Learn R Programming

⚠️There's a newer version (2.0) of this package.Take me there.

spatsurv

Spatial Survival Analysis R Package

The GitHub Version of this package is the developmental version.

The latest checked and tested version is available on CRAN, click HERE.

Copy Link

Version

Install

install.packages('spatsurv')

Monthly Downloads

747

Version

1.7

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

March 2nd, 2022

Functions in spatsurv (1.7)

SpikedExponentialCovFct

SpikedExponentialCovFct function

basehazard function

baseHazST function

cumbasehazard function

cumbasehazard.basehazardspec

cumbasehazard.basehazardspec function

getGrid function

fixmatrix function

frailtylag1 function

getOptCellwidth

getOptCellwidth function

baselinehazard function

basehazard.basehazardspec

basehazard.basehazardspec function

circulantij function

EvalCov function

grid2spix function

grid2spts function

ExponentialCovFct

ExponentialCovFct function

FFTgrid function

NonSpatialLogLikelihood_or_gradient

NonSpatialLogLikelihood_or_gradient function

PsplineHaz function

covmodel function

densityquantile_PP

densityquantile_PP function

derivindepGaussianprior

derivindepGaussianprior function

Summarise function

baselinehazard_multiWay

baselinehazard_multiWay function

betapriorGauss function

GammaFromY_SPDE

GammaFromY_SPDE function

gamma2risk function

TwoWayHazAdditive

TwoWayHazAdditive function

GammafromY function

Independent function

hazardexceedance

hazardexceedance function

hazardpars function

hesscumbasehazard

hesscumbasehazard function

hesscumbasehazard.basehazardspec

hesscumbasehazard.basehazardspec function

BsplineHaz function

CSplot function

boxplotRisk function

gencens function

derivindepGaussianpriorST

derivindepGaussianpriorST function

derivpsplineprior

derivpsplineprior function

allocate function

getgrd function

London Fire Brigade response times to dwelling fires, 2009

London Fire Brigade property

next step of an MCMC chain

getleneta function

QuadApprox function

getparranges function

densityquantile

densityquantile function

omegapriorGauss

omegapriorGauss function

gompertzHaz function

gradbasehazard function

YFromGamma_SPDE

YFromGamma_SPDE function

circulant.matrix

circulant.matrix function

densityquantile.basehazardspec

densityquantile.basehazardspec function

getsurvdata function

circulant.numeric

circulant.numeric function

YfromGamma function

distinfo.basehazardspec

distinfo.basehazardspec function

distinfo function

checkSurvivalData

checkSurvivalData function

circulant function

gridY_polygonal

gridY_polygonal function

fixParHaz function

cumulativeBspline.construct

cumulativeBspline.construct function

fixedpars function

etapriorGauss function

density_PP function

.onAttach function

estimateY function

proposalVariance_polygonal

proposalVariance_polygonal function

plotsurv function

plot.FFTgrid function

psplineRWprior function

getcov function

exponentialHaz function

gradcumbasehazard

gradcumbasehazard function

gradbasehazard.basehazardspec

gradbasehazard.basehazardspec function

hessbasehazard function

hessbasehazard.basehazardspec

hessbasehazard.basehazardspec function

makehamHaz function

hasNext.iter function

hazard_PP function

maxlikparamPHsurv

maxlikparamPHsurv function

imputationModel

imputationModel function

reconstruct.bs.coxph

reconstruct.bs.coxph function

simsurv function

reconstruct.bs function

insert function

invtransformweibull

invtransformweibull function

getBackground function

getBbasis function

gradcumbasehazard.basehazardspec

gradcumbasehazard.basehazardspec function

do we retain this iteration?

is this a burn-in iteration?

guess_t function

grid2spdf function

generic hasNext method

indepGaussianpriorST

indepGaussianpriorST function

inference.control

inference.control function

mcmcpars function

mcmcProgressTextBar

text bar progress monitor

iteration number

logPosterior_SPDE

logPosterior_SPDE function

spatialpars function

iterator for MCMC loops

indepGaussianprior

indepGaussianprior function

logPosterior_gridded

logPosterior_gridded function

loop over an iterator

logPosterior_polygonal

logPosterior_polygonal function

print.mcmcspatsurv

print.mcmcspatsurv function

print.mcmc function

midpts function

mcmcPriors function

logPosterior function

multiWayHaz function

tpowHaz function

proposalVariance_SPDE

proposalVariance_SPDE function

proposalVariance_gridded

proposalVariance_gridded function

polyadd function

polymult function

quantile.mlspatsurv

quantile.mlspatsurv function

neighLocs function

transformweibull

transformweibull function

randompars function

mcmcProgressNone

null progress monitor

mcmcProgressPrint

printing progress monitor

spplot1 function

spplot_compare function

neighOrder function

psplineprior function

quantile.mcmcspatsurv

quantile.mcmcspatsurv function

setTxtProgressBar2

set the progress bar

posteriorcov function

priorposterior function

omegapriorGaussST

omegapriorGaussST function

predict.mcmcspatsurv

predict.mcmcspatsurv function

proposalVariance

proposalVariance function

setupHazard function

residuals.mcmcspatsurv

resuiduals.mcmcspatsurv function

optifix function

summary.mcmc function

rootWeibullHaz function

timevaryingPL function

textSummary function

summary.mcmcspatsurv

summary.mcmcspatsurv function

spatsurvVignette

spatsurvVignette function

spatsurv-package

txtProgressBar2

A text progress bar with label

urlTemplate function

print.mlspatsurv

print.mlspatsurv function

Spatial Survival Plot in 3D

print.textSummary

print.textSummary function

survival_PP function

vcov.mlspatsurv

vcov.mlspatsurv function

vcov.mcmcspatsurv

vcov.mcmcspatsurv function

weibullHaz function

reconstruct.bs.mcmcspatsurv

reconstruct.bs.mcmcspatsurv function

setupPrecMatStruct

setupPrecMatStruct function

survspatNS function

showGrid function

survspat function

Bspline.construct

Bspline.construct function

SPDEprec function