ggenvironmentalspace: Title Plotting to show the quality controlled data in environmental space.

Description

Title Plotting to show the quality controlled data in environmental space.

Usage

ggenvironmentalspace(
  qcdata,
  xvar = NULL,
  yvar = NULL,
  zvar = NULL,
  labelvar = NULL,
  type = "2D",
  xlab = NULL,
  ylab = NULL,
  zlab = NULL,
  ncol = 2,
  nrow = 2,
  scalecolor = "viridis",
  colorvalues = "auto",
  legend_position = "right",
  legend_inside = NULL,
  pointsize = 1,
  themebackground = "bw",
  fontsize = 13,
  legtitle = "blank",
  ggxangle = 1,
  xhjust = 0.5,
  xvjust = 1,
  main = NULL,
  pch = "auto",
  lpos3d = "left",
  cexsym = NULL
)

Value

If "2D" or "1D" is the selected type, then a ggplot2 graph will be the output and a "3D" type will return a scatterplot3D plot.

Arguments

qcdata: dataframe Data output from quality controlled function extract_clean_data and classify_data.
xvar: string The variable to be on the x-axis.
yvar: string The variable to be on the y-axis.
zvar: string The variable to be on the z-axis only if the 3D plot type is selected..
labelvar: string Column name in the quality controlled data that has the labels. This applies is the 3D plot is selected.
type: string Its 1D, 2D for a two dimensional ggplot2 graph or 3D for a 3-dimensional graph for multivariate data.
xlab, ylab, zlab: string x-axis, y-axis, and z-axis label.
ncol, nrow: integer If number of groups are greater than 1, then number of rows and columns can be set. Check ggplot2 facet parameters on how the columns are set.
scalecolor: string The scale color themes supported are grey, manual, viridis. If manual is selected, then the colorvalues should be provided for the different colors for each data label.
colorvalues: If manual is selected, then the colorvalues should be provided for the different colors for each data label. If 3D is selected and colorvalues is not auto, then colors should determined.
legend_position: string Its either bottom, top or inside. If the inside is selected then the vector with graph coordinates should be provided to avoid the legend overlap with the graph contents.
legend_inside: vector If the inside for legend position is selected then the vector with graph coordinates should be provided to avoid the legend overlap with the graph contents.
pointsize: decimal The size of the points.
themebackground: string Either classic, bw or gray to set the plot theme. This is based on ggplot2.
fontsize: integer Indicates the sizes of fonts for the whole graph.
legtitle: string Either blank or TRUE to set the legend title for the 2D plot.
ggxangle: integer Indicates the angle of the x-axis text. The dafualt is 45 but depend on the data.
xhjust: numeric Indicates the distance of the x-axis text from the x-axis line in a vertical direction.
xvjust: numeric Indicates the distance of the x-axis text from the x-axis line in a horizontal direction.
main: string Plot title
pch: string Either auto: the point characters will be automatically set or different pch are set.
lpos3d: string Indicates the legend position for the 3D graph. bottom, left, and right are accepted.
cexsym: numeric The size of pch in the 3D plot.