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spm12r (version 2.0)

spm12_segment: SPM12 Segment

Description

Performs SPM12 Segmentation on an Image

Usage

spm12_segment(filename, retimg = TRUE, set_origin = TRUE, add_spm_dir = TRUE, spmdir = spm_dir(), clean = TRUE, verbose = TRUE, reorient = FALSE, ...)

Arguments

filename
File to be segmented
retimg
Logical indicating if image should be returned or result from run_matlab_script
set_origin
Run acpc_reorient on image first. Warning, this will set the orientation differently
add_spm_dir
Add SPM12 directory from this package
spmdir
SPM dir to add, will use package default directory
clean
Remove scripts from temporary directory after running
verbose
Print diagnostic messages
reorient
if retimg=TRUE pass to readNIfTI
...
Arguments passed to run_spm12_script

Value

Result from run_matlab_script or nifti file, depending on retimg