spectacles (version 0.5-0)

aggregate_spectra: Aggregates spectral and data information

Description

Aggregates spectral and data information of a Spectra object using a user-defined function

Usage

# S4 method for Spectra
aggregate_spectra(obj, fun = mean, ...)
# S4 method for SpectraDataFrame
aggregate_spectra(obj, fun = mean, id = NULL,
  ...)

Arguments

obj

see below

fun

see below

...

see below

id

see below

Value

An object of the same class as obj

Methods

x=Spectra

aggregate_spectra(obj, fun=mean, ...)

rll obj A Spectra object fun An aggregation function ... Expressions evaluated in the context of fun

x=SpectraDataFrame

aggregate_spectra(obj, fun=mean, id=NULL, ...)

rll obj A SpectraDataFrame object fun An aggregation function id Attribute(s) to split the object (character vector) ... Expressions evaluated in the context of fun

Details

There is two distinct function for Spectra and SpectraDataFrame classes. For SpectraDataFrame objects, associated data is also aggregated using the function provided by the fun option. Additionally, the method for SpectraDataFrame has an id option that allows to specify an attribute which will be used to split the object, apply sequentially the fun function, and recombine the results in an unique object.

See Also

apply_spectra

Examples

# NOT RUN {
# Loading example data
data(australia)
spectra(australia) <- sr_no ~ ... ~ 350:2500

# Aggregation on the whole collection
m <- aggregate_spectra(australia, fun = mean)
plot(m)

# Aggregation factor-wise

# Generate some kind of factor
australia$fact <- sample(LETTERS[1:3], size = nrow(australia), replace = TRUE)
m <- aggregate_spectra(australia, fun = mean, id = 'fact')
plot(m)
# }