spkTools (version 1.28.0)

plotSpkBox: Boxplots of Fold Changes Calculated by spkBox

Description

Plots boxplots of the data resulting from a call to spkBox.

Usage

plotSpkBox(boxs, fc=2, box.names=NULL, ...)

Arguments

boxs

the output of a call to spkBox

fc

expected fold change

box.names

names to be printed below each boxplot

...

parameters passed to boxplot

Value

Boxplots for spike-in and non-spike-in comparisons stratified by ALE strata are produced.

Examples

data(affy)
affySlope <- spkSlope(affy)
affyBox <- spkBox(affy, affySlope)
plotSpkBox(affyBox)