spatstat v1.44-1

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by Adrian Baddeley

Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests

Comprehensive open-source toolbox for analysing spatial data, mainly Spatial Point Patterns, including multi-type/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network. Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.

Functions in spatstat

Name Description
plot.layered Layered Plot
plot.quadrattest Display the result of a quadrat counting test.
pppmatching.object Class of Point Matchings
pool.envelope Pool Data from Several Envelopes
quad.object Class of Quadrature Schemes
runiflpp Uniform Random Points on a Linear Network
ppm.ppp Fit Point Process Model to Point Pattern Data
quadratcount Quadrat counting for a point pattern
quantess Quantile Tessellation
pool.quadrattest Pool Several Quadrat Tests
plot.hyperframe Plot Entries in a Hyperframe
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
plot.leverage.ppm Plot Leverage Function
summary.ppp Summary of a Point Pattern Dataset
unique.ppp Extract Unique Points from a Spatial Point Pattern
plot.slrm Plot a Fitted Spatial Logistic Regression
plot.msr Plot a Signed or Vector-Valued Measure
pppmatching Create a Point Matching
ranef.mppm Extract Random Effects from Point Process Model
plot.linim Plot Pixel Image on Linear Network
pool.rat Pool Data from Several Ratio Objects
ppm.object Class of Fitted Point Process Models
plot.texturemap Plot a Texture Map
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
predict.mppm Prediction for Fitted Multiple Point Process Model
plot.solist Plot a List of Spatial Objects
predict.dppm Prediction from a Fitted Determinantal Point Process Model
pool.fasp Pool Data from Several Function Arrays
plot.lppm Plot a Fitted Point Process Model on a Linear Network
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
print.psp Print Brief Details of a Line Segment Pattern Dataset
quasirandom Quasirandom Patterns
profilepl Profile Maximum Pseudolikelihood or AIC
plot.yardstick Plot a Yardstick or Scale Bar
pyramidal Pyramidal Neurons in Cingulate Cortex
segregation.test Test of Spatial Segregation of Types
runifdisc Generate N Uniform Random Points in a Disc
ppp Create a Point Pattern
reduced.sample Reduced Sample Estimator using Histogram Data
pool.anylist Pool Data from a List of Objects
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
stienen Stienen Diagram
rPoissonCluster Simulate Poisson Cluster Process
rcell Simulate Baddeley-Silverman Cell Process
relrisk Estimate of Spatially-Varying Relative Risk
plot.textstring Plot a Text String
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
plot.tess Plot a tessellation
rpoisppx Generate Poisson Point Pattern in Any Dimensions
rhohat Smoothing Estimate of Intensity as Function of a Covariate
rLGCP Simulate Log-Gaussian Cox Process
split.hyperframe Divide Hyperframe Into Subsets and Reassemble
rho2hat Smoothed Relative Density of Pairs of Covariate Values
relrisk.ppm Parametric Estimate of Spatially-Varying Relative Risk
summary.anylist Summary of a List of Things
summary.splitppp Summary of a Split Point Pattern
rgbim Create Colour-Valued Pixel Image
rknn Theoretical Distribution of Nearest Neighbour Distance
redwoodfull California Redwoods Point Pattern (Entire Dataset)
rHardcore Perfect Simulation of the Hardcore Process
subset.hyperframe Subset of Hyperframe Satisfying A Condition
psp Create a Line Segment Pattern
quadratresample Resample a Point Pattern by Resampling Quadrats
rmpoint Generate N Random Multitype Points
plot.onearrow Plot an Arrow
rdpp Simulation of a Determinantal Point Process
residuals.kppm Residuals for Fitted Cox or Cluster Point Process Model
shapley Galaxies in the Shapley Supercluster
tweak.colourmap Change Colour Values in a Colour Map
redwood California Redwoods Point Pattern (Ripley's Subset)
residualspaper Data and Code From JRSS Discussion Paper on Residuals
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
vertices Vertices of a Window
simulate.kppm Simulate a Fitted Cluster Point Process Model
raster.x Cartesian Coordinates for a Pixel Raster
plot.pp3 Plot a Three-Dimensional Point Pattern
rpoislpp Poisson Point Process on a Linear Network
rotate Rotate
rotate.ppp Rotate a Point Pattern
pool Pool Data
rotmean Rotational Average of a Pixel Image
slrm Spatial Logistic Regression
rMaternI Simulate Matern Model I
rotate.owin Rotate a Window
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
zclustermodel Cluster Point Process Model
progressreport Print Progress Reports
print.quad Print a Quadrature Scheme
rNeymanScott Simulate Neyman-Scott Process
spatialcdf Spatial Cumulative Distribution Function
quantile.ewcdf Quantiles of Weighted Empirical Cumulative Distribution Function
rmhexpand Specify Simulation Window or Expansion Rule
ppp.object Class of Point Patterns
rMosaicField Mosaic Random Field
rpoisline Generate Poisson Random Line Process
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
rcellnumber Generate Random Numbers of Points for Cell Process
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
zapsmall.im Rounding of Pixel Values
plot.owin Plot a Spatial Window
pseudoR2 Calculate Pseudo-R-Squared for Point Process Model
reach.dppm Range of Interaction for a Determinantal Point Process Model
rstrat Simulate Stratified Random Point Pattern
plot.ppm plot a Fitted Point Process Model
suffstat Sufficient Statistic of Point Process Model
runifpointOnLines Generate N Uniform Random Points On Line Segments
rescale.owin Convert Window to Another Unit of Length
rThomas Simulate Thomas Process
plot.symbolmap Plot a Graphics Symbol Map
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
simplify.owin Approximate a Polygon by a Simpler Polygon
rpoislinetess Poisson Line Tessellation
rsyst Simulate systematic random point pattern
rescue.rectangle Convert Window Back To Rectangle
rescale.im Convert Pixel Image to Another Unit of Length
square Square Window
solist List of Two-Dimensional Spatial Objects
vcov.slrm Variance-Covariance Matrix for a Fitted Spatial Logistic Regression
plot.splitppp Plot a List of Point Patterns
rshift Random Shift
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
residuals.dppm Residuals for Fitted Determinantal Point Process Model
plot.fv Plot Function Values
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
plot.psp plot a Spatial Line Segment Pattern
simulate.lppm Simulate a Fitted Point Process Model on a Linear Network
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
waterstriders Waterstriders data. Three independent replications of a point pattern formed by insects.
