sppDistMatrix

distobj

The species vector (see <code><a rd-options="" href="/link/sppVector?package=spider&version=1.5.0" data-mini-rdoc="spider::sppVector">sppVector</a></code>).

sppVector

Creates a matrix giving the mean distances within and between species.

Barcoding

Analysis of species limits and DNA barcoding data. Included are functions for generating important summary statistics from DNA barcode data, assessing specimen identification efficacy, testing and optimizing divergence threshold limits, assessment of diagnostic nucleotides, and calculation of the probability of reciprocal monophyly. Additionally, a sliding window function offers opportunities to analyse information across a gene, often used for marker design in degraded DNA studies. Further information on the package has been published in Brown et al (2012) <doi:10.1111/j.1755-0998.2011.03108.x>.

Rupert Collins

spider

Species Identity and Evolution in R

sppDistMatrix function

<dl><dt>distobj</dt>
<dd>A distance matrix.</dd>
<dt>sppVector</dt>
<dd>The species vector (see <code>sppVector</code>).</dd></dl>

Arguments

Samuel Brown &lt;s_d_j_brown@hotmail.com&gt;

Author

Mean intra- and inter-specific distance matrix — sppDistMatrix

<dl>

<dt>distobj</dt>
<dd>A distance matrix.</dd>


<dt>sppVector</dt>
<dd>The species vector (see <code>sppVector</code>).</dd>

</dl>

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sppDistMatrix: Mean intra- and inter-specific distance matrix

Description

Usage

Value

Arguments

Author

Examples