get_metabPaths_org

Organism code. The correct code for an organism can be consulted using function <code><a rd-options="" href="/link/get_OrganismsCodes?package=specmine&version=3.1.6" data-mini-rdoc="specmine::get_OrganismsCodes">get_OrganismsCodes</a></code>.

org_code

Get vector with paths numbers that occur in the given organism, named with the full paths names.

Provides a set of methods for metabolomics
data analysis, including data loading in different formats,
pre-processing, metabolite identification, univariate and multivariate
data analysis, machine learning, feature selection and pathway analysis. Case studies
can be found on the website: <http://bio.di.uminho.pt/metabolomicspackage/index.html>.
This package suggests 'rcytoscapejs', a package not in mainstream repositories. If you need to install it,
use: devtools::install_github('cytoscape/r-cytoscape.js@v0.0.7').

Miguel Rocha

specmine

Metabolomics and Spectral Data Analysis and Mining

get_metabPaths_org function

Organism code. The correct code for an organism can be consulted using function <code><a rd-options='' href='get_OrganismsCodes'>get_OrganismsCodes</a></code>.

get_metabPaths_org: Get the metabolic pathways present in given organism.

Description

Usage

Arguments