spatstat v1.45-2

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by Adrian Baddeley

Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests

Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.

Functions in spatstat

Name Description
ppp Create a Point Pattern
profilepl Fit Models by Profile Maximum Pseudolikelihood or AIC
ppm.object Class of Fitted Point Process Models
quadrat.test Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
project2segment Move Point To Nearest Line
pool.anylist Pool Data from a List of Objects
plot.splitppp Plot a List of Point Patterns
rMaternII Simulate Matern Model II
pppmatching.object Class of Point Matchings
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
quantile.ewcdf Quantiles of Weighted Empirical Cumulative Distribution Function
predict.lppm Predict Point Process Model on Linear Network
pool.quadrattest Pool Several Quadrat Tests
print.psp Print Brief Details of a Line Segment Pattern Dataset
plot.textstring Plot a Text String
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
predict.rppm Make Predictions From a Recursively Partitioned Point Process Model
pp3 Three Dimensional Point Pattern
rLGCP Simulate Log-Gaussian Cox Process
plot.yardstick Plot a Yardstick or Scale Bar
rStrauss Perfect Simulation of the Strauss Process
plot.texturemap Plot a Texture Map
project2set Find Nearest Point in a Region
ppm.ppp Fit Point Process Model to Point Pattern Data
pyramidal Pyramidal Neurons in Cingulate Cortex
plot.solist Plot a List of Spatial Objects
quadrats Divide Region into Quadrats
ppx Multidimensional Space-Time Point Pattern
predict.ppm Prediction from a Fitted Point Process Model
relrisk.ppp Nonparametric Estimate of Spatially-Varying Relative Risk
pointsOnLines Place Points Evenly Along Specified Lines
rnoise Random Pixel Noise
pool.envelope Pool Data from Several Envelopes
ppmInfluence Leverage and Influence Measures for Spatial Point Process Model
rMosaicSet Mosaic Random Set
predict.kppm Prediction from a Fitted Cluster Point Process Model
relrisk.ppm Parametric Estimate of Spatially-Varying Relative Risk
pool.fasp Pool Data from Several Function Arrays
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
quadratresample Resample a Point Pattern by Resampling Quadrats
quad.object Class of Quadrature Schemes
rGaussPoisson Simulate Gauss-Poisson Process
prune.rppm Prune a Recursively Partitioned Point Process Model
progressreport Print Progress Reports
reach Interaction Distance of a Point Process
residuals.dppm Residuals for Fitted Determinantal Point Process Model
print.ppm Print a Fitted Point Process Model
reflect Reflect In Origin
ppm Fit Point Process Model to Data
residuals.kppm Residuals for Fitted Cox or Cluster Point Process Model
pppmatching Create a Point Matching
redwood California Redwoods Point Pattern (Ripley's Subset)
plot.tess Plot a tessellation
relevel.im Reorder Levels of a Factor-Valued Image or Pattern
rThomas Simulate Thomas Process
psp Create a Line Segment Pattern
print.im Print Brief Details of an Image
ponderosa Ponderosa Pine Tree Point Pattern
pppdist Distance Between Two Point Patterns
rho2hat Smoothed Relative Density of Pairs of Covariate Values
redwoodfull California Redwoods Point Pattern (Entire Dataset)
relrisk Estimate of Spatially-Varying Relative Risk
rotate Rotate
raster.x Cartesian Coordinates for a Pixel Raster
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
rpoint Generate N Random Points
rSSI Simulate Simple Sequential Inhibition
rescale.owin Convert Window to Another Unit of Length
rmh.ppm Simulate from a Fitted Point Process Model
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
rotate.psp Rotate a Line Segment Pattern
print.owin Print Brief Details of a Spatial Window
quasirandom Quasirandom Patterns
rmpoispp Generate Multitype Poisson Point Pattern
rMosaicField Mosaic Random Field
quadrat.test.mppm Chi-Squared Test for Multiple Point Process Model Based on Quadrat Counts
shift.ppp Apply Vector Translation To Point Pattern
rMaternI Simulate Matern Model I
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
quantile.im Sample Quantiles of Pixel Image
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
rose Rose Diagram
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
pool Pool Data
rcell Simulate Baddeley-Silverman Cell Process
rPenttinen Perfect Simulation of the Penttinen Process
residuals.mppm Residuals for Point Process Model Fitted to Multiple Point Patterns
range.fv Range of Function Values
rdpp Simulation of a Determinantal Point Process
rPoissonCluster Simulate Poisson Cluster Process
quadrat.test.splitppp Dispersion Test of CSR for Split Point Pattern Based on Quadrat Counts
runifpointOnLines Generate N Uniform Random Points On Line Segments
psp.object Class of Line Segment Patterns
slrm Spatial Logistic Regression
rNeymanScott Simulate Neyman-Scott Process
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
rescale.ppp Convert Point Pattern to Another Unit of Length
rcellnumber Generate Random Numbers of Points for Cell Process
ranef.mppm Extract Random Effects from Point Process Model
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
rpoispp Generate Poisson Point Pattern
quadratcount Quadrat counting for a point pattern
rat Ratio object
spatdim Spatial Dimension of a Dataset
reload.or.compute Compute Unless Previously Saved
residualspaper Data and Code From JRSS Discussion Paper on Residuals
roc Receiver Operating Characteristic
subset.ppp Subset of Point Pattern Satisfying A Condition
rknn Theoretical Distribution of Nearest Neighbour Distance
rhohat Smoothing Estimate of Intensity as Function of a Covariate
print.quad Print a Quadrature Scheme
rescale.im Convert Pixel Image to Another Unit of Length
requireversion Require a Specific Version of a Package
rounding Detect Numerical Rounding
rthin Random Thinning
rshift.splitppp Randomly Shift a List of Point Patterns
rjitter Random Perturbation of a Point Pattern
spatialcdf Spatial Cumulative Distribution Function
rppm Recursively Partitioned Point Process Model
predict.mppm Prediction for Fitted Multiple Point Process Model
ripras Estimate window from points alone
summary.psp Summary of a Line Segment Pattern Dataset
summary.im Summarizing a Pixel Image
simplepanel Simple Point-and-Click Interface Panels
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
quantess Quantile Tessellation
quantile.density Quantiles of a Density Estimate
rtemper Simulated Annealing or Simulated Tempering for Gibbs Point Processes
rshift.psp Randomly Shift a Line Segment Pattern
rotate.im Rotate a Pixel Image
reach.dppm Range of Interaction for a Determinantal Point Process Model
residuals.ppm Residuals for Fitted Point Process Model
summary.ppp Summary of a Point Pattern Dataset
simplenet Simple Example of Linear Network
sharpen Data Sharpening of Point Pattern
rotate.ppp Rotate a Point Pattern
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
rotmean Rotational Average of a Pixel Image
rpoisline Generate Poisson Random Line Process
rHardcore Perfect Simulation of the Hardcore Process
reduced.sample Reduced Sample Estimator using Histogram Data
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
rescale Convert dataset to another unit of length
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
round.ppp Apply Numerical Rounding to Spatial Coordinates
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
rshift Random Shift
run.simplepanel Run Point-and-Click Interface
quadscheme.logi Generate a Logistic Regression Quadrature Scheme from a Point Pattern
split.hyperframe Divide Hyperframe Into Subsets and Reassemble
symbolmap Graphics Symbol Map
summary.quad Summarizing a Quadrature Scheme
rstrat Simulate Stratified Random Point Pattern
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
sidelengths.owin Side Lengths of Enclosing Rectangle of a Window
simulate.lppm Simulate a Fitted Point Process Model on a Linear Network
runifpointx Generate N Uniform Random Points in Any Dimensions
transmat Convert Pixel Array Between Different Conventions
scanpp Read Point Pattern From Data File
valid Check Whether Point Process Model is Valid
selfcrossing.psp Crossing Points in a Line Segment Pattern
rlinegrid Generate grid of parallel lines with random displacement
texturemap Texture Map
transect.im Pixel Values Along a Transect
rmpoint Generate N Random Multitype Points
summary.kppm Summarizing a Fitted Cox or Cluster Point Process Model
shapley Galaxies in the Shapley Supercluster
Extract.anylist Extract or Replace Subset of a List of Things
simulate.ppm Simulate a Fitted Gibbs Point Process Model
pool.rat Pool Data from Several Ratio Objects
update.rmhcontrol Update Control Parameters of Metropolis-Hastings Algorithm
shift.im Apply Vector Translation To Pixel Image
simulate.dppm Simulation of Determinantal Point Process Model
rescale.psp Convert Line Segment Pattern to Another Unit of Length
ppp.object Class of Point Patterns
superimpose Superimpose Several Geometric Patterns
rsyst Simulate systematic random point pattern
simdat Simulated Point Pattern
runiflpp Uniform Random Points on a Linear Network
Extract.leverage.ppm Extract Subset of Leverage Object
segregation.test Test of Spatial Segregation of Types
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
spatstat-deprecated Deprecated spatstat functions
thomas.estK Fit the Thomas Point Process by Minimum Contrast
rshift.ppp Randomly Shift a Point Pattern
stieltjes Compute Integral of Function Against Cumulative Distribution
scanLRTS Likelihood Ratio Test Statistic for Scan Test
scan.test Spatial Scan Test
spokes Spokes pattern of dummy points
vertices Vertices of a Window
trim.rectangle Cut margins from rectangle
scaletointerval Rescale Data to Lie Between Specified Limits
shift.owin Apply Vector Translation To Window
sessionLibs Print Names and Version Numbers of Libraries Loaded
treebranchlabels Label Vertices of a Tree by Branch Membership
shift.psp Apply Vector Translation To Line Segment Pattern
rpoislpp Poisson Point Process on a Linear Network
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
update.interact Update an Interpoint Interaction
rgbim Create Colour-Valued Pixel Image
runifdisc Generate N Uniform Random Points in a Disc
sporophores Sporophores Data
Emark Diagnostics for random marking
tile.areas Compute Areas of Tiles in a Tessellation
Extract.lpp Extract Subset of Point Pattern on Linear Network
predict.dppm Prediction from a Fitted Determinantal Point Process Model
shift Apply Vector Translation
Gfox Foxall's Distance Functions
waterstriders Waterstriders data. Three independent replications of a point pattern formed by insects.
unmark Remove Marks
spatstat-package The Spatstat Package
stienen Stienen Diagram
simulate.kppm Simulate a Fitted Cluster Point Process Model
update.kppm Update a Fitted Cluster Point Process Model
subset.hyperframe Subset of Hyperframe Satisfying A Condition
Fiksel The Fiksel Interaction
selfcut.psp Cut Line Segments Where They Intersect
spruces Spruces Point Pattern
Extract.listof Extract or Replace Subset of a List of Things
summary.listof Summary of a List of Things
with.msr Evaluate Expression Involving Components of a Measure
textureplot Plot Image or Tessellation Using Texture Fill
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
summary.anylist Summary of a List of Things
tess Create a Tessellation
unitname Name for Unit of Length
tweak.colourmap Change Colour Values in a Colour Map
subfits Extract List of Individual Point Process Models
spatstat.options Internal Options in Spatstat Package
Extract.owin Extract Subset of Window
Concom The Connected Component Process Model
pool.fv Pool Several Functions
plot.symbolmap Plot a Graphics Symbol Map
update.detpointprocfamily Set Parameter Values in a Determinantal Point Process Model
DiggleGratton Diggle-Gratton model
rmhexpand Specify Simulation Window or Expansion Rule
summary.solist Summary of a List of Spatial Objects
yardstick Text, Arrow or Scale Bar in a Diagram
union.quad Union of Data and Dummy Points
split.ppx Divide Multidimensional Point Pattern into Sub-patterns
Extract.hyperframe Extract or Replace Subset of Hyperframe
vcov.slrm Variance-Covariance Matrix for a Fitted Spatial Logistic Regression
zapsmall.im Rounding of Pixel Values
simplify.owin Approximate a Polygon by a Simpler Polygon
sumouter Compute Quadratic Forms
will.expand Test Expansion Rule
Extract.ppx Extract Subset of Multidimensional Point Pattern
Jdot Multitype J Function (i-to-any)
where.max Find Location of Maximum in a Pixel Image
superimpose.lpp Superimpose Several Point Patterns on Linear Network
quadscheme Generate a Quadrature Scheme from a Point Pattern
valid.detpointprocfamily Check Validity of a Determinantal Point Process Model
scalardilate Apply Scalar Dilation
simulate.mppm Simulate a Point Process Model Fitted to Several Point Patterns
HierHard The Hierarchical Hard Core Point Process Model
unnormdensity Weighted kernel smoother
vcov.mppm Calculate Variance-Covariance Matrix for Fitted Multiple Point Process Model
Hybrid Hybrid Interaction Point Process Model
vesicles Vesicles Data
Extract.layered Extract or Replace Subset of a Layered Object
spatstat-internal Internal spatstat functions
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
Hardcore The Hard Core Point Process Model
rMatClust Simulate Matern Cluster Process
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
split.ppp Divide Point Pattern into Sub-patterns
solist List of Two-Dimensional Spatial Objects
stratrand Stratified random point pattern
Extract.im Extract Subset of Image
varcount Predicted Variance of the Number of Points
studpermu.test Studentised Permutation Test
Gcom Model Compensator of Nearest Neighbour Function
Jmulti Marked J Function
timed Record the Computation Time
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
triangulate.owin Decompose Window into Triangles
summary.splitppp Summary of a Split Point Pattern
spiders Spider Webs on Mortar Lines of a Brick Wall
suffstat Sufficient Statistic of Point Process Model
Ord Generic Ord Interaction model
Extract.splitppp Extract or Replace Sub-Patterns
rlabel Random Re-Labelling of Point Pattern
K3est K-function of a Three-Dimensional Point Pattern
tilenames Names of Tiles in a Tessellation
Kdot.inhom Inhomogeneous Multitype K Dot Function
tiles.empty Check For Empty Tiles in a Tessellation
update.ppm Update a Fitted Point Process Model
thinNetwork Remove Vertices or Segments from a Linear Network
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
Kmeasure Reduced Second Moment Measure
addvar Added Variable Plot for Point Process Model
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
Extract.ppp Extract or Replace Subset of Point Pattern
whist Weighted Histogram
print.ppp Print Brief Details of a Point Pattern Dataset
swedishpines Swedish Pines Point Pattern
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
Math.im S3 Group Generic methods for images
BadGey Hybrid Geyer Point Process Model
Kmark Mark-Weighted K Function
LambertW Lambert's W Function
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
Kcom Model Compensator of K Function
MinkowskiSum Minkowski Sum of Windows
as.interact Extract Interaction Structure
volume Volume of an Object
Kmodel.dppm K-function or Pair Correlation Function of a Determinantal Point Process Model
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
Extract.psp Extract Subset of Line Segment Pattern
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
pseudoR2 Calculate Pseudo-R-Squared for Point Process Model
unique.ppp Extract Unique Points from a Spatial Point Pattern
WindowOnly Extract Window of Spatial Object
Kmodel.ppm K Function or Pair Correlation Function of Gibbs Point Process model
Ksector Sector K-function
waka Trees in Waka national park
Extract.influence.ppm Extract Subset of Influence Object
Smooth.msr Smooth a Signed or Vector-Valued Measure
as.linim Convert to Pixel Image on Linear Network
Kest K-function
Extract.fasp Extract Subset of Function Array
LennardJones The Lennard-Jones Potential
MultiHard The Multitype Hard Core Point Process Model
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
austates Australian States and Mainland Territories
treeprune Prune Tree to Given Level
as.data.frame.ppp Coerce Point Pattern to a Data Frame
summary.owin Summary of a Spatial Window
branchlabelfun Tree Branch Membership Labelling Function
Extract.linnet Extract Subset of Linear Network
border Border Region of a Window
anemones Beadlet Anemones Data
Kmodel.kppm K Function or Pair Correlation Function of Cluster Model or Cox model
simba Simulated data from a two-group experiment with replication within each group.