summary.quad Summarizing a Quadrature Scheme
tiles.empty Check For Empty Tiles in a Tessellation
plot.influence.ppm Plot Influence Measure
plot.fasp Plot a Function Array
scalardilate Apply Scalar Dilation
predict.lppm Predict Point Process Model on Linear Network
rshift.psp Randomly Shift a Line Segment Pattern
update.ppm Update a Fitted Point Process Model
plot.ppp plot a Spatial Point Pattern
studpermu.test Studentised Permutation Test
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
unmark Remove Marks
superimpose.lpp Superimpose Several Point Patterns on Linear Network
plot.imlist Plot a List of Images
plot.linnet Plot a linear network
plot.lpp Plot Point Pattern on Linear Network
ponderosa Ponderosa Pine Tree Point Pattern
rmpoispp Generate Multitype Poisson Point Pattern
quadrats Divide Region into Quadrats
rose Rose Diagram
print.im Print Brief Details of an Image
quadrat.test.splitppp Dispersion Test of CSR for Split Point Pattern Based on Quadrat Counts
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
summary.solist Summary of a List of Spatial Objects
setcov Set Covariance of a Window
sumouter Compute Quadratic Forms
shift Apply Vector Translation
swedishpines Swedish Pines Point Pattern
subfits Extract List of Individual Point Process Models
simplenet Simple Example of Linear Network
quantile.density Quantiles of a Density Estimate
predict.kppm Prediction from a Fitted Cluster Point Process Model
summary.im Summarizing a Pixel Image
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
update.symbolmap Update a Graphics Symbol Map.
rounding Detect Numerical Rounding
summary.owin Summary of a Spatial Window
print.ppm Print a Fitted Point Process Model
treeprune Prune Tree to Given Level
varblock Estimate Variance of Summary Statistic by Subdivision
plot.im Plot a Pixel Image
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
rmh.ppm Simulate from a Fitted Point Process Model
pool.fv Pool Several Functions
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
textureplot Plot Image or Tessellation Using Texture Fill
quadscheme Generate a Quadrature Scheme from a Point Pattern
rMaternII Simulate Matern Model II
valid.detpointprocfamily Check Validity of a Determinantal Point Process Model
spiders Spider Webs on Mortar Lines of a Brick Wall
with.msr Evaluate Expression Involving Components of a Measure
plot.mppm plot a Fitted Multiple Point Process Model
tile.areas Compute Areas of Tiles in a Tessellation
scaletointerval Rescale Data to Lie Between Specified Limits
rjitter Random Perturbation of a Point Pattern
spatstat-deprecated Deprecated spatstat functions
simplepanel Simple Point-and-Click Interface Panels
runifpoint3 Generate N Uniform Random Points in Three Dimensions
rPenttinen Perfect Simulation of the Penttinen Process
sporophores Sporophores Data
reflect Reflect In Origin
volume Volume of an Object
update.rmhcontrol Update Control Parameters of Metropolis-Hastings Algorithm
thomas.estK Fit the Thomas Point Process by Minimum Contrast
valid.ppm Check Whether Point Process Model is Valid
plot.plotppm Plot a plotppm Object Created by plot.ppm
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
triangulate.owin Decompose Window into Triangles
rQuasi Generate Quasirandom Point Pattern in Given Window
unitname Name for Unit of Length
split.ppp Divide Point Pattern into Sub-patterns
rotate.psp Rotate a Line Segment Pattern
yardstick Text, Arrow or Scale Bar in a Diagram
rshift.ppp Randomly Shift a Point Pattern
rpoint Generate N Random Points
varcount Predicted Variance of the Number of Points
pp3 Three Dimensional Point Pattern
spatdim Spatial Dimension of a Dataset
update.detpointprocfamily Set Parameter Values in a Determinantal Point Process Model
summary.listof Summary of a List of Things
whist Weighted Histogram
tess Create a Tessellation
rthin Random Thinning
predict.ppm Prediction from a Fitted Point Process Model
plot.scan.test Plot Result of Scan Test
plot.quad Plot a Spatial Quadrature Scheme
transect.im Pixel Values Along a Transect
tilenames Names of Tiles in a Tessellation
shift.owin Apply Vector Translation To Window
scanLRTS Likelihood Ratio Test Statistic for Scan Test
sessionLibs Print Names and Version Numbers of Libraries Loaded
sidelengths.owin Side Lengths of Enclosing Rectangle of a Window
tiles Extract List of Tiles in a Tessellation
stieltjes Compute Integral of Function Against Cumulative Distribution
quantile.im Sample Quantiles of Pixel Image
rMatClust Simulate Matern Cluster Process
print.ppp Print Brief Details of a Point Pattern Dataset
quadrat.test Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
texturemap Texture Map
treebranchlabels Label Vertices of a Tree by Branch Membership
rStrauss Perfect Simulation of the Strauss Process
pppdist Distance Between Two Point Patterns
quadrat.test.mppm Chi-Squared Test for Multiple Point Process Model Based on Quadrat Counts
range.fv Range of Function Values
ppm Fit Point Process Model to Data
rSSI Simulate Simple Sequential Inhibition
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
rescale Convert dataset to another unit of length
shift.ppp Apply Vector Translation To Point Pattern
rlabel Random Re-Labelling of Point Pattern
rotate.im Rotate a Pixel Image
sharpen Data Sharpening of Point Pattern
with.fv Evaluate an Expression in a Function Table
stratrand Stratified random point pattern
timed Record the Computation Time
vesicles Vesicles Data
rescale.ppp Convert Point Pattern to Another Unit of Length
waka Trees in Waka national park
symbolmap Graphics Symbol Map
relevel.im Reorder Levels of a Factor-Valued Image or Pattern
pointsOnLines Place Points Evenly Along Specified Lines
rMosaicSet Mosaic Random Set
residuals.ppm Residuals for Fitted Point Process Model
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
