get_metabolights_study

ID of the metabolights study to download.

mtblsID

Directory to where download the data. The data will be stored in "/directory/mtblsID"

directory

Download data files and metadata files from the specified study form metabolights databaes.

Provides a set of methods for metabolomics
data analysis, including data loading in different formats,
pre-processing, metabolite identification, univariate and multivariate
data analysis, machine learning, feature selection and pathway analysis. Case studies
can be found on the website: <http://darwin.di.uminho.pt/metabolomicspackage/index.html>.
'rcytoscapejs' is not present in a mainstream repository, but it can be obtained by
typing 'devtools::install_github('cytoscape/r-cytoscape.js')' on the R command line.

Miguel Rocha

specmine

Metabolomics and Spectral Data Analysis and Mining

get_metabolights_study function

You must not call this function unless you have Python (&gt;=3.5.2) installed in your machine and the modules isatools, os, ftplib, glob, logging, pandas, tempfile, shutil, re.

get_metabolights_study: Download Metabolights study files.

Description

Usage

Arguments

Warning

Examples