as.matrix.owin Convert Pixel Image to Matrix
Pairwise Generic Pairwise Interaction model
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
as.box3 Convert Data to Three-Dimensional Box
HierStrauss The Hierarchical Strauss Point Process Model
Hest Spherical Contact Distribution Function
Lcross.inhom Inhomogeneous Cross Type L Function
Kres Residual K Function
Frame Extract or Change the Containing Rectangle of a Spatial Object
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
anova.mppm ANOVA for Fitted Point Process Models for Replicated Patterns
rQuasi Generate Quasirandom Point Pattern in Given Window
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
areaGain Difference of Disc Areas
Extract.tess Extract or Replace Subset of Tessellation
urkiola Urkiola Woods Point Pattern
tiles Extract List of Tiles in a Tessellation
as.fv Convert Data To Class fv
rescue.rectangle Convert Window Back To Rectangle
zclustermodel Cluster Point Process Model
Gres Residual G Function
applynbd Apply Function to Every Neighbourhood in a Point Pattern
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
affine.ppp Apply Affine Transformation To Point Pattern
Window Extract or Change the Window of a Spatial Object
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
Poisson Poisson Point Process Model
setcov Set Covariance of a Window
FmultiInhom Inhomogeneous Marked F-Function
Smooth.ppp Spatial smoothing of observations at irregular points
auc Area Under ROC Curve
Ldot.inhom Inhomogeneous Multitype L Dot Function
split.im Divide Image Into Sub-images
as.data.frame.im Convert Pixel Image to Data Frame
compatible.im Test Whether Pixel Images Are Compatible
Ldot Multitype L-function (i-to-any)
cdf.test Spatial Distribution Test for Point Pattern or Point Process Model
Finhom Inhomogeneous Empty Space Function
circdensity Density Estimation for Circular Data
Geyer Geyer's Saturation Point Process Model
GmultiInhom Inhomogeneous Marked G-Function
compatible Test Whether Objects Are Compatible
Saturated Saturated Pairwise Interaction model
area.owin Area of a Window
Jest Estimate the J-function
as.data.frame.owin Convert Window to Data Frame
Jcross Multitype J Function (i-to-j)
bei Tropical rain forest trees
affine.owin Apply Affine Transformation To Window
bdist.tiles Distance to Boundary of Window
Extract.quad Subset of Quadrature Scheme
as.polygonal Convert a Window to a Polygonal Window
affine Apply Affine Transformation
as.function.im Convert Pixel Image to Function of Coordinates
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
StraussHard The Strauss / Hard Core Point Process Model
Kcross Multitype K Function (Cross-type)
Iest Estimate the I-function
diameter.box3 Geometrical Calculations for Three-Dimensional Box
Kest.fft K-function using FFT
rotate.owin Rotate a Window
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
berman.test Berman's Tests for Point Process Model
chorley Chorley-Ribble Cancer Data
affine.linnet Apply Geometrical Transformations to a Linear Network
Lest L-function
Jinhom Inhomogeneous J-function
Penttinen Penttinen Interaction
as.tess Convert Data To Tessellation
Tstat Third order summary statistic
data.ppm Extract Original Data from a Fitted Point Process Model
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
as.function.fv Convert Function Value Table to Function
as.hyperframe Convert Data to Hyperframe
HierStraussHard The Hierarchical Strauss Hard Core Point Process Model
bronzefilter Bronze gradient filter data
closepairs Close Pairs of Points
as.im Convert to Pixel Image
clusterfield Field of clusters
as.linnet.psp Convert Line Segment Pattern to Linear Network
as.layered Convert Data To Layered Object
Kcross.inhom Inhomogeneous Cross K Function
cells Biological Cells Point Pattern
as.lpp Convert Data to a Point Pattern on a Linear Network
rpoislinetess Poisson Line Tessellation
boundingbox Bounding Box of a Window, Image, or Point Pattern
summary.ppm Summarizing a Fitted Point Process Model
closing Morphological Closing
dclf.sigtrace Significance Trace of Cressie-Loosmore-Ford or Maximum Absolute Deviation Test
Kdot Multitype K Function (i-to-any)
rpoisppx Generate Poisson Point Pattern in Any Dimensions
triplet.family Triplet Interaction Family
Ginhom Inhomogeneous Nearest Neighbour Function
blur Apply Gaussian Blur to a Pixel Image
append.psp Combine Two Line Segment Patterns
cut.im Convert Pixel Image from Numeric to Factor
runifpoint Generate N Uniform Random Points
affine.im Apply Affine Transformation To Pixel Image
update.symbolmap Update a Graphics Symbol Map.
closepairs.pp3 Close Pairs of Points in 3 Dimensions
bounding.box.xy Convex Hull of Points
Kinhom Inhomogeneous K-function
runifpoint3 Generate N Uniform Random Points in Three Dimensions
by.im Apply Function to Image Broken Down by Factor
discpartarea Area of Part of Disc
Kovesi Colour Sequences with Uniform Perceptual Contrast
anylist List of Objects
Kmulti.inhom Inhomogeneous Marked K-Function
convexhull Convex Hull
contour.imlist Array of Contour Plots
compatible.fv Test Whether Function Objects Are Compatible
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
Kmodel K Function or Pair Correlation Function of a Point Process Model
Math.linim S3 Group Generic Methods for Images on a Linear Network
collapse.fv Collapse Several Function Tables into One
varblock Estimate Variance of Summary Statistic by Subdivision
as.psp Convert Data To Class psp
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
Kmulti Marked K-Function
edge.Ripley Ripley's Isotropic Edge Correction
circumradius Circumradius of a Window
divide.linnet Divide Linear Network at Cut Points
amacrine Hughes' Amacrine Cell Data
connected.linnet Connected Components of a Linear Network
copyExampleFiles Copy Data Files for Example
Kscaled Locally Scaled K-function
complement.owin Take Complement of a Window
cbind.hyperframe Combine Hyperframes by Rows or by Columns
fitted.lppm Fitted Intensity for Point Process on Linear Network
bdspots Breakdown Spots in Microelectronic Materials
distmap.ppp Distance Map of Point Pattern
chicago Chicago Street Crime Data
clickjoin Interactively join vertices on a plot
bind.fv Combine Function Value Tables
diameter.owin Diameter of a Window
dg.progress Progress Plot of Dao-Genton Test of Spatial Pattern
discretise Safely Convert Point Pattern Window to Binary Mask
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
affine.psp Apply Affine Transformation To Line Segment Pattern
contour.im Contour plot of pixel image
beginner Print Introduction For Beginners
chop.tess Subdivide a Window or Tessellation using a Set of Lines
clusterset Allard-Fraley Estimator of Cluster Feature
edge.Trans Translation Edge Correction
solapply Apply a Function Over a List and Obtain a List of Objects
crossing.psp Crossing Points of Two Line Segment Patterns
allstats Calculate four standard summary functions of a point pattern.
Smooth Spatial smoothing of data
corners Corners of a rectangle
anova.ppm ANOVA for Fitted Point Process Models
clickbox Interactively Define a Rectangle
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
crossdist.ppp Pairwise distances between two different point patterns
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
grow.rectangle Add margins to rectangle
as.boxx Convert Data to Multi-Dimensional Box
betacells Beta Ganglion Cells in Cat Retina
distmap.owin Distance Map of Window
demopat Artificial Data Point Pattern
Triplets The Triplet Point Process Model
dmixpois Mixed Poisson Distribution
edges Extract Boundary Edges of a Window.
bw.frac Bandwidth Selection Based on Window Geometry
as.linnet.linim Extract Linear Network from Data on a Linear Network
square Square Window
as.ppp Convert Data To Class ppp
detpointprocfamilyfun Construct a New Determinantal Point Process Model Family Function
domain Extract the Domain of any Spatial Object
boxx Multi-Dimensional Box
Softcore The Soft Core Point Process Model
tileindex Determine Which Tile Contains Each Given Point
angles.psp Orientation Angles of Line Segments
OrdThresh Ord's Interaction model
affine.lpp Apply Geometrical Transformations to Point Pattern on a Linear Network
dclf.test Diggle-Cressie-Loosmore-Ford and Maximum Absolute Deviation Tests
valid.ppm Check Whether Point Process Model is Valid
foo Foo is Not a Real Name
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
box3 Three-Dimensional Box
dfbetas.ppm Parameter influence measure
flu Influenza Virus Proteins
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
default.dummy Generate a Default Pattern of Dummy Points
delaunay Delaunay Triangulation of Point Pattern
PPversion Transform a Function into its P-P or Q-Q Version
Extract.solist Extract or Replace Subset of a List of Spatial Objest
density.ppp Kernel Smoothed Intensity of Point Pattern
as.linfun Convert Data to a Function on a Linear Network
Smoothfun.ppp Smooth Interpolation of Marks as a Spatial Function
funxy Spatial Function Class
clmfires Castilla-La Mancha Forest Fires
clusterfit Fit Cluster or Cox Point Process Model via Minimum Contrast
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
infline Infinite Straight Lines
distfun.lpp Distance Map on Linear Network
copper Berman-Huntington points and lines data
clip.infline Intersect Infinite Straight Lines with a Window
diameter.linnet Circumradius and Diameter of a Linear Network
ants Harkness-Isham ants' nests data
ewcdf Weighted Empirical Cumulative Distribution Function
concatxy Concatenate x,y Coordinate Vectors
eval.im Evaluate Expression Involving Pixel Images
clusterradius Compute or Extract Effective Range of Cluster Kernel
commonGrid Determine A Common Spatial Domain And Pixel Resolution
cdf.test.mppm Spatial Distribution Test for Multiple Point Process Model
centroid.owin Centroid of a window
bdist.pixels Distance to Boundary of Window
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
eroded.areas Areas of Morphological Erosions
as.ppm Extract Fitted Point Process Model
harmonise.im Make Pixel Images Compatible
gridcentres Rectangular grid of points
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
dirichlet Dirichlet Tessellation of Point Pattern
dppGauss Gaussian Determinantal Point Process Model
fasp.object Function Arrays for Spatial Patterns
bw.ppl Likelihood Cross Validation Bandwidth Selection for Kernel Density
clusterkernel Extract Cluster Offspring Kernel
formula.fv Extract or Change the Plot Formula for a Function Value Table
density.psp Kernel Smoothing of Line Segment Pattern
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
lengths.psp Lengths of Line Segments
crossdist Pairwise distances
with.fv Evaluate an Expression in a Function Table
coef.mppm Coefficients of Point Process Model Fitted to Multiple Point Patterns
colourmap Colour Lookup Tables
density.lpp Kernel Estimate of Intensity on a Linear Network
dg.envelope Global Envelopes for Dao-Genton Test
diameter Diameter of an Object
exactMPLEstrauss Exact Maximum Pseudolikelihood Estimate for Stationary Strauss Process
linearKdot.inhom Inhomogeneous multitype K Function (Dot-type) for Linear Point Pattern
dim.detpointprocfamily Dimension of Determinantal Point Process Model
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
fitin.ppm Extract the Interaction from a Fitted Point Process Model
crossdist.default Pairwise distances between two different sets of points
CDF Cumulative Distribution Function From Kernel Density Estimate
distcdf Distribution Function of Interpoint Distance
covering Cover Region with Discs
linearpcfdot Multitype Pair Correlation Function (Dot-type) for Linear Point Pattern
dppkernel Extract Kernel from Determinantal Point Process Model Object
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
areaLoss Difference of Disc Areas
formula.ppm Model Formulae for Gibbs Point Process Models
AreaInter The Area Interaction Point Process Model
dppapproxkernel Approximate Determinantal Point Process Kernel
disc Circular Window
bramblecanes Hutchings' Bramble Canes data
as.owin Convert Data To Class owin
dirichletAreas Compute Areas of Tiles in Dirichlet Tessellation
dppspecden Extract Spectral Density from Determinantal Point Process Model Object
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
is.marked.ppp Test Whether A Point Pattern is Marked
dilation Morphological Dilation
discs Union of Discs
deriv.fv Calculate Derivative of Function Values
clickpoly Interactively Define a Polygon
eem Exponential Energy Marks
Extract.fv Extract or Replace Subset of Function Values
deltametric Delta Metric
logLik.ppm Log Likelihood and AIC for Point Process Model
is.owin Test Whether An Object Is A Window
deletebranch Delete or Extract a Branch of a Tree
dppMatern Whittle-Matern Determinantal Point Process Model
dummify Convert Data to Numeric Values by Constructing Dummy Variables
hyperframe Hyper Data Frame
distmap Distance Map
identify.ppp Identify Points in a Point Pattern
dppeigen Internal function calculating eig and index
Lcross Multitype L-function (cross-type)
dirichletWeights Compute Quadrature Weights Based on Dirichlet Tessellation
harmonise Make Objects Compatible
convexify Weil's Convexifying Operation
crossdist.lpp Pairwise distances between two point patterns on a linear network
as.function.tess Convert a Tessellation to a Function
Replace.im Reset Values in Subset of Image
flipxy Exchange X and Y Coordinates
connected.ppp Connected Components of a Point Pattern
affine.tess Apply Geometrical Transformation To Tessellation
demohyper Demonstration Example of Hyperframe of Spatial Data
dppCauchy Generalized Cauchy Determinantal Point Process Model
fourierbasis Fourier Basis Functions
as.solist Convert List of Two-Dimensional Spatial Objects
logLik.mppm Log Likelihood and AIC for Multiple Point Process Model
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
msr Signed or Vector-Valued Measure
dppspecdenrange Range of Spectral Density of a Determinantal Point Process Model
endpoints.psp Endpoints of Line Segment Pattern
laslett Laslett's Transform
linearKinhom Inhomogeneous Linear K Function
crossdist.psp Pairwise distances between two different line segment patterns
is.stationary Recognise Stationary and Poisson Point Process Models
hierpair.family Hierarchical Pairwise Interaction Process Family
envelope.lpp Envelope for Point Patterns on Linear Network
begins Check Start of Character String
fitted.ppm Fitted Conditional Intensity for Point Process Model
compareFit Residual Diagnostics for Multiple Fitted Models
envelope.envelope Recompute Envelopes
integral.linim Integral on a Linear Network
integral.msr Integral of a Measure
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
dclf.progress Progress Plot of Test of Spatial Pattern
intersect.owin Intersection, Union or Set Subtraction of Windows
compatible.fasp Test Whether Function Arrays Are Compatible
fv.object Function Value Table
bdist.points Distance to Boundary of Window
edges2vees List Dihedral Triples in a Graph
F3est Empty Space Function of a Three-Dimensional Point Pattern
Extract.msr Extract Subset of Signed or Vector Measure
default.expand Default Expansion Rule for Simulation of Model
fitted.mppm Fitted Conditional Intensity for Multiple Point Process Model
is.dppm Recognise Fitted Determinantal Point Process Models
fv Create a Function Value Table
dkernel Kernel distributions and random generation
dg.test Dao-Genton Adjusted Goodness-Of-Fit Test
is.empty Test Whether An Object Is Empty
lppm Fit Point Process Model to Point Pattern on Linear Network
dilated.areas Areas of Morphological Dilations
delaunayDistance Distance on Delaunay Triangulation
ellipse Elliptical Window.
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
Fest Estimate the Empty Space Function or its Hazard Rate
edit.ppp Invoke Text Editor on Spatial Data
is.convex Test Whether a Window is Convex
letterR Window in Shape of Letter R
linearpcf Linear Pair Correlation Function
hopskel Hopkins-Skellam Test
hextess Hexagonal Grid or Tessellation
edit.hyperframe Invoke Text Editor on Hyperframe
interp.colourmap Interpolate smoothly between specified colours
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
is.subset.owin Determine Whether One Window is Contained In Another
distfun Distance Map as a Function
gorillas Gorilla Nesting Sites
gordon People in Gordon Square
is.marked Test Whether Marks Are Present
erosion Morphological Erosion by a Disc
delaunayNetwork Linear Network of Delaunay Triangulation or Dirichlet Tessellation
eval.fasp Evaluate Expression Involving Function Arrays
inside.boxx Test Whether Points Are Inside A Multidimensional Box
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
plot.linim Plot Pixel Image on Linear Network
fvnames Abbreviations for Groups of Columns in Function Value Table
layout.boxes Generate a Row or Column Arrangement of Rectangles.
Gmulti Marked Nearest Neighbour Distance Function
dppapproxpcf Approximate Pair Correlation Function of Determinantal Point Process Model
as.matrix.im Convert Pixel Image to Matrix or Array
layerplotargs Extract or Replace the Plot Arguments of a Layered Object
plot.quad Plot a Spatial Quadrature Scheme
expand.owin Apply Expansion Rule
model.depends Identify Covariates Involved in each Model Term
kernel.moment Moment of Smoothing Kernel
hist.im Histogram of Pixel Values in an Image
coef.ppm Coefficients of Fitted Point Process Model
clarkevans.test Clark and Evans Test
fixef.mppm Extract Fixed Effects from Point Process Model
linearpcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Dot-type) for Linear Point Pattern
harmonise.owin Make Windows Compatible
is.multitype.ppp Test Whether A Point Pattern is Multitype
im Create a Pixel Image Object
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
methods.pp3 Methods for three-dimensional point patterns
leverage.ppm Leverage Measure for Spatial Point Process Model
linnet Create a Linear Network
inforder.family Infinite Order Interaction Family
hybrid.family Hybrid Interaction Family
methods.lppm Methods for Fitted Point Process Models on a Linear Network
mincontrast Method of Minimum Contrast
as.rectangle Window Frame
heather Diggle's Heather Data
nndensity.ppp Estimate Intensity of Point Pattern Using Nearest Neighbour Distances
intensity.lpp Empirical Intensity of Point Pattern on Linear Network
layered Create List of Plotting Layers
ord.family Ord Interaction Process Family
incircle Find Largest Circle Inside Window
linearKcross.inhom Inhomogeneous multitype K Function (Cross-type) for Linear Point Pattern
influence.ppm Influence Measure for Spatial Point Process Model
methods.kppm Methods for Cluster Point Process Models
emend Force Model to be Valid
integral.im Integral of a Pixel Image
midpoints.psp Midpoints of Line Segment Pattern
im.object Class of Images
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
lpp Create Point Pattern on Linear Network
model.matrix.slrm Extract Design Matrix from Spatial Logistic Regression Model
localKinhom Inhomogeneous Neighbourhood Density Function
intensity.ppm Intensity of Fitted Point Process Model
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
hyytiala Scots pines and other trees at Hyytiala
increment.fv Increments of a Function
dirichletVertices Vertices and Edges of Dirichlet Tessellation
dppBessel Bessel Type Determinantal Point Process Model
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
pairdist.pp3 Pairwise distances in Three Dimensions
dppPowerExp Power Exponential Spectral Determinantal Point Process Model
nncross.pp3 Nearest Neighbours Between Two Patterns in 3D
clickdist Interactively Measure Distance
intensity.quadratcount Intensity Estimates Using Quadrat Counts
edges2triangles List Triangles in a Graph
hamster Aherne's hamster tumour data
localK Neighbourhood density function
insertVertices Insert New Vertices in a Linear Network
npfun Dummy Function Returns Number of Points
kaplan.meier Kaplan-Meier Estimator using Histogram Data
nncross.lpp Nearest Neighbours on a Linear Network
pairdist.default Pairwise distances
im.apply Apply Function Pixelwise to List of Images
fryplot Fry Plot of Point Pattern
Gest Nearest Neighbour Distance Function G
markconnect Mark Connection Function
emend.ppm Force Point Process Model to be Valid
is.marked.ppm Test Whether A Point Process Model is Marked
Linhom L-function
invoke.symbolmap Plot Data Using Graphics Symbol Map
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
as.mask Pixel Image Approximation of a Window
plot.envelope Plot a Simulation Envelope
interp.im Interpolate a Pixel Image
markcorr Mark Correlation Function
lohboot Bootstrap Confidence Bands for Summary Function
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
dppm Fit Determinantal Point Process Model
pairdist.ppp Pairwise distances
envelope Simulation Envelopes of Summary Function
is.ppm Test Whether An Object Is A Fitted Point Process Model
markvario Mark Variogram
nsegments Number of Line Segments in a Line Segment Pattern
istat Point and Click Interface for Exploratory Analysis of Point Pattern
Smooth.fv Apply Smoothing to Function Values
harmonise.fv Make Function Tables Compatible
ippm Fit Point Process Model Involving Irregular Trend Parameters
is.multitype.ppm Test Whether A Point Process Model is Multitype
mergeLevels Merge Levels of a Factor
logLik.kppm Log Likelihood and AIC for Fitted Cox or Cluster Point Process Model
intensity.ppp Empirical Intensity of Point Pattern
eval.linim Evaluate Expression Involving Pixel Images on Linear Network
methods.linim Methods for Images on a Linear Network
add.texture Fill Plot With Texture
iplot Point and Click Interface for Displaying Spatial Data
improve.kppm Improve Intensity Estimate of Fitted Cluster Point Process Model
perspPoints Draw Points or Lines on a Surface Viewed in Perspective
plot.lpp Plot Point Pattern on Linear Network
lansing Lansing Woods Point Pattern
is.ppp Test Whether An Object Is A Point Pattern
pairdist Pairwise distances
methods.linnet Methods for Linear Networks
kernel.factor Scale factor for density kernel
linearpcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-type) for Linear Point Pattern
linearKdot Multitype K Function (Dot-type) for Linear Point Pattern
is.multitype Test whether Object is Multitype
lineardisc Compute Disc of Given Radius in Linear Network
methods.lpp Methods for Point Patterns on a Linear Network
linearmarkconnect Mark Connection Function for Multitype Point Pattern on Linear Network
nestsplit Nested Split
humberside Humberside Data on Childhood Leukaemia and Lymphoma
murchison Murchison gold deposits
intensity.ppx Intensity of a Multidimensional Space-Time Point Pattern
latest.news Print News About Latest Version of Package
kppm Fit Cluster or Cox Point Process Model
model.matrix.ppm Extract Design Matrix from Point Process Model
marks.tess Marks of a Tessellation
plot.quadratcount Plot Quadrat Counts
linearpcfcross Multitype Pair Correlation Function (Cross-type) for Linear Point Pattern
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
levelset Level Set of a Pixel Image
owin Create a Window
lintess Tessellation on a Linear Network
identify.psp Identify Segments in a Line Segment Pattern
is.hybrid Test Whether Object is a Hybrid
linearmarkequal Mark Connection Function for Multitype Point Pattern on Linear Network
MultiStrauss The Multitype Strauss Point Process Model
methods.layered Methods for Layered Objects
beachcolours Create Colour Scheme for a Range of Numbers
methods.boxx Methods for Multi-Dimensional Box
nearest.raster.point Find Pixel Nearest to a Given Point
pairdist.psp Pairwise distances between line segments
japanesepines Japanese Pines Point Pattern
methods.objsurf Methods for Objective Function Surfaces
marks Marks of a Point Pattern
marks.psp Marks of a Line Segment Pattern
linim Create Pixel Image on Linear Network
compileK Generic Calculation of K Function and Pair Correlation Function
plot.fasp Plot a Function Array
lixellate Subdivide Segments of a Network
periodify Make Periodic Copies of a Spatial Pattern
pcf Pair Correlation Function
parameters Extract Model Parameters in Understandable Form
methods.box3 Methods for Three-Dimensional Box
dendrite Dendritic Spines Data
logLik.dppm Log Likelihood and AIC for Fitted Determinantal Point Process Model
convexhull.xy Convex Hull of Points
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
nndist.pp3 Nearest neighbour distances in three dimensions
plot.imlist Plot a List of Images
lurking Lurking variable plot
opening Morphological Opening
plot.owin Plot a Spatial Window
convolve.im Convolution of Pixel Images
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
owin.object Class owin
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
is.lpp Test Whether An Object Is A Point Pattern on a Linear Network
longleaf Longleaf Pines Point Pattern
plot.bermantest Plot Result of Berman Test
plot.hyperframe Plot Entries in a Hyperframe
methods.linfun Methods for Functions on Linear Network
mppm Fit Point Process Model to Several Point Patterns
perimeter Perimeter Length of Window
methods.ppx Methods for Multidimensional Space-Time Point Patterns
colourtools Convert and Compare Colours in Different Formats
mucosa Cells in Gastric Mucosa
methods.slrm Methods for Spatial Logistic Regression Models
nnwhich Nearest neighbour
persp.im Perspective Plot of Pixel Image
methods.rhohat Methods for Intensity Functions of Spatial Covariate
connected Connected components
plot.plotppm Plot a plotppm Object Created by plot.ppm
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
moribund Outdated Functions
plot.quadrattest Display the result of a quadrat counting test.
