Usage
spm12_slice_timing(filename, time_points = NULL, nslices, tr, ta = tr - tr/nslices, slice_order = 1:nslices, ref_slice, prefix = "a", add_spm_dir = TRUE, spmdