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spatsurv (version 0.9-11)
Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models
Description
Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models.
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Install
install.packages('spatsurv')
Monthly Downloads
894
Version
0.9-11
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
October 21st, 2015
Functions in spatsurv (0.9-11)
Search functions
YFromGamma_SPDE
YFromGamma_SPDE function
GammafromY
GammafromY function
hazardexceedance
hazardexceedance function
exponentialHaz
exponentialHaz function
getsurvdata
getsurvdata function
inference.control
inference.control function
cumulativeBspline.construct
cumulativeBspline.construct function
checkSurvivalData
checkSurvivalData function
gradbasehazard.basehazardspec
gradbasehazard.basehazardspec function
getBackground
getBackground function
guess_t
guess_t function
fs
London Fire Brigade property
fstimes
London Fire Brigade response times to dwelling fires, 2009
grid2spts
grid2spts function
weibullHaz
weibullHaz function
gridY
gridY function
getBbasis
getBbasis function
EvalCov
EvalCov function
ExponentialCovFct
ExponentialCovFct function
is.retain
do we retain this iteration?
SpikedExponentialCovFct
SpikedExponentialCovFct function
Bspline.construct
Bspline.construct function
logPosterior_gridded
logPosterior_gridded function
invtransformweibull
invtransformweibull function
basehazard
basehazard function
CSplot
CSplot function
maxlikparamPHsurv
maxlikparamPHsurv function
logPosterior_polygonal
logPosterior_polygonal function
circulant
circulant function
densityquantile.basehazardspec
densityquantile.basehazardspec function
B
B function
hazard_PP
hazard_PP function
basehazard.basehazardspec
basehazard.basehazardspec function
summary.mcmc
summary.mcmc function
distinfo.basehazardspec
distinfo.basehazardspec function
SPDEprec
SPDEprec function
densityquantile
densityquantile function
alpha
alpha function
baselinehazard
baselinehazard function
Et_PP
Et_PP function
density_PP
density_PP function
getparranges
getparranges function
mcmcLoop
iterator for MCMC loops
fixmatrix
fixmatrix function
getleneta
getleneta function
indepGaussianprior
indepGaussianprior function
MCE
MCE function
print.mlspatsurv
print.mlspatsurv function
covmodel
covmodel function
summary.mcmcspatsurv
summary.mcmcspatsurv function
loop.mcmc
loop over an iterator
setupHazard
setupHazard function
urlTemplate
urlTemplate function
hesscumbasehazard
hesscumbasehazard function
YfromGamma
YfromGamma function
mcmcProgressTextBar
text bar progress monitor
distinfo
distinfo function
mcmcProgressPrint
printing progress monitor
simsurv
simsurv function
circulant.matrix
circulant.matrix function
getcov
getcov function
quantile.mcmcspatsurv
quantile.mcmcspatsurv function
gompertzHaz
gompertzHaz function
fixedpars
fixedpars function
mcmcProgressNone
null progress monitor
reconstruct.bs
reconstruct.bs function
cumbasehazard
cumbasehazard function
gradbasehazard
gradbasehazard function
proposalVariance_gridded
proposalVariance_gridded function
gencens
gencens function
getOptCellwidth
getOptCellwidth function
proposalVariance
proposalVariance function
survspat
survspat function
mcmcPriors
mcmcPriors function
gridY_polygonal
gridY_polygonal function
circulant.numeric
circulant.numeric function
hasNext.iter
hasNext.iter function
print.mcmc
print.mcmc function
quantile.mlspatsurv
quantile.mlspatsurv function
randompars
randompars function
neighLocs
neighLocs function
SPDE
SPDE function
vcov.mcmcspatsurv
vcov.mcmcspatsurv function
is.burnin
is this a burn-in iteration?
omegapriorGauss
omegapriorGauss function
tpowHaz
tpowHaz function
grid2spix
grid2spix function
survival_PP
survival_PP function
QuadApprox
QuadApprox function
logPosterior_SPDE
logPosterior_SPDE function
makehamHaz
makehamHaz function
hazardpars
hazardpars function
hesscumbasehazard.basehazardspec
hesscumbasehazard.basehazardspec function
surv3d
Spatial Survival Plot in 3D
FFTgrid
FFTgrid function
getbb
getbb function
frailtylag1
frailtylag1 function
circulantij
circulantij function
spplot1
spplot1 function
print.mcmcspatsurv
print.mcmcspatsurv function
betapriorGauss
betapriorGauss function
hasNext
generic hasNext method
GammaFromY_SPDE
GammaFromY_SPDE function
grid2spdf
grid2spdf function
densityquantile_PP
densityquantile_PP function
survspatNS
survspatNS function
mcmcpars
mcmcpars function
vcov.mlspatsurv
vcov.mlspatsurv function
etapriorGauss
etapriorGauss function
priorposterior
priorposterior function
spatsurv-package
spatsurv
polyadd
polyadd function
midpts
midpts function
nextStep
next step of an MCMC chain
gradcumbasehazard
gradcumbasehazard function
setTxtProgressBar2
set the progress bar
gradcumbasehazard.basehazardspec
gradcumbasehazard.basehazardspec function
residuals.mcmcspatsurv
resuiduals.mcmcspatsurv function
setupPrecMatStruct
setupPrecMatStruct function
spatialpars
spatialpars function
showGrid
showGrid function
hessbasehazard.basehazardspec
hessbasehazard.basehazardspec function
logPosterior
logPosterior function
posteriorcov
posteriorcov function
NonSpatialLogLikelihood_or_gradient
NonSpatialLogLikelihood_or_gradient function
derivindepGaussianprior
derivindepGaussianprior function
proposalVariance_polygonal
proposalVariance_polygonal function
predict.mcmcspatsurv
predict.mcmcspatsurv function
Summarise
Summarise function
polymult
polymult function
transformweibull
transformweibull function
plotsurv
plotsurv function
print.textSummary
print.textSummary function
BsplineHaz
BsplineHaz function
proposalVariance_SPDE
proposalVariance_SPDE function
estimateY
estimateY function
neighOrder
neighOrder function
textSummary
textSummary function
getgrd
getgrd function
getGrid
getGrid function
txtProgressBar2
A text progress bar with label
spatsurvVignette
spatsurvVignette function
iteration
iteration number
resetLoop
reset iterator
allocate
allocate function
cumbasehazard.basehazardspec
cumbasehazard.basehazardspec function
hessbasehazard
hessbasehazard function
spplot_compare
spplot_compare function