spatstat v1.33-0

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
Kmodel K function of a model
Iest Estimate the I-function
Fest Estimate the empty space function F
AreaInter The Area Interaction Point Process Model
by.im Apply Function to Image Broken Down by Factor
Jmulti Marked J Function
connected Connected components
Lcross Multitype L-function (cross-type)
Extract.psp Extract Subset of Line Segment Pattern
Finhom Inhomogeneous Empty Space Function
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
bdist.points Distance to Boundary of Window
cells Biological Cells Point Pattern
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
density.ppp Kernel Smoothed Intensity of Point Pattern
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
Extract.ppx Extract Subset of Multidimensional Point Pattern
betacells Beta Ganglion Cells in Cat Retina
as.polygonal Convert a Window to a Polygonal Window
Linhom L-function
Jcross Multitype J Function (i-to-j)
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
as.ppp Convert Data To Class ppp
clickjoin Interactively join vertices on a plot
beachcolours Create Colour Scheme for a Range of Numbers
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
colourmap Colour Lookup Tables
edges2triangles List Triangles in a Graph
intersect.tess Intersection of Two Tessellations
deriv.fv Calculate Derivative of Function Values
clmfires Castilla-La Mancha Forest Fires
gridcentres Rectangular grid of points
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
compatible.fv Test Whether Function Objects Are Compatible
areaLoss Difference of Disc Areas
dirichlet Dirichlet Tessellation of Point Pattern
compareFit Residual Diagnostics for Multiple Fitted Models
distmap Distance Map
density.psp Kernel Smoothing of Line Segment Pattern
fasp.object Function Arrays for Spatial Patterns
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
letterR Window in Shape of Letter R
fitin.ppm Extract the Interaction from a Fitted Point Process Model
nndist.psp Nearest neighbour distances between line segments
Fiksel The Fiksel Interaction
as.linim Convert to Pixel Image on Linear Network
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
Smooth Spatial smoothing of data
bermantest Berman's Tests for Point Process Model
as.rectangle Window Frame
chop.tess Subdivide a Window or Tessellation using a Set of Lines
Tstat Third order summary statistic
default.expand Default Expansion Rule for Simulation of Model
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
StraussHard The Strauss / Hard Core Point Process Model
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
cut.ppp Classify Points in a Point Pattern
border Border Region of a Window
colourtools Convert and Compare Colours in Different Formats
blur Apply Gaussian Blur to a Pixel Image
dilation Morphological Dilation
plot.leverage.ppm Plot Leverage Function
hyytiala Scots pines and other trees at Hyytiala
allstats Calculate four standard summary functions of a point pattern.
affine.lpp Apply Geometrical Transformations to Point Pattern on a Linear Network
harmonise.im Make Pixel Images Compatible
Geyer Geyer's Saturation Point Process Model
influence.ppm Influence Measure for Spatial Point Process Model
gridweights Compute Quadrature Weights Based on Grid Counts
methods.lpp Methods for Point Patterns on a Linear Network
intersect.owin Intersection, Union or Set Subtraction of Two Windows
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
infline Infinite Straight Lines
is.hybrid Test Whether Object is a Hybrid
Ldot Multitype L-function (i-to-any)
default.dummy Generate a Default Pattern of Dummy Points
Kres Residual K Function
as.data.frame.im Convert Pixel Image to Data Frame
Extract.fasp Extract Subset of Function Array
plot.envelope Plot a Simulation Envelope
diameter.owin Diameter of a Window
kstest.ppm Kolmogorov-Smirnov Test for Point Pattern or Point Process Model
data.ppm Extract Original Data from a Fitted Point Process Model
bw.ppl Likelihood Cross Validation Bandwidth Selection for Kernel Density
Kmulti.inhom Inhomogeneous Marked K-Function
Gres Residual G Function
