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spatsurv (version 0.9-11)

Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models

Description

Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models.

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Version

Install

install.packages('spatsurv')

Monthly Downloads

803

Version

0.9-11

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

October 21st, 2015

Functions in spatsurv (0.9-11)

YFromGamma_SPDE

YFromGamma_SPDE function

GammafromY function

hazardexceedance

hazardexceedance function

exponentialHaz function

getsurvdata function

inference.control

inference.control function

cumulativeBspline.construct

cumulativeBspline.construct function

checkSurvivalData

checkSurvivalData function

gradbasehazard.basehazardspec

gradbasehazard.basehazardspec function

getBackground function

guess_t function

London Fire Brigade property

London Fire Brigade response times to dwelling fires, 2009

grid2spts function

weibullHaz function

getBbasis function

EvalCov function

ExponentialCovFct

ExponentialCovFct function

do we retain this iteration?

SpikedExponentialCovFct

SpikedExponentialCovFct function

Bspline.construct

Bspline.construct function

logPosterior_gridded

logPosterior_gridded function

invtransformweibull

invtransformweibull function

basehazard function

CSplot function

maxlikparamPHsurv

maxlikparamPHsurv function

logPosterior_polygonal

logPosterior_polygonal function

circulant function

densityquantile.basehazardspec

densityquantile.basehazardspec function

hazard_PP function

basehazard.basehazardspec

basehazard.basehazardspec function

summary.mcmc function

distinfo.basehazardspec

distinfo.basehazardspec function

SPDEprec function

densityquantile

densityquantile function

baselinehazard function

density_PP function

getparranges function

iterator for MCMC loops

fixmatrix function

getleneta function

indepGaussianprior

indepGaussianprior function

print.mlspatsurv

print.mlspatsurv function

covmodel function

summary.mcmcspatsurv

summary.mcmcspatsurv function

loop over an iterator

setupHazard function

urlTemplate function

hesscumbasehazard

hesscumbasehazard function

YfromGamma function

mcmcProgressTextBar

text bar progress monitor

distinfo function

mcmcProgressPrint

printing progress monitor

simsurv function

circulant.matrix

circulant.matrix function

getcov function

quantile.mcmcspatsurv

quantile.mcmcspatsurv function

gompertzHaz function

fixedpars function

mcmcProgressNone

null progress monitor

reconstruct.bs function

cumbasehazard function

gradbasehazard function

proposalVariance_gridded

proposalVariance_gridded function

gencens function

getOptCellwidth

getOptCellwidth function

proposalVariance

proposalVariance function

survspat function

mcmcPriors function

gridY_polygonal

gridY_polygonal function

circulant.numeric

circulant.numeric function

hasNext.iter function

print.mcmc function

quantile.mlspatsurv

quantile.mlspatsurv function

randompars function

neighLocs function

vcov.mcmcspatsurv

vcov.mcmcspatsurv function

is this a burn-in iteration?

omegapriorGauss

omegapriorGauss function

tpowHaz function

grid2spix function

survival_PP function

QuadApprox function

logPosterior_SPDE

logPosterior_SPDE function

makehamHaz function

hazardpars function

hesscumbasehazard.basehazardspec

hesscumbasehazard.basehazardspec function

Spatial Survival Plot in 3D

FFTgrid function

frailtylag1 function

circulantij function

spplot1 function

print.mcmcspatsurv

print.mcmcspatsurv function

betapriorGauss function

generic hasNext method

GammaFromY_SPDE

GammaFromY_SPDE function

grid2spdf function

densityquantile_PP

densityquantile_PP function

survspatNS function

mcmcpars function

vcov.mlspatsurv

vcov.mlspatsurv function

etapriorGauss function

priorposterior function

spatsurv-package

polyadd function

midpts function

next step of an MCMC chain

gradcumbasehazard

gradcumbasehazard function

setTxtProgressBar2

set the progress bar

gradcumbasehazard.basehazardspec

gradcumbasehazard.basehazardspec function

residuals.mcmcspatsurv

resuiduals.mcmcspatsurv function

setupPrecMatStruct

setupPrecMatStruct function

spatialpars function

showGrid function

hessbasehazard.basehazardspec

hessbasehazard.basehazardspec function

logPosterior function

posteriorcov function

NonSpatialLogLikelihood_or_gradient

NonSpatialLogLikelihood_or_gradient function

derivindepGaussianprior

derivindepGaussianprior function

proposalVariance_polygonal

proposalVariance_polygonal function

predict.mcmcspatsurv

predict.mcmcspatsurv function

Summarise function

polymult function

transformweibull

transformweibull function

plotsurv function

print.textSummary

print.textSummary function

BsplineHaz function

proposalVariance_SPDE

proposalVariance_SPDE function

estimateY function

neighOrder function

textSummary function

getgrd function

getGrid function

txtProgressBar2

A text progress bar with label

spatsurvVignette

spatsurvVignette function

iteration number

allocate function

cumbasehazard.basehazardspec

cumbasehazard.basehazardspec function

hessbasehazard function

spplot_compare function