rat Ratio object
union.quad Union of Data and Dummy Points
roc Receiver Operating Characteristic
runifpointx Generate N Uniform Random Points in Any Dimensions
summary.psp Summary of a Line Segment Pattern Dataset
scan.test Spatial Scan Test
vcov.mppm Calculate Variance-Covariance Matrix for Fitted Multiple Point Process Model
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
relrisk.ppp Nonparametric Estimate of Spatially-Varying Relative Risk
rlinegrid Generate grid of parallel lines with random displacement
update.kppm Update a Fitted Cluster Point Process Model
rshift.splitppp Randomly Shift a List of Point Patterns
rnoise Random Pixel Noise
residuals.mppm Residuals for Point Process Model Fitted to Multiple Point Patterns
rescale.psp Convert Line Segment Pattern to Another Unit of Length
spatstat-internal Internal spatstat functions
spatstat.options Internal Options in Spatstat Package
ripras Estimate window from points alone
solapply Apply a Function Over a List and Obtain a List of Objects
runifpoint Generate N Uniform Random Points
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
simdat Simulated Point Pattern
plot.kppm Plot a fitted cluster point process
spatstat-package The Spatstat Package
split.im Divide Image Into Sub-images
print.owin Print Brief Details of a Spatial Window
ppx Multidimensional Space-Time Point Pattern
transmat Convert Pixel Array Between Different Conventions
tileindex Determine Which Tile Contains Each Given Point
will.expand Test Expansion Rule
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
project2set Find Nearest Point in a Region
project2segment Move Point To Nearest Line
Extract.msr Extract Subset of Signed or Vector Measure
Extract.hyperframe Extract or Replace Subset of Hyperframe
Hest Spherical Contact Distribution Function
Extract.owin Extract Subset of Window
quadscheme.logi Generate a Logistic Regression Quadrature Scheme from a Point Pattern
Extract.quad Subset of Quadrature Scheme
Gfox Foxall's Distance Functions
Kdot.inhom Inhomogeneous Multitype K Dot Function
Lcross Multitype L-function (cross-type)
Ldot Multitype L-function (i-to-any)
Poisson Poisson Point Process Model
rGaussPoisson Simulate Gauss-Poisson Process
Kmulti Marked K-Function
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
reach Interaction Distance of a Point Process
OrdThresh Ord's Interaction model
Linhom L-function
Extract.listof Extract or Replace Subset of a List of Things
Jcross Multitype J Function (i-to-j)
Kovesi Colour Sequences with Uniform Perceptual Contrast
DiggleGratton Diggle-Gratton model
Kcross Multitype K Function (Cross-type)
Kmulti.inhom Inhomogeneous Marked K-Function
LennardJones The Lennard-Jones Potential
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
Extract.anylist Extract or Replace Subset of a List of Things
BadGey Hybrid Geyer Point Process Model
Lcross.inhom Inhomogeneous Cross Type L Function
Strauss The Strauss Point Process Model
Extract.psp Extract Subset of Line Segment Pattern
bind.fv Combine Function Value Tables
Finhom Inhomogeneous Empty Space Function
Extract.lpp Extract Subset of Point Pattern on Linear Network
as.matrix.im Convert Pixel Image to Matrix or Array
Iest Estimate the I-function
Extract.solist Extract or Replace Subset of a List of Spatial Objest
berman.test Berman's Tests for Point Process Model
as.function.fv Convert Function Value Table to Function
border Border Region of a Window
Ord Generic Ord Interaction model
Kinhom Inhomogeneous K-function
Frame Extract or Change the Containing Rectangle of a Spatial Object
Kmodel K Function or Pair Correlation Function of a Point Process Model
corners Corners of a rectangle
MultiHard The Multitype Hard Core Point Process Model
add.texture Fill Plot With Texture
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
clusterfield Field of clusters
LambertW Lambert's W Function
as.function.im Convert Pixel Image to Function of Coordinates
austates Australian States and Mainland Territories
as.linnet.psp Convert Line Segment Pattern to Linear Network
HierStraussHard The Hierarchical Strauss Hard Core Point Process Model
as.mask Pixel Image Approximation of a Window
coef.ppm Coefficients of Fitted Point Process Model
Fiksel The Fiksel Interaction
Saturated Saturated Pairwise Interaction model
dppapproxkernel Approximate Determinantal Point Process Kernel
Hardcore The Hard Core Point Process Model
by.im Apply Function to Image Broken Down by Factor
as.im Convert to Pixel Image
Extract.linnet Extract Subset of Linear Network
Extract.influence.ppm Extract Subset of Influence Object
round.ppp Apply Numerical Rounding to Spatial Coordinates
Extract.tess Extract or Replace Subset of Tessellation
scanpp Read Point Pattern From Data File
Extract.im Extract Subset of Image
affine.psp Apply Affine Transformation To Line Segment Pattern
Kmeasure Reduced Second Moment Measure
Ldot.inhom Inhomogeneous Multitype L Dot Function
dg.progress Progress Plot of Dao-Genton Test of Spatial Pattern
Fest Estimate the Empty Space Function or its Hazard Rate
Window Extract or Change the Window of a Spatial Object
Kcross.inhom Inhomogeneous Cross K Function
Kmodel.kppm K Function or Pair Correlation Function of Cluster Model or Cox model
demopat Artificial Data Point Pattern
Smooth.ppp Spatial smoothing of observations at irregular points
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
simulate.dppm Simulation of Determinantal Point Process Model
Kres Residual K Function
deriv.fv Calculate Derivative of Function Values
Triplets The Triplet Point Process Model
beginner Print Introduction For Beginners
MultiStrauss The Multitype Strauss Point Process Model
as.solist Convert List of Two-Dimensional Spatial Objects
Jinhom Inhomogeneous J-function
allstats Calculate four standard summary functions of a point pattern.