is.multitype.ppp Test Whether A Point Pattern is Multitype
demopat Artificial Data Point Pattern
clickpoly Interactively Define a Polygon
linearKinhom Inhomogeneous Linear K Function
intensity.lpp Empirical Intensity of Point Pattern on Linear Network
area.owin Area of a Window
Lcross.inhom Inhomogeneous Cross Type L Function
Kmeasure Reduced Second Moment Measure
diameter.box3 Geometrical Calculations for Three-Dimensional Box
cut.im Convert Pixel Image from Numeric to Factor
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
is.marked.ppp Test Whether A Point Pattern is Marked
ippm Optimise Irregular Trend Parameters in Point Process Model
pppmatching Create a Point Matching
crossdist.default Pairwise distances between two different sets of points
areaGain Difference of Disc Areas
flu Influenza Virus Proteins
eval.fasp Evaluate Expression Involving Function Arrays
Pairwise Generic Pairwise Interaction model
rescale.im Convert Pixel Image to Another Unit of Length
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
localpcf Local pair correlation function
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
compatible Test Whether Objects Are Compatible
distmap.ppp Distance Map of Point Pattern
BadGey Hybrid Geyer Point Process Model
heather Diggle's Heather Data
Kcross.inhom Inhomogeneous Cross K Function
logLik.ppm Log Likelihood and AIC for Point Process Model
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
kppm Fit Cluster or Cox Point Process Model
Emark Diagnostics for random marking
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
collapse.fv Collapse Several Function Tables into One
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
inside.owin Test Whether Points Are Inside A Window
pcfinhom Inhomogeneous Pair Correlation Function
plot.influence.ppm Plot Influence Measure
print.owin Print Brief Details of a Spatial Window
connected.ppp Connected components of a point pattern
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
methods.slrm Methods for Spatial Logistic Regression Models
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
dclf.test Diggle-Cressie-Loosmore-Ford and Maximum Absolute Deviation Tests
centroid.owin Centroid of a window
exactMPLEstrauss Exact Maximum Pseudolikelihood Estimate for Stationary Strauss Process
commonGrid Determine A Common Spatial Domain And Pixel Resolution
edges2vees List Dihedral Triples in a Graph
logLik.slrm Loglikelihood of Spatial Logistic Regression
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
rjitter Random Perturbation of a Point Pattern
cbind.hyperframe Combine Hyperframes by Rows or by Columns
lut Lookup Tables
multiplicity.ppp Count Multiplicity of Duplicate Points
Ldot.inhom Inhomogeneous Multitype L Dot Function
longleaf Longleaf Pines Point Pattern
lppm Fit Point Process Model to Point Pattern on Linear Network
as.fv Convert Data To Class fv
disc Circular Window
Jest Estimate the J-function
addvar Added Variable Plot for Point Process Model
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
Extract.layered Extract Subset of a Layered Object
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
plot.colourmap Plot a Colour Map
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
bdist.tiles Distance to Boundary of Window
localKinhom Inhomogeneous Neighbourhood Density Function
rescale.ppp Convert Point Pattern to Another Unit of Length
iplot Point and Click Interface for Displaying Spatial Data
affine.psp Apply Affine Transformation To Line Segment Pattern
methods.kppm Methods for Cluster Point Process Models
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
complement.owin Take Complement of a Window
pairsat.family Saturated Pairwise Interaction Point Process Family
rPoissonCluster Simulate Poisson Cluster Process
envelope Simulation Envelopes of Summary Function
Poisson Poisson Point Process Model
predict.kppm Prediction from a Fitted Cluster Point Process Model
localK Neighbourhood density function
F3est Empty Space Function of a Three-Dimensional Point Pattern
distmap.psp Distance Map of Line Segment Pattern
summary.quad Summarizing a Quadrature Scheme
