
nztrees New Zealand Trees Point Pattern
pairdist.ppx Pairwise Distances in Any Dimensions
unitname Name for Unit of Length
union.quad Union of Data and Dummy Points
rMaternII Simulate Matern Model II
intensity.ppp Empirical Intensity of Point Pattern
istat Point and Click Interface for Exploratory Analysis of Point Pattern
reflect Reflect In Origin
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Details

Date 2013-08-13
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
LazyLoad true
ByteCompile true
Packaged 2013-08-13 08:23:55 UTC; adrian
NeedsCompilation yes
Repository CRAN
Date/Publication 2013-08-13 12:42:15

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