crossing.psp Crossing Points of Two Line Segment Patterns
as.hyperframe Convert Data to Hyperframe
convexhull.xy Convex Hull of Points
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
simulate.ppm Simulate a Fitted Gibbs Point Process Model
as.psp Convert Data To Class psp
delaunayNetwork Linear Network of Delaunay Triangulation or Dirichlet Tessellation
as.layered Convert Data To Layered Object
dclf.sigtrace Significance Trace of Cressie-Loosmore-Ford or Maximum Absolute Deviation Test
Smooth.fv Apply Smoothing to Function Values
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
blur Apply Gaussian Blur to a Pixel Image
as.tess Convert Data To Tessellation
Smoothfun.ppp Smooth Interpolation of Marks as a Spatial Function
localK Neighbourhood density function
as.lpp Convert Data to a Point Pattern on a Linear Network
Kest.fft K-function using FFT
affine.im Apply Affine Transformation To Pixel Image
closing Morphological Closing
affine.tess Apply Geometrical Transformation To Tessellation
dclf.test Diggle-Cressie-Loosmore-Ford and Maximum Absolute Deviation Tests
Extract.leverage.ppm Extract Subset of Leverage Object
bounding.box.xy Convex Hull of Points
branchlabelfun Tree Branch Membership Labelling Function
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
cdf.test Spatial Distribution Test for Point Pattern or Point Process Model
Concom The Connected Component Process Model
WindowOnly Extract Window of Spatial Object
contour.imlist Array of Contour Plots
increment.fv Increments of a Function
CDF Cumulative Distribution Function From Kernel Density Estimate
convexhull Convex Hull
beachcolours Create Colour Scheme for a Range of Numbers
spokes Spokes pattern of dummy points
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
edit.hyperframe Invoke Text Editor on Hyperframe
betacells Beta Ganglion Cells in Cat Retina
Kmodel.ppm K Function or Pair Correlation Function of Gibbs Point Process model
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
as.interact Extract Interaction Structure
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
dkernel Kernel distributions and random generation
as.boxx Convert Data to Multi-Dimensional Box
dppspecden Extract Spectral Density from Determinantal Point Process Model Object
is.multitype.ppm Test Whether A Point Process Model is Multitype
boxx Multi-Dimensional Box
Smooth Spatial smoothing of data
centroid.owin Centroid of a window
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
eval.linim Evaluate Expression Involving Pixel Images on Linear Network
mergeLevels Merge Levels of a Factor
as.ppp Convert Data To Class ppp
bdist.points Distance to Boundary of Window
clickppp Interactively Add Points
as.data.frame.owin Convert Window to Data Frame
summary.kppm Summarizing a Fitted Cox or Cluster Point Process Model
Hybrid Hybrid Interaction Point Process Model
subset.ppp Subset of Point Pattern Satisfying A Condition
kaplan.meier Kaplan-Meier Estimator using Histogram Data
is.empty Test Whether An Object Is Empty
connected.ppp Connected components of a point pattern
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
begins Check Start of Character String
StraussHard The Strauss / Hard Core Point Process Model
dirichletWeights Compute Quadrature Weights Based on Dirichlet Tessellation
affine.ppp Apply Affine Transformation To Point Pattern
harmonise.fv Make Function Tables Compatible
concatxy Concatenate x,y Coordinate Vectors
envelope.envelope Recompute Envelopes
Extract.layered Extract or Replace Subset of a Layered Object
circdensity Density Estimation for Circular Data
areaGain Difference of Disc Areas
Math.im S3 Group Generic methods for images
dppeigen Internal function calculating eig and index
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
compatible.fasp Test Whether Function Arrays Are Compatible
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
bdist.tiles Distance to Boundary of Window
gridcentres Rectangular grid of points
linnet Create a Linear Network
Ksector Sector K-function
murchison Murchison gold deposits
anova.ppm ANOVA for Fitted Point Process Models
integral.im Integral of a Pixel Image
is.dppm Recognise Fitted Determinantal Point Process Models
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
circumradius Circumradius of a Window
Kmodel.dppm K-function or Pair Correlation Function of a Determinantal Point Process Model
chicago Chicago Street Crime Data
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
crossdist.lpp Pairwise distances between two point patterns on a linear network
as.data.frame.ppp Coerce Point Pattern to a Data Frame
cdf.test.mppm Spatial Distribution Test for Multiple Point Process Model
cbind.hyperframe Combine Hyperframes by Rows or by Columns
spruces Spruces Point Pattern
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
linearKcross Multitype K Function (Cross-type) for Linear Point Pattern
applynbd Apply Function to Every Neighbourhood in a Point Pattern
Gmulti Marked Nearest Neighbour Distance Function
plot.dppm Plot a fitted determinantal point process
deltametric Delta Metric
edge.Trans Translation Edge Correction
flipxy Exchange X and Y Coordinates
distfun.lpp Distance Map on Linear Network
area.owin Area of a Window
Extract.splitppp Extract or Replace Sub-Patterns
gridweights Compute Quadrature Weights Based on Grid Counts
superimpose Superimpose Several Geometric Patterns
nndist.ppx Nearest Neighbour Distances in Any Dimensions
box3 Three-Dimensional Box
as.linnet.linim Extract Linear Network from Data on a Linear Network
copyExampleFiles Copy Data Files for Example
clusterradius Compute or Extract Effective Range of Cluster Kernel
discpartarea Area of Part of Disc
demohyper Demonstration Example of Hyperframe of Spatial Data
bw.frac Bandwidth Selection Based on Window Geometry
dppspecdenrange Range of Spectral Density of a Determinantal Point Process Model
bw.ppl Likelihood Cross Validation Bandwidth Selection for Kernel Density
Kscaled Locally Scaled K-function
valid Check Whether Point Process Model is Valid
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
intensity.ppx Intensity of a Multidimensional Space-Time Point Pattern
hamster Aherne's hamster tumour data
pairs.im Scatterplot Matrix for Pixel Images
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
nearest.raster.point Find Pixel Nearest to a Given Point
eem Exponential Energy Marks
default.dummy Generate a Default Pattern of Dummy Points
Kest K-function
as.linim Convert to Pixel Image on Linear Network
npfun Dummy Function Returns Number of Points
colourmap Colour Lookup Tables
Replace.im Reset Values in Subset of Image
methods.linnet Methods for Linear Networks
formula.fv Extract or Change the Plot Formula for a Function Value Table
crossdist.ppp Pairwise distances between two different point patterns
Ginhom Inhomogeneous Nearest Neighbour Function
localKinhom Inhomogeneous Neighbourhood Density Function
erosion Morphological Erosion
as.function.tess Convert a Tessellation to a Function
grow.rectangle Add margins to rectangle
dppapproxpcf Approximate Pair Correlation Function of Determinantal Point Process Model
fasp.object Function Arrays for Spatial Patterns
linearpcfdot Multitype Pair Correlation Function (Dot-type) for Linear Point Pattern
identify.psp Identify Segments in a Line Segment Pattern
contour.im Contour plot of pixel image
as.polygonal Convert a Window to a Polygonal Window
dppBessel Bessel Type Determinantal Point Process Model
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
logLik.kppm Log Likelihood and AIC for Fitted Cox or Cluster Point Process Model
amacrine Hughes' Amacrine Cell Data
linearKinhom Inhomogeneous Linear K Function
kppm Fit Cluster or Cox Point Process Model
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
dppkernel Extract Kernel from Determinantal Point Process Model Object
is.subset.owin Determine Whether One Window is Contained In Another
dppparbounds Parameter Bound for a Determinantal Point Process Model
dppPowerExp Power Exponential Spectral Determinantal Point Process Model
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
coef.mppm Coefficients of Point Process Model Fitted to Multiple Point Patterns
improve.kppm Improve Intensity Estimate of Fitted Cluster Point Process Model
unnormdensity Weighted kernel smoother
is.ppp Test Whether An Object Is A Point Pattern
intensity Intensity of a Dataset or a Model
dendrite Dendritic Spines Data
dmixpois Mixed Poisson Distribution
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
inforder.family Infinite Order Interaction Family
pcf.fasp Pair Correlation Function obtained from array of K functions
invoke.symbolmap Plot Data Using Graphics Symbol Map
edges2vees List Dihedral Triples in a Graph
eval.fasp Evaluate Expression Involving Function Arrays
nnwhich.lpp Identify Nearest Neighbours on a Linear Network
clickdist Interactively Measure Distance
linearK Linear K Function
clarkevans Clark and Evans Aggregation Index
kernel.factor Scale factor for density kernel
as.rectangle Window Frame
compatible.im Test Whether Pixel Images Are Compatible
auc Area Under ROC Curve
nnmap K-th Nearest Point Map
linearmarkconnect Mark Connection Function for Multitype Point Pattern on Linear Network
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
layout.boxes Generate a Row or Column Arrangement of Rectangles.
dg.test Dao-Genton Adjusted Goodness-Of-Fit Test
funxy Spatial Function Class
discretise Safely Convert Point Pattern Window to Binary Mask
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
convolve.im Convolution of Pixel Images
ewcdf Weighted Empirical Cumulative Distribution Function
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
envelope Simulation Envelopes of Summary Function
hopskel Hopkins-Skellam Test
HierStrauss The Hierarchical Strauss Point Process Model
clusterset Allard-Fraley Estimator of Cluster Feature
methods.rhohat Methods for Intensity Functions of Spatial Covariate
edge.Ripley Ripley's Isotropic Edge Correction
multiplicity.ppp Count Multiplicity of Duplicate Points
areaLoss Difference of Disc Areas
methods.ppx Methods for Multidimensional Space-Time Point Patterns
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
ants Harkness-Isham ants' nests data
is.multitype.ppp Test Whether A Point Pattern is Multitype
emend Force Model to be Valid
edges2triangles List Triangles in a Graph
hextess Hexagonal Grid or Tessellation
distcdf Distribution Function of Interpoint Distance
distfun Distance Map as a Function
lppm Fit Point Process Model to Point Pattern on Linear Network
latest.news Print News About Latest Version of Package
as.box3 Convert Data to Three-Dimensional Box
gordon People in Gordon Square
eval.im Evaluate Expression Involving Pixel Images
anylist List of Objects
hyperframe Hyper Data Frame
im.object Class of Images
envelope.lpp Envelope for Point Patterns on Linear Network
markcrosscorr Mark Cross-Correlation Function
gorillas Gorilla Nesting Sites
logLik.ppm Log Likelihood and AIC for Point Process Model
Extract.fasp Extract Subset of Function Array
linearmarkequal Mark Connection Function for Multitype Point Pattern on Linear Network
lpp Create Point Pattern on Linear Network
levelset Level Set of a Pixel Image
flu Influenza Virus Proteins
dirichlet Dirichlet Tessellation of Point Pattern
intersect.owin Intersection, Union or Set Subtraction of Windows
hist.im Histogram of Pixel Values in an Image
mincontrast Method of Minimum Contrast
clickbox Interactively Define a Rectangle
interp.colourmap Interpolate smoothly between specified colours
edges Extract Boundary Edges of a Window.