pixellate.psp Convert Line Segment Pattern to Pixel Image
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
affine.im Apply Affine Transformation To Pixel Image
fv.object Function Value Table
delaunay.distance Distance on Delaunay Triangulation
clarkevans Clark and Evans Aggregation Index
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
is.marked Test Whether Marks Are Present
nndist.pp3 Nearest neighbour distances in three dimensions
plot.plotppm Plot a plotppm Object Created by plot.ppm
rescale.psp Convert Line Segment Pattern to Another Unit of Length
parres Partial Residuals for Point Process Model
methods.layered Methods for Layered Objects
spatstat-internal Internal spatstat functions
methods.lppm Methods for Fitted Point Process Models on a Linear Network
identify.psp Identify Segments in a Line Segment Pattern
nncross.pp3 Nearest Neighbours Between Two Patterns in 3D
affine.linnet Apply Geometrical Transformations to a Linear Network
crossdist Pairwise distances
envelope.envelope Recompute Envelopes
chicago Chicago Street Crime Data
rHardcore Perfect Simulation of the Hardcore Process
affine.ppp Apply Affine Transformation To Point Pattern
crossing.psp Crossing Points of Two Line Segment Patterns
dummify Convert Data to Numeric Values by Constructing Dummy Variables
as.interact Extract Interaction Structure
Saturated Saturated Pairwise Interaction model
pairs.im Scatterplot Matrix for Pixel Images
rMaternI Simulate Matern Model I
tess Create a Tessellation
midpoints.psp Midpoints of Line Segment Pattern
nnfun Nearest Neighbour Map as a Function
shift.owin Apply Vector Translation To Window
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
lurking Lurking variable plot
Concom The Connected Component Process Model
superimpose Superimpose Several Geometric Patterns
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
dfbetas.ppm Parameter influence measure
pixellate.owin Convert Window to Pixel Image
gorillas Gorilla Nesting Sites
hybrid.family Hybrid Interaction Family
quantile.im Sample Quantiles of Pixel Image
methods.rhohat Methods for Intensity Functions of Spatial Covariate
nearestsegment Find Line Segment Nearest to Each Point
hamster Aherne's hamster tumour data
plot.fasp Plot a Function Array
union.quad Union of Data and Dummy Points
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
edge.Trans Translation Edge Correction
plot.im Plot a Pixel Image
Kest.fft K-function using FFT
methods.pp3 Methods for three-dimensional point patterns
as.psp Convert Data To Class psp
convolve.im Convolution of Pixel Images
convexhull.xy Convex Hull of Points
as.ppm Extract Fitted Point Process Model
pointsOnLines Place Points Evenly Along Specified Lines
inforder.family Infinite Order Interaction Family
volume Volume of an Object
spatstat.options Internal Options in Spatstat Package
pcf.fasp Pair Correlation Function obtained from array of K functions
Triplets The Triplet Point Process Model
eem Exponential Energy Marks
plot.owin Plot a Spatial Window
suffstat Sufficient Statistic of Point Process Model
print.im Print Brief Details of an Image
npoints Number of Points in a Point Pattern
istat Point and Click Interface for Exploratory Analysis of Point Pattern
which.max.im Identify Pixelwise Maximum of Several Pixel Images
rsyst Simulate systematic random point pattern
Kdot.inhom Inhomogeneous Multitype K Dot Function
simulate.kppm Simulate a Fitted Cluster Point Process Model
concatxy Concatenate x,y Coordinate Vectors
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
urkiola Urkiola Woods Point Pattern
discpartarea Area of Part of Disc
chorley Chorley-Ribble Cancer Data
bounding.box.xy Convex Hull of Points
Extract.owin Extract Subset of Window
rotate.im Rotate a Pixel Image
pairdist.ppx Pairwise Distances in Any Dimensions
rescale.owin Convert Window to Another Unit of Length
crossdist.lpp Pairwise distances between two point patterns on a linear network
rpoispp Generate Poisson Point Pattern
Strauss The Strauss Point Process Model
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
plot.ppp plot a Spatial Point Pattern
