specmine (version 4.0.0)

create_pathway_with_reactions: Creates the pathway, with reactions included in the nodes

Description

Creates the pathway, with reactions included in the nodes

Usage

create_pathway_with_reactions(
  path,
  path.name,
  identified_cpds,
  nodeNames = "kegg",
  nodeTooltip = FALSE,
  map.zoom = FALSE,
  map.layout = "preset",
  map.width = NULL,
  map.height = NULL
)

Value

A cyjShiny widget representing the pathway with reactions included in the nodes. The widget contains the pathway graph ready for interactive visualization, with identified compounds highlighted when they are present in the pathway.

Arguments

path

TODO.

path.name

TODO.

identified_cpds

TODO.

nodeNames

TODO.

nodeTooltip

TODO.

map.zoom

TODO.

map.layout

TODO.

map.width

TODO.

map.height

TODO.

Examples

if (FALSE) {
path <- get_MetabolitePath("hsa00010")
create_pathway_with_reactions(
  path = path,
  path.name = "hsa00010",
  identified_cpds = c("cpd:C00031", "cpd:C00022")
)
}