Usage
## S3 method for class 'spikeSlabGAM':
plot(x, labels = NULL,
cumulative = TRUE, commonEtaScale = FALSE,
aggregate = mean, quantiles = c(0.1, 0.9),
gridlength = 20, base_size = 12, ggElems = list(),
rows = NULL, cols = NULL, widths = NULL,
heights = NULL, maxPlotsPerPage = 6, ...)Arguments
x
a fitted spikeSlabGAM model
labels
a character vector of names of model terms
to be plotted
cumulative
Defaults to TRUE, in which case all
lower order terms that are involved in an interaction are
cumulated and then plotted (e.g, if a model contains 2
smooth effects and their interaction, ONLY the sum of the
marginal smooth and linear terms and all
commonEtaScale
use the same limits for all
vertical axes of the different panels? Defaults to FALSE.
Can be useful to compare effect sizes more effectively
between panels, but tends to mess up the scales.
aggregate
(function) which summary statistic to
use for the posterior of the model terms. Defaults to the
mean.
quantiles
which quantiles to use for the borders
of credible regions. Defaults to 10% and 90%
percentiles. Set to NULL to omit plotting credible
regions.
gridlength
length of the (univariate) grids for
the covariates on which to evaluate the posterior.
Defaults to 20.
base_size
default base font size for plot (see
e.g. theme_gray) ggElems
a list of plot elements to give to
ggplot. Use this to supply custom themes or
colors, fortify the plot(s) with partial residuals etc.
Defaults to an empty list. Unless specified differently
here, the default ggplot-theme
(
rows
a list controlling the positioning of the
various plots on the device. See
grid.arrange cols
a list controlling the positioning of the
various plots on the device. See
grid.arrange widths
a list controlling the positioning of the
various plots on the device. See
grid.arrange heights
a list controlling the positioning of the
various plots on the device. See
grid.arrange maxPlotsPerPage
maximum number of plots rendered
on a single page/device. Defaults to 9.
...
arguments passed from or to other methods (not
used)