Learn R Programming

⚠️There's a newer version (2.0) of this package.Take me there.

spatsurv

Spatial Survival Analysis R Package

The GitHub Version of this package is the developmental version.

The latest checked and tested version is available on CRAN, click HERE.

Copy Link

Version

Install

install.packages('spatsurv')

Monthly Downloads

747

Version

1.8-2

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

November 22nd, 2022

Functions in spatsurv (1.8-2)

CSplot function

BsplineHaz function

GammafromY function

GammaFromY_SPDE

GammaFromY_SPDE function

QuadApprox function

Bspline.construct

Bspline.construct function

TwoWayHazAdditive

TwoWayHazAdditive function

Summarise function

ExponentialCovFct

ExponentialCovFct function

FFTgrid function

Independent function

NonSpatialLogLikelihood_or_gradient

NonSpatialLogLikelihood_or_gradient function

basehazard function

baseHazST function

PsplineHaz function

EvalCov function

boxplotRisk function

SPDEprec function

YfromGamma function

YFromGamma_SPDE

YFromGamma_SPDE function

SpikedExponentialCovFct

SpikedExponentialCovFct function

baselinehazard function

basehazard.basehazardspec

basehazard.basehazardspec function

cumbasehazard function

derivindepGaussianpriorST

derivindepGaussianpriorST function

derivpsplineprior

derivpsplineprior function

densityquantile.basehazardspec

densityquantile.basehazardspec function

checkSurvivalData

checkSurvivalData function

fixParHaz function

densityquantile

densityquantile function

circulant function

fixedpars function

estimateY function

.onAttach function

getleneta function

getgrd function

allocate function

covmodel function

distinfo function

London Fire Brigade property

circulantij function

distinfo.basehazardspec

distinfo.basehazardspec function

London Fire Brigade response times to dwelling fires, 2009

betapriorGauss function

circulant.matrix

circulant.matrix function

density_PP function

cumulativeBspline.construct

cumulativeBspline.construct function

circulant.numeric

circulant.numeric function

baselinehazard_multiWay

baselinehazard_multiWay function

gamma2risk function

exponentialHaz function

etapriorGauss function

cumbasehazard.basehazardspec

cumbasehazard.basehazardspec function

gradcumbasehazard

gradcumbasehazard function

gradbasehazard.basehazardspec

gradbasehazard.basehazardspec function

getGrid function

getOptCellwidth

getOptCellwidth function

gradbasehazard function

gompertzHaz function

gridY_polygonal

gridY_polygonal function

is this a burn-in iteration?

densityquantile_PP

densityquantile_PP function

getBackground function

do we retain this iteration?

derivindepGaussianprior

derivindepGaussianprior function

getBbasis function

indepGaussianprior

indepGaussianprior function

logPosterior_polygonal

logPosterior_polygonal function

loop over an iterator

imputationModel

imputationModel function

gencens function

grid2spix function

frailtylag1 function

fixmatrix function

hasNext.iter function

getsurvdata function

grid2spts function

getparranges function

multiWayHaz function

midpts function

print.mcmc function

hessbasehazard function

getcov function

grid2spdf function

gradcumbasehazard.basehazardspec

gradcumbasehazard.basehazardspec function

logPosterior_gridded

logPosterior_gridded function

hazard_PP function

mcmcPriors function

logPosterior_SPDE

logPosterior_SPDE function

iterator for MCMC loops

mcmcProgressNone

null progress monitor

quantile.mcmcspatsurv

quantile.mcmcspatsurv function

psplineprior function

inference.control

inference.control function

neighLocs function

setupHazard function

neighOrder function

indepGaussianpriorST

indepGaussianpriorST function

hessbasehazard.basehazardspec

hessbasehazard.basehazardspec function

hazardpars function

insert function

setTxtProgressBar2

set the progress bar

spatialpars function

print.mcmcspatsurv

print.mcmcspatsurv function

hazardexceedance

hazardexceedance function

mcmcpars function

logPosterior function

guess_t function

polyadd function

polymult function

simsurv function

mcmcProgressTextBar

text bar progress monitor

invtransformweibull

invtransformweibull function

iteration number

mcmcProgressPrint

printing progress monitor

setupPrecMatStruct

setupPrecMatStruct function

proposalVariance_polygonal

proposalVariance_polygonal function

weibullHaz function

showGrid function

psplineRWprior function

hesscumbasehazard.basehazardspec

hesscumbasehazard.basehazardspec function

maxlikparamPHsurv

maxlikparamPHsurv function

residuals.mcmcspatsurv

resuiduals.mcmcspatsurv function

rootWeibullHaz function

generic hasNext method

hesscumbasehazard

hesscumbasehazard function

makehamHaz function

print.textSummary

print.textSummary function

print.mlspatsurv

print.mlspatsurv function

survspatNS function

survspat function

reconstruct.bs.mcmcspatsurv

reconstruct.bs.mcmcspatsurv function

plotsurv function

plot.FFTgrid function

optifix function

posteriorcov function

omegapriorGaussST

omegapriorGaussST function

next step of an MCMC chain

omegapriorGauss

omegapriorGauss function

summary.mcmc function

proposalVariance_SPDE

proposalVariance_SPDE function

spplot1 function

urlTemplate function

spplot_compare function

proposalVariance

proposalVariance function

txtProgressBar2

A text progress bar with label

priorposterior function

predict.mcmcspatsurv

predict.mcmcspatsurv function

reconstruct.bs function

reconstruct.bs.coxph

reconstruct.bs.coxph function

quantile.mlspatsurv

quantile.mlspatsurv function

proposalVariance_gridded

proposalVariance_gridded function

spatsurv-package

randompars function

textSummary function

summary.mcmcspatsurv

summary.mcmcspatsurv function

Spatial Survival Plot in 3D

survival_PP function

vcov.mcmcspatsurv

vcov.mcmcspatsurv function

timevaryingPL function

tpowHaz function

transformweibull

transformweibull function

spatsurvVignette

spatsurvVignette function

vcov.mlspatsurv

vcov.mlspatsurv function