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
pool.rat Pool Data from Several Ratio Objects
expand.owin Apply Expansion Rule
plot.bermantest Plot Result of Berman Test
sharpen Data Sharpening of Point Pattern
plot.linnet Plot a linear network
ppp.object Class of Point Patterns
rhohat Smoothing Estimate of Covariate Transformation
rgbim Create Colour-Valued Pixel Image
rNeymanScott Simulate Neyman-Scott Process
bei Tropical rain forest trees
Extract.ppp Extract or Replace Subset of Point Pattern
affine Apply Affine Transformation
diameter Diameter of an Object
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
markcorr Mark Correlation Function
rescale Convert dataset to another unit of length
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
compatible.im Test Whether Pixel Images Are Compatible
ewcdf Weighted Empirical Cumulative Distribution Function
zapsmall.im Rounding of Pixel Values
Extract.lpp Extract Subset of Point Pattern on Linear Network
MultiHard The Multitype Hard Core Point Process Model
predict.lppm Predict Point Process Model on Linear Network
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
timed Record the Computation Time
plot.kppm Plot a fitted cluster point process
pcf.ppp Pair Correlation Function of Point Pattern
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
fv Create a Function Value Table
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
trim.rectangle Cut margins from rectangle
plot.fv Plot Function Values
model.images Compute Images of Constructed Covariates
pcfcross Multitype pair correlation function (cross-type)
Kdot Multitype K Function (i-to-any)
methods.fii Methods for Fitted Interactions
plot.pp3 Plot a three-dimensional point pattern
model.depends Identify Covariates Involved in each Model Term
Ginhom Inhomogeneous Nearest Neighbour Function
Kest K-function
scan.test Spatial Scan Test
scaletointerval Rescale Data to Lie Between Specified Limits
circumradius Circumradius and Diameter of a Linear Network
persp.im Perspective Plot of Pixel Image
vcov.slrm Variance-Covariance Matrix for a Fitted Spatial Logistic Regression
residualspaper Data and Code From JRSS Discussion Paper on Residuals
rLGCP Simulate Log-Gaussian Cox Process
scanpp Read Point Pattern From Data File
closing Morphological Closing
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
OrdThresh Ord's Interaction model
intensity Intensity of a Dataset or a Model
split.ppp Divide Point Pattern into Sub-patterns
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
tile.areas Compute Areas of Tiles in a Tessellation
methods.linnet Methods for Linear Networks
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
intensity.ppp Empirical Intensity of Point Pattern
nnwhich.pp3 Nearest neighbours in three dimensions
lansing Lansing Woods Point Pattern
runiflpp Uniform Random Points on a Linear Network
discretise Safely Convert Point Pattern Window to Binary Mask
dilated.areas Areas of Morphological Dilations
MultiStrauss The Multitype Strauss Point Process Model
update.ppm Update a Fitted Point Process Model
miplot Morishita Index Plot
is.ppp Test Whether An Object Is A Point Pattern
formula.fv Extract or Change the Plot Formula for a Function Value Table
as.data.frame.ppp Coerce Point Pattern to a Data Frame
summary.ppm Summarizing a Fitted Point Process Model
gpc2owin Convert Polygonal Region into Different Format
corners Corners of a rectangle
ganglia Beta Ganglion Cells in Cat Retina, Old Version
rpoint Generate N Random Points
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
selfcrossing.psp Crossing Points in a Line Segment Pattern
nbfires Point Patterns of New Brunswick Forest Fires
redwoodfull California Redwoods Point Pattern (Entire Dataset)
rpoislinetess Poisson Line Tessellation
is.ppm Test Whether An Object Is A Fitted Point Process Model
Extract.listof Extract or Replace Subset of a List of Things
linearpcf Linear Pair Correlation Function
runifdisc Generate N Uniform Random Points in a Disc
clarkevans.test Clark and Evans Test
Extract.quad Subset of Quadrature Scheme
is.convex Test Whether a Window is Convex
print.quad Print a Quadrature Scheme
rat Ratio object
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
rshift Random Shift
as.tess Convert Data To Tessellation
rcellnumber Generate Random Numbers of Points for Cell Process
as.matrix.im Convert Pixel Image to Matrix or Array
Extract.msr Extract Subset of Signed or Vector Measure
nnwhich.ppx Nearest Neighbours in Any Dimensions
smooth.ppp Spatial smoothing of observations at irregular points
rmpoispp Generate Multitype Poisson Point Pattern
ponderosa Ponderosa Pine Tree Point Pattern
print.ppm Print a Fitted Point Process Model
npfun Dummy Function Returns Number of Points
valid.ppm Check Whether Point Process Model is Valid
nearest.raster.point Find Pixel Nearest to a Given Point
simplify.owin Approximate a Polygon by a Simpler Polygon
tweak.colourmap Change Colour Values in a Colour Map
plot.linim Plot Pixel Image on Linear Network
envelope.lpp Envelope for Point Patterns on Linear Network
transect.im Pixel Values Along a Transect
opening Morphological Opening
latest.news Print News About Latest Version of Package
is.lpp Test Whether An Object Is A Point Pattern on a Linear Network
shift.ppp Apply Vector Translation To Point Pattern
vertices Vertices of a Window
bronzefilter Bronze gradient filter data
append.psp Combine Two Line Segment Patterns
distcdf Distribution Function of Interpoint Distance
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
smooth.msr Smooth a Signed or Vector-Valued Measure
methods.boxx Methods for Multi-Dimensional Box
sessionLibs Print Names and Version Numbers of Libraries Loaded
Replace.im Reset Values in Subset of Image
applynbd Apply Function to Every Neighbourhood in a Point Pattern
summary.psp Summary of a Line Segment Pattern Dataset
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
identify.ppp Identify Points in a Point Pattern
pcfdot Multitype pair correlation function (i-to-any)
mucosa Cells in Gastric Mucosa
shift.psp Apply Vector Translation To Line Segment Pattern
spruces Spruces Point Pattern
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
Jinhom Inhomogeneous J-function
delaunay Delaunay Triangulation of Point Pattern
plot.msr Plot a Signed or Vector-Valued Measure
bdist.pixels Distance to Boundary of Window
split.im Divide Image Into Sub-images
eroded.areas Areas of Morphological Erosions
finpines Pine saplings in Finland.
reduced.sample Reduced Sample Estimator using Histogram Data
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
is.im Test Whether An Object Is A Pixel Image
owin Create a Window
mincontrast Method of Minimum Contrast
ppm Fit Point Process Model to Data
is.subset.owin Determine Whether One Window is Contained In Another
setcov Set Covariance of a Window
matchingdist Distance for a Point Pattern Matching
thomas.estK Fit the Thomas Point Process by Minimum Contrast
methods.box3 Methods for Three-Dimensional Box
spatstat-deprecated Deprecated spatstat functions
psp.object Class of Line Segment Patterns
round.ppp Apply Numerical Rounding to Spatial Coordinates
nztrees New Zealand Trees Point Pattern
quadrat.test.splitppp Dispersion Test of CSR for Split Point Pattern Based on Quadrat Counts
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
edge.Ripley Ripley's Isotropic Edge Correction
pixelquad Quadrature Scheme Based on Pixel Grid
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
unitname Name for Unit of Length
lpp Create Point Pattern on Linear Network
Extract.fv Extract Subset of Function Values
paracou Kimboto trees at Paracou, French Guiana
bw.frac Bandwidth Selection Based on Window Geometry
as.hyperframe Convert Data to Hyperframe
dclf.progress Progress Plot of Test of Spatial Pattern
bounding.box Bounding Box of a Window or Point Pattern
model.matrix.slrm Extract Design Matrix from Spatial Logistic Regression Model
rpoislpp Poisson Point Process on a Linear Network
rmpoint Generate N Random Multitype Points
Hybrid Hybrid Interaction Point Process Model
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
plot.splitppp Plot a List of Point Patterns
sumouter Compute Quadratic Forms
as.function.fv Convert Function Value Table to Function
funxy Spatial Function Class
humberside Humberside Data on Childhood Leukaemia and Lymphoma
marks.psp Marks of a Line Segment Pattern
pcf Pair Correlation Function
layerplotargs Extract or Replace the Plot Arguments of a Layered Object
periodify Make Periodic Copies of a Spatial Pattern
markconnect Mark Connection Function
ppx Multidimensional Space-Time Point Pattern
nnwhich Nearest neighbour
nncross Nearest Neighbours Between Two Patterns
is.rectangle Determine Type of Window
rMaternII Simulate Matern Model II
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
Lest L-function
distfun Distance Map as a Function
pool Pool Data
pppdist Distance Between Two Point Patterns
runifpoint Generate N Uniform Random Points
waka Trees in Waka national park
quadscheme.logi Generate a Logistic Regression Quadrature Scheme from a Point Pattern
layered Create List of Plotting Layers
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
ord.family Ord Interaction Process Family
plot.ppm plot a Fitted Point Process Model
imcov Spatial Covariance of a Pixel Image
deltametric Delta Metric
incircle Find Largest Circle Inside Window
bind.fv Combine Function Value Tables
lineardisc Compute Disc of Given Radius in Linear Network
simdat Simulated Point Pattern
shift Apply Vector Translation
simplenet Simple Example of Linear Network
update.kppm Update a Fitted Cluster Point Process Model
nndist Nearest neighbour distances
pcf.fv Pair Correlation Function obtained from K Function
rlabel Random Re-Labelling of Point Pattern
im.object Class of Images
contour.im Contour plot of pixel image
progressreport Print Progress Reports
as.box3 Convert Data to Three-Dimensional Box
formula.ppm Model Formulae for Gibbs Point Process Models
methods.ppx Methods for Multidimensional Space-Time Point Patterns
lengths.psp Lengths of Line Segments
lohboot Bootstrap Confidence Bands for Summary Function
integral.im Integral of a Pixel Image
Gest Nearest Neighbour Distance Function G
quadratcount Quadrat counting for a point pattern
print.ppp Print Brief Details of a Point Pattern Dataset
eval.im Evaluate Expression Involving Pixel Images
rThomas Simulate Thomas Process
psp Create a Line Segment Pattern
kaplan.meier Kaplan-Meier Estimator using Histogram Data
fitted.ppm Fitted Conditional Intensity for Point Process Model
nnclean Nearest Neighbour Clutter Removal
gordon People in Gordon Square
beginner Print Introduction For Beginners
box3 Three-Dimensional Box
unmark Remove Marks
summary.owin Summary of a Spatial Window
is.multitype Test whether Object is Multitype
varblock Estimate Variance of Summary Statistic by Subdivision
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
sidelengths.owin Side Lengths of Enclosing Rectangle of a Window
linearK Linear K Function
K3est K-function of a Three-Dimensional Point Pattern
rMatClust Simulate Matern Cluster Process
rGaussPoisson Simulate Gauss-Poisson Process
crossdist.ppp Pairwise distances between two different point patterns
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
LennardJones The Lennard-Jones Potential
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
plot.layered Layered Plot
project.ppm Force Point Process Model to be Valid
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
Jdot Multitype J Function (i-to-any)
as.matrix.owin Convert Pixel Image to Matrix
ripras Estimate window from points alone
rho2hat Smoothed Relative Density of Pairs of Covariate Values
pool.envelope Pool Data from Several Envelopes
anova.ppm ANOVA for Fitted Point Process Models
pixellate.ppp Convert Point Pattern to Pixel Image
shift.im Apply Vector Translation To Pixel Image
model.frame.ppm Extract the Variables in a Point Process Model
is.stationary Recognise Stationary and Poisson Point Process Models
ppm.object Class of Fitted Point Process Models
rSSI Simulate Simple Sequential Inhibition
summary.ppp Summary of a Point Pattern Dataset
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
redwood California Redwoods Point Pattern (Ripley's Subset)
with.fv Evaluate an Expression in a Function Table
Softcore The Soft Core Point Process Model
rshift.psp Randomly Shift a Line Segment Pattern
is.marked.ppm Test Whether A Point Process Model is Marked
quadrats Divide Region into Quadrats
bramblecanes Hutchings' Bramble Canes data
rotate.psp Rotate a Line Segment Pattern
distmap.owin Distance Map of Window
pairwise.family Pairwise Interaction Process Family
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
rpoisline Generate Poisson Random Line Process
rescue.rectangle Convert Window Back To Rectangle
quadscheme Generate a Quadrature Scheme from a Point Pattern
Gfox Foxall's Distance Functions
marks Marks of a Point Pattern
levelset Level Set of a Pixel Image
pairdist.ppp Pairwise distances
Kcross Multitype K Function (Cross-type)
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
tiles Extract List of Tiles in a Tessellation
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
update.rmhcontrol Update Control Parameters of Metropolis-Hastings Algorithm
owin.object Class owin
angles.psp Orientation Angles of Line Segments
reflect Reflect In Origin
plot.quad plot a Spatial Quadrature Scheme
print.psp Print Brief Details of a Line Segment Pattern Dataset
pairdist.default Pairwise distances
linnet Create a Linear Network
unnormdensity Weighted kernel smoother
markcorrint Mark Correlation Integral
Gcom Model Compensator of Nearest Neighbour Function
profilepl Profile Maximum Pseudolikelihood
swedishpines Swedish Pines Point Pattern
methods.units Methods for Units
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
fryplot Fry Plot of Point Pattern
convexhull Convex Hull
rpoisppx Generate Poisson Point Pattern in Any Dimensions
rknn Theoretical Distribution of Nearest Neighbour Distance
runifpoint3 Generate N Uniform Random Points in Three Dimensions
msr Signed or Vector-Valued Measure
summary.splitppp Summary of a Split Point Pattern
rcell Simulate Baddeley-Silverman Cell Process
pairdist.pp3 Pairwise distances in Three Dimensions
copper Berman-Huntington points and lines data
summary.listof Summary of a List of Things
Kinhom Inhomogeneous K-function
as.im Convert to Pixel Image
rmhexpand Specify Simulation Window or Expansion Rule
rStrauss Perfect Simulation of the Strauss Process
boxx Multi-Dimensional Box
clusterset Allard-Fraley Estimator of Cluster Feature
amacrine Hughes' Amacrine Cell Data
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
Extract.splitppp Extract or Replace Sub-Patterns
ppp Create a Point Pattern
endpoints.psp Endpoints of Line Segment Pattern
im Create a Pixel Image Object
rthin Random Thinning
spokes Spokes pattern of dummy points
LambertW Lambert's W Function
crossdist.psp Pairwise distances between two different line segment patterns
ants Harkness-Isham ants' nests data
slrm Spatial Logistic Regression
rotate Rotate
Hest Spherical Contact Distribution Function
predict.ppm Prediction from a Fitted Point Process Model
runifpointOnLines Generate N Uniform Random Points On Line Segments
markvario Mark Variogram
nndist.ppx Nearest Neighbour Distances in Any Dimensions
as.owin Convert Data To Class owin
rstrat Simulate Stratified Random Point Pattern
contour.listof Plot a List of Things
split.ppx Divide Multidimensional Point Pattern into Sub-patterns
pp3 Three Dimensional Point Pattern
shapley Galaxies in the Shapley Supercluster
as.mask Pixel Image Approximation of a Window
DiggleGratton Diggle-Gratton model
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
quadrat.test Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
pairdist.psp Pairwise distances between line segments
rotate.owin Rotate a Window
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
anemones Beadlet Anemones Data
quadratresample Resample a Point Pattern by Resampling Quadrats
pool.fasp Pool Data from Several Function Arrays
perimeter Perimeter Length of Window
is.empty Test Whether An Object Is Empty
idw Inverse-distance weighted smoothing of observations at irregular points
intensity.ppm Intensity of Fitted Point Process Model
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
hist.im Histogram of Pixel Values in an Image
licence.polygons Restricted Licence Conditions for Polygon Calculations
clip.infline Intersect Infinite Straight Lines with a Window
Extract.im Extract Subset of Image
triplet.family Triplet Interaction Family
Extract.linnet Extract Subset of Linear Network
rshift.splitppp Randomly Shift a List of Point Patterns
stieltjes Compute Integral of Function Against Cumulative Distribution
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
unique.ppp Extract Unique Points from a Spatial Point Pattern
flipxy Exchange X and Y Coordinates
raster.x Cartesian Coordinates for a Pixel Raster
residuals.ppm Residuals for Fitted Point Process Model
clickppp Interactively Add Points
plot.hyperframe Plot Entries in a Hyperframe
whist Weighted Histogram
pool.quadrattest Pool Several Quadrat Tests
rounding Detect Numerical Rounding
japanesepines Japanese Pines Point Pattern
pairdist Pairwise distances
Hardcore The Hard Core Point Process Model
stratrand Stratified random point pattern
Kmulti Marked K-Function
plot.psp plot a Spatial Line Segment Pattern
is.multitype.ppm Test Whether A Point Process Model is Multitype
model.matrix.ppm Extract Design Matrix from Point Process Model
plot.tess Plot a tessellation
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
rMosaicField Mosaic Random Field
summary.im Summarizing a Pixel Image
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
hyperframe Hyper Data Frame
harmonic Basis for Harmonic Functions
compatible.fasp Test Whether Function Arrays Are Compatible
quad.object Class of Quadrature Schemes
Extract.tess Extract or Replace Subset of Tessellation
Ord Generic Ord Interaction model
plot.listof Plot a List of Things
interp.colourmap Interpolate smoothly between specified colours
eval.fv Evaluate Expression Involving Functions
plot.slrm Plot a Fitted Spatial Logistic Regression
nnmark Mark of Nearest Neighbour
smooth.fv Apply Smoothing to Function Values
interp.im Interpolate a Pixel Image
square Square Window
rlinegrid Generate grid of parallel lines with random displacement
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
rotate.ppp Rotate a Point Pattern
overlap.owin Compute Area of Overlap
rMosaicSet Mosaic Random Set
Kscaled Locally Scaled K-function
murchison Murchison gold deposits
pairdist.lpp Pairwise shortest-path distances between points on a linear network
linim Create Pixel Image on Linear Network
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
pppmatching.object Class of Point Matchings
runifpointx Generate N Uniform Random Points in Any Dimensions
methods.funxy Methods for Spatial Functions
will.expand Test Expansion Rule
is.owin Test Whether An Object Is A Window
pixellate Convert Spatial Object to Pixel Image
affine.owin Apply Affine Transformation To Window
Gmulti Marked Nearest Neighbour Distance Function
project2segment Move Point To Nearest Line
Kcom Model Compensator of K Function
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
nsegments Number of Line Segments in a Line Segment Pattern
coef.ppm Coefficients of Fitted Point Process Model
reach Interaction Distance of a Point Process
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
scalardilate Apply Scalar Dilation
spatstat-package The Spatstat Package
rmh.ppm Simulate from a Fitted Point Process Model
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
simulate.ppm Simulate a Fitted Gibbs Point Process Model
rshift.ppp Randomly Shift a Point Pattern
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
erosion Morphological Erosion
leverage.ppm Leverage Measure for Spatial Point Process Model
nnmap K-th Nearest Point Map
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Details

Date 2013-09-05
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
LazyLoad true
ByteCompile true
Packaged 2013-09-05 07:48:07 UTC; adrian
NeedsCompilation yes
Repository CRAN
Date/Publication 2013-09-05 11:40:52
depends base (>= 3.0.0) , deldir (>= 0.0-21) , graphics , grDevices , mgcv , R (>= 3.0.0) , stats , utils
suggests gpclib , gsl , locfit , maptools , RandomFields (>= 2.0.60) , rpanel , scatterplot3d , sm , spatial , tensor , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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