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
plot.anylist Plot a List of Things
plot.onearrow Plot an Arrow
pairdist.lpp Pairwise shortest-path distances between points on a linear network
matchingdist Distance for a Point Pattern Matching
pairdist.ppx Pairwise Distances in Any Dimensions
maxnndist Compute Minimum or Maximum Nearest-Neighbour Distance
linearKcross Multitype K Function (Cross-type) for Linear Point Pattern
methods.units Methods for Units
pcfdot Multitype pair correlation function (i-to-any)
clarkevans Clark and Evans Aggregation Index
pairs.im Scatterplot Matrix for Pixel Images
Strauss The Strauss Point Process Model
model.images Compute Images of Constructed Covariates
clickppp Interactively Add Points
linearK Linear K Function
linfun Function on a Linear Network
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
methods.funxy Methods for Spatial Functions
lut Lookup Tables
nndist Nearest neighbour distances
pixellate Convert Spatial Object to Pixel Image
model.frame.ppm Extract the Variables in a Point Process Model
panel.contour Panel Plots using Colour Image or Contour Lines
pairorient Point Pair Orientation Distribution
nnwhich.ppx Nearest Neighbours in Any Dimensions
nnmark Mark of Nearest Neighbour
eval.fv Evaluate Expression Involving Functions
erosionAny Morphological Erosion of Windows
nnfun.lpp Nearest Neighbour Map on Linear Network
nnwhich.lpp Identify Nearest Neighbours on a Linear Network
nnorient Nearest Neighbour Orientation Distribution
ganglia Beta Ganglion Cells in Cat Retina, Old Version
nnwhich.pp3 Nearest neighbours in three dimensions
plot.rppm Plot a Recursively Partitioned Point Process Model
plot.leverage.ppm Plot Leverage Function
nobjects Count Number of Geometrical Objects in a Spatial Dataset
nndist.lpp Nearest neighbour distances on a linear network
nnmap K-th Nearest Point Map
plot.influence.ppm Plot Influence Measure
nndist.psp Nearest neighbour distances between line segments
miplot Morisita Index Plot
nbfires Point Patterns of New Brunswick Forest Fires
harmonic Basis for Harmonic Functions
nztrees New Zealand Trees Point Pattern
nearestsegment Find Line Segment Nearest to Each Point
pixellate.ppp Convert Point Pattern to Pixel Image
npoints Number of Points in a Point Pattern
padimage Pad the Border of a Pixel Image
fardist Farthest Distance to Boundary of Window
pairsat.family Saturated Pairwise Interaction Point Process Family
nnfun Nearest Neighbour Index Map as a Function
imcov Spatial Covariance of a Pixel Image
intensity.dppm Intensity of Determinantal Point Process Model
pcf.ppp Pair Correlation Function of Point Pattern
pcfinhom Inhomogeneous Pair Correlation Function
plot.msr Plot a Signed or Vector-Valued Measure
pcfcross Multitype pair correlation function (cross-type)
dg.sigtrace Significance Trace of Dao-Genton Test
methods.zclustermodel Methods for Cluster Models
plot.slrm Plot a Fitted Spatial Logistic Regression
idw Inverse-distance weighted smoothing of observations at irregular points
plot.cdftest Plot a Spatial Distribution Test
pairwise.family Pairwise Interaction Process Family
plot.im Plot a Pixel Image
distmap.psp Distance Map of Line Segment Pattern
nncross Nearest Neighbours Between Two Patterns
parres Partial Residuals for Point Process Model
plot.lppm Plot a Fitted Point Process Model on a Linear Network
paracou Kimboto trees at Paracou, French Guiana
is.rectangle Determine Type of Window
plot.scan.test Plot Result of Scan Test
markcrosscorr Mark Cross-Correlation Function
dppparbounds Parameter Bound for a Determinantal Point Process Model
pixellate.psp Convert Line Segment Pattern to Pixel Image
plot.dppm Plot a fitted determinantal point process
grow.boxx Add margins to box in any dimension
pixelquad Quadrature Scheme Based on Pixel Grid
pcf.fv Pair Correlation Function obtained from K Function
plot.listof Plot a List of Things
plot.laslett Plot Laslett Transform
finpines Pine saplings in Finland.
nndist.ppx Nearest Neighbour Distances in Any Dimensions
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
plot.ppm plot a Fitted Point Process Model
plot.linnet Plot a linear network
plot.colourmap Plot a Colour Map
plot.layered Layered Plot
plot.psp plot a Spatial Line Segment Pattern
localpcf Local pair correlation function
logLik.slrm Loglikelihood of Spatial Logistic Regression
pixellate.owin Convert Window to Pixel Image
methods.dppm Methods for Determinantal Point Process Models
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
pixelcentres Extract Pixel Centres as Point Pattern
nnclean Nearest Neighbour Clutter Removal
gridweights Compute Quadrature Weights Based on Grid Counts
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
gauss.hermite Gauss-Hermite Quadrature Approximation to Expectation for Normal Distribution
plot.pp3 Plot a Three-Dimensional Point Pattern
intensity Intensity of a Dataset or a Model
overlap.owin Compute Area of Overlap
objsurf Objective Function Surface
intersect.tess Intersection of Two Tessellations
inside.owin Test Whether Points Are Inside A Window
plot.fv Plot Function Values
plot.ppp plot a Spatial Point Pattern
is.im Test Whether An Object Is A Pixel Image
pcfmulti Marked pair correlation function
cut.ppp Classify Points in a Point Pattern
plot.mppm plot a Fitted Multiple Point Process Model
methods.fii Methods for Fitted Interactions
multiplicity.ppp Count Multiplicity of Duplicate Points
nvertices Count Number of Vertices
pcf.fasp Pair Correlation Function obtained from array of K functions
plot.kppm Plot a fitted cluster point process
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Nickname Caretaker Mode
Date 2016-05-09
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
NeedsCompilation yes
ByteCompile true
BugReports https://github.com/spatstat/spatstat/issues
Packaged 2016-05-09 04:35:04 UTC; adrian
Repository CRAN
Date/Publication 2016-05-09 10:08:26
imports abind , deldir (>= 0.0-21) , goftest , Matrix , mgcv , polyclip (>= 1.5-0) , tensor
depends base (>= 3.2.2) , graphics , grDevices , methods , nlme , R (>= 3.2.2) , rpart , stats , utils
suggests gsl , locfit , maptools , RandomFields (>= 3.0.0) , rpanel , sm , spatial , tkrplot
Contributors Adrian Baddeley, Rolf Turner, Ege Rubak

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