leverage.ppm Leverage Measure for Spatial Point Process Model
is.marked.ppm Test Whether A Point Process Model is Marked
pairwise.family Pairwise Interaction Process Family
linim Create Pixel Image on Linear Network
Pairwise Generic Pairwise Interaction model
boundingbox Bounding Box of a Window, Image, or Point Pattern
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
istat Point and Click Interface for Exploratory Analysis of Point Pattern
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
nndensity.ppp Estimate Intensity of Point Pattern Using Nearest Neighbour Distances
closepairs.pp3 Close Pairs of Points in 3 Dimensions
logLik.mppm Log Likelihood and AIC for Multiple Point Process Model
crossdist.default Pairwise distances between two different sets of points
clip.infline Intersect Infinite Straight Lines with a Window
nearestsegment Find Line Segment Nearest to Each Point
chorley Chorley-Ribble Cancer Data
pixelquad Quadrature Scheme Based on Pixel Grid
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
nnwhich.pp3 Nearest neighbours in three dimensions
Gest Nearest Neighbour Distance Function G
fitted.mppm Fitted Conditional Intensity for Multiple Point Process Model
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
fitted.lppm Fitted Intensity for Point Process on Linear Network
pcf.fv Pair Correlation Function obtained from K Function
intensity.dppm Intensity of Determinantal Point Process Model
maxnndist Compute Minimum or Maximum Nearest-Neighbour Distance
bramblecanes Hutchings' Bramble Canes data
lansing Lansing Woods Point Pattern
compatible Test Whether Objects Are Compatible
methods.kppm Methods for Cluster Point Process Models
iplot Point and Click Interface for Displaying Spatial Data
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
pairorient Point Pair Orientation Distribution
complement.owin Take Complement of a Window
dppCauchy Generalized Cauchy Determinantal Point Process Model
model.frame.ppm Extract the Variables in a Point Process Model
logLik.dppm Log Likelihood and AIC for Fitted Determinantal Point Process Model
Emark Diagnostics for random marking
matchingdist Distance for a Point Pattern Matching
miplot Morisita Index Plot
inside.owin Test Whether Points Are Inside A Window
methods.pp3 Methods for three-dimensional point patterns
clarkevans.test Clark and Evans Test
distmap.psp Distance Map of Line Segment Pattern
lurking Lurking variable plot
pairdist Pairwise distances
is.stationary Recognise Stationary and Poisson Point Process Models
plot.quadratcount Plot Quadrat Counts
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
Penttinen Penttinen Interaction
PPversion Transform a Function into its P-P or Q-Q Version
closepairs Close Pairs of Points
nestsplit Nested Split
bdist.pixels Distance to Boundary of Window
data.ppm Extract Original Data from a Fitted Point Process Model
grow.boxx Add margins to box in any dimension
influence.ppm Influence Measure for Spatial Point Process Model
methods.dppm Methods for Determinantal Point Process Models
bronzefilter Bronze gradient filter data
exactMPLEstrauss Exact Maximum Pseudolikelihood Estimate for Stationary Strauss Process
Kcom Model Compensator of K Function
fixef.mppm Extract Fixed Effects from Point Process Model
pcfinhom Inhomogeneous Pair Correlation Function
anova.mppm ANOVA for Fitted Point Process Models for Replicated Patterns
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
ganglia Beta Ganglion Cells in Cat Retina, Old Version
domain Extract the Domain of any Spatial Object
eroded.areas Areas of Morphological Erosions
nnwhich Nearest neighbour
inside.boxx Test Whether Points Are Inside A Multidimensional Box
methods.lpp Methods for Point Patterns on a Linear Network
pixellate.owin Convert Window to Pixel Image
layered Create List of Plotting Layers
pcfdot Multitype pair correlation function (i-to-any)
model.images Compute Images of Constructed Covariates
owin Create a Window
density.psp Kernel Smoothing of Line Segment Pattern
paracou Kimboto trees at Paracou, French Guiana
clickpoly Interactively Define a Polygon
affine.lpp Apply Geometrical Transformations to Point Pattern on a Linear Network
moribund Outdated Functions
crossdist.psp Pairwise distances between two different line segment patterns
dfbetas.ppm Parameter influence measure
fardist Farthest Distance to Boundary of Window
longleaf Longleaf Pines Point Pattern
nztrees New Zealand Trees Point Pattern
markcorr Mark Correlation Function
F3est Empty Space Function of a Three-Dimensional Point Pattern
clmfires Castilla-La Mancha Forest Fires
perspPoints Draw Points or Lines on a Surface Viewed in Perspective
rpoispp Generate Poisson Point Pattern
dppMatern Whittle-Matern Determinantal Point Process Model
intensity.lpp Empirical Intensity of Point Pattern on Linear Network
fv Create a Function Value Table
nnclean Nearest Neighbour Clutter Removal
disc Circular Window
methods.layered Methods for Layered Objects
interp.im Interpolate a Pixel Image
linearKdot Multitype K Function (Dot-type) for Linear Point Pattern
as.fv Convert Data To Class fv
linearpcfcross Multitype Pair Correlation Function (Cross-type) for Linear Point Pattern
formula.ppm Model Formulae for Gibbs Point Process Models
emend.ppm Force Point Process Model to be Valid
fv.object Function Value Table
commonGrid Determine A Common Spatial Domain And Pixel Resolution
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
connected Connected components
pcf.ppp Pair Correlation Function of Point Pattern
dilated.areas Areas of Morphological Dilations
dummify Convert Data to Numeric Values by Constructing Dummy Variables
append.psp Combine Two Line Segment Patterns
is.lpp Test Whether An Object Is A Point Pattern on a Linear Network
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
fourierbasis Fourier Basis Functions
linearpcf Linear Pair Correlation Function
deletebranch Delete or Extract a Branch of a Tree
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
foo Foo is Not a Real Name
nnmark Mark of Nearest Neighbour
plot.colourmap Plot a Colour Map
convexify Weil's Convexifying Operation
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
intensity.ppp Empirical Intensity of Point Pattern
nndist.pp3 Nearest neighbour distances in three dimensions
identify.ppp Identify Points in a Point Pattern
Kmark Mark-Weighted K Function
clusterfit Fit Cluster or Cox Point Process Model via Minimum Contrast
dg.sigtrace Significance Trace of Dao-Genton Test
intensity.ppm Intensity of Fitted Point Process Model
as.matrix.owin Convert Pixel Image to Matrix
pcf Pair Correlation Function
nncross.lpp Nearest Neighbours on a Linear Network
Extract.ppp Extract or Replace Subset of Point Pattern
nncross Nearest Neighbours Between Two Patterns
Math.linim S3 Group Generic Methods for Images on a Linear Network
simba Simulated data from a two-group experiment with replication within each group.
harmonise.owin Make Windows Compatible
padimage Pad the Border of a Pixel Image
compatible.fv Test Whether Function Objects Are Compatible
fitin.ppm Extract the Interaction from a Fitted Point Process Model
pairdist.lpp Pairwise shortest-path distances between points on a linear network
bdspots Breakdown Spots in Microelectronic Materials
cells Biological Cells Point Pattern
plot.anylist Plot a List of Things
dppGauss Gaussian Determinantal Point Process Model
diameter Diameter of an Object
npoints Number of Points in a Point Pattern
diameter.linnet Circumradius and Diameter of a Linear Network
msr Signed or Vector-Valued Measure
crossdist Pairwise distances
is.marked.ppp Test Whether A Point Pattern is Marked
parres Partial Residuals for Point Process Model
fitted.ppm Fitted Conditional Intensity for Point Process Model
japanesepines Japanese Pines Point Pattern
distmap Distance Map
HierHard The Hierarchical Hard Core Point Process Model
detpointprocfamilyfun Construct a New Determinantal Point Process Model Family Function
finpines Pine saplings in Finland.
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
harmonise Make Objects Compatible
humberside Humberside Data on Childhood Leukaemia and Lymphoma
as.ppm Extract Fitted Point Process Model
is.owin Test Whether An Object Is A Window
idw Inverse-distance weighted smoothing of observations at irregular points
harmonise.im Make Pixel Images Compatible
objsurf Objective Function Surface
distmap.ppp Distance Map of Point Pattern
pairdist.default Pairwise distances
reload.or.compute Compute Unless Previously Saved
hierpair.family Hierarchical Pairwise Interaction Process Family
methods.linfun Methods for Functions on Linear Network
clickjoin Interactively join vertices on a plot
nbfires Point Patterns of New Brunswick Forest Fires
ippm Fit Point Process Model Involving Irregular Trend Parameters
methods.box3 Methods for Three-Dimensional Box
K3est K-function of a Three-Dimensional Point Pattern
integral.linim Integral on a Linear Network
discs Union of Discs
model.depends Identify Covariates Involved in each Model Term
logLik.slrm Loglikelihood of Spatial Logistic Regression
delaunayDistance Distance on Delaunay Triangulation
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
linearKdot.inhom Inhomogeneous multitype K Function (Dot-type) for Linear Point Pattern
methods.linim Methods for Images on a Linear Network
shift.psp Apply Vector Translation To Line Segment Pattern
letterR Window in Shape of Letter R
delaunay Delaunay Triangulation of Point Pattern
nndist Nearest neighbour distances
opening Morphological Opening
linearpcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Dot-type) for Linear Point Pattern
incircle Find Largest Circle Inside Window
methods.zclustermodel Methods for Cluster Models
methods.objsurf Methods for Objective Function Surfaces
clusterkernel Extract Cluster Offspring Kernel
methods.funxy Methods for Spatial Functions
chop.tess Subdivide a Window or Tessellation using a Set of Lines
is.multitype Test whether Object is Multitype
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
pairdist.ppp Pairwise distances
is.marked Test Whether Marks Are Present
copper Berman-Huntington points and lines data
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
psp.object Class of Line Segment Patterns
intensity.quadratcount Intensity Estimates Using Quadrat Counts
fvnames Abbreviations for Groups of Columns in Function Value Table
is.hybrid Test Whether Object is a Hybrid
eval.fv Evaluate Expression Involving Functions
linearpcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-type) for Linear Point Pattern
mppm Fit Point Process Model to Several Point Patterns
layerplotargs Extract or Replace the Plot Arguments of a Layered Object
expand.owin Apply Expansion Rule
methods.boxx Methods for Multi-Dimensional Box
hyytiala Scots pines and other trees at Hyytiala
nnfun Nearest Neighbour Index Map as a Function
nsegments Number of Line Segments in a Line Segment Pattern
imcov Spatial Covariance of a Pixel Image
dppm Fit Determinantal Point Process Model
localpcf Local pair correlation function
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
infline Infinite Straight Lines
overlap.owin Compute Area of Overlap
linfun Function on a Linear Network
dirichletAreas Compute Areas of Tiles in Dirichlet Tessellation
ord.family Ord Interaction Process Family
anemones Beadlet Anemones Data
mucosa Cells in Gastric Mucosa
endpoints.psp Endpoints of Line Segment Pattern
summary.ppm Summarizing a Fitted Point Process Model
Lest L-function
lixellate Subdivide Segments of a Network
dilation Morphological Dilation
plot.bermantest Plot Result of Berman Test
marks.tess Marks of a Tessellation
pairdist.psp Pairwise distances between line segments
pairsat.family Saturated Pairwise Interaction Point Process Family
model.matrix.ppm Extract Design Matrix from Point Process Model
bei Tropical rain forest trees
im.apply Apply Function Pixelwise to List of Images
AreaInter The Area Interaction Point Process Model
parameters Extract Model Parameters in Understandable Form
dim.detpointprocfamily Dimension of Determinantal Point Process Model
lohboot Bootstrap Confidence Bands for Summary Function
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
default.expand Default Expansion Rule for Simulation of Model
is.rectangle Determine Type of Window
Smooth.msr Smooth a Signed or Vector-Valued Measure
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
dirichletVertices Vertices and Edges of Dirichlet Tessellation
nndist.psp Nearest neighbour distances between line segments
is.im Test Whether An Object Is A Pixel Image
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
lineardisc Compute Disc of Given Radius in Linear Network
nnwhich.ppx Nearest Neighbours in Any Dimensions
colourtools Convert and Compare Colours in Different Formats
lengths.psp Lengths of Line Segments
is.convex Test Whether a Window is Convex
methods.slrm Methods for Spatial Logistic Regression Models
midpoints.psp Midpoints of Line Segment Pattern
periodify Make Periodic Copies of a Spatial Pattern
selfcut.psp Cut Line Segments Where They Intersect
pcfcross Multitype pair correlation function (cross-type)
nnorient Nearest Neighbour Orientation Distribution
markvario Mark Variogram
compareFit Residual Diagnostics for Multiple Fitted Models
pixelcentres Extract Pixel Centres as Point Pattern
pixellate Convert Spatial Object to Pixel Image
diameter.owin Diameter of a Window
distmap.owin Distance Map of Window
methods.lppm Methods for Fitted Point Process Models on a Linear Network
pairdist.ppx Pairwise Distances in Any Dimensions
Gcom Model Compensator of Nearest Neighbour Function
run.simplepanel Run Point-and-Click Interface
plot.listof Plot a List of Things
affine.owin Apply Affine Transformation To Window
persp.im Perspective Plot of Pixel Image
markconnect Mark Connection Function
is.ppm Test Whether An Object Is A Fitted Point Process Model
split.ppx Divide Multidimensional Point Pattern into Sub-patterns
marks.psp Marks of a Line Segment Pattern
pairdist.pp3 Pairwise distances in Three Dimensions
model.matrix.slrm Extract Design Matrix from Spatial Logistic Regression Model
owin.object Class owin
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
as.data.frame.im Convert Pixel Image to Data Frame
urkiola Urkiola Woods Point Pattern
marks Marks of a Point Pattern
methods.units Methods for Units
nnfun.lpp Nearest Neighbour Map on Linear Network
lut Lookup Tables
diameter.box3 Geometrical Calculations for Three-Dimensional Box
methods.fii Methods for Fitted Interactions
gauss.hermite Gauss-Hermite Quadrature Approximation to Expectation for Normal Distribution
angles.psp Orientation Angles of Line Segments
integral.msr Integral of a Measure
pixellate.ppp Convert Point Pattern to Pixel Image
perimeter Perimeter Length of Window
Jdot Multitype J Function (i-to-any)
dg.envelope Global Envelopes for Dao-Genton Test
cut.im Convert Pixel Image from Numeric to Factor
Jmulti Marked J Function
hybrid.family Hybrid Interaction Family
triplet.family Triplet Interaction Family
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
affine Apply Affine Transformation
heather Diggle's Heather Data
Extract.ppx Extract Subset of Multidimensional Point Pattern
Gres Residual G Function
im Create a Pixel Image Object
selfcrossing.psp Crossing Points in a Line Segment Pattern
Extract.fv Extract or Replace Subset of Function Values
pcfmulti Marked pair correlation function
cut.ppp Classify Points in a Point Pattern
Jest Estimate the J-function
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
rtemper Simulated Annealing or Simulated Tempering for Gibbs Point Processes
intersect.tess Intersection of Two Tessellations
pixellate.psp Convert Line Segment Pattern to Pixel Image
trim.rectangle Cut margins from rectangle
Kdot Multitype K Function (i-to-any)
plot.envelope Plot a Simulation Envelope
shift.im Apply Vector Translation To Pixel Image
Softcore The Soft Core Point Process Model
addvar Added Variable Plot for Point Process Model
Tstat Third order summary statistic
panel.contour Panel Plots using Colour Image or Contour Lines
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
as.owin Convert Data To Class owin
density.ppp Kernel Smoothed Intensity of Point Pattern
density.lpp Kernel Estimate of Intensity on a Linear Network
dclf.progress Progress Plot of Test of Spatial Pattern
edit.ppp Invoke Text Editor on Spatial Data
harmonic Basis for Harmonic Functions
fryplot Fry Plot of Point Pattern
ellipse Elliptical Window.
linearKcross.inhom Inhomogeneous multitype K Function (Cross-type) for Linear Point Pattern
nncross.pp3 Nearest Neighbours Between Two Patterns in 3D
plot.cdftest Plot a Spatial Distribution Test
nndist.lpp Nearest neighbour distances on a linear network
Geyer Geyer's Saturation Point Process Model
collapse.fv Collapse Several Function Tables into One
affine.linnet Apply Geometrical Transformations to a Linear Network
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Details

Nickname Gift Horse
Date 2015-12-29
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
NeedsCompilation yes
ByteCompile true
BugReports https://github.com/spatstat/spatstat/issues
Packaged 2015-12-29 09:03:39 UTC; adrian
Repository CRAN
Date/Publication 2015-12-29 22:08:27
imports abind , deldir (>= 0.0-21) , goftest , Matrix , mgcv , polyclip (>= 1.3-0) , tensor
depends base (>= 3.2.2) , graphics , grDevices , methods , nlme , R (>= 3.2.2) , stats , utils
suggests gsl , locfit , maptools , RandomFields (>= 3.0.0) , rpanel , sm , spatial , tkrplot
Contributors Adrian Baddeley, Rolf Turner, Ege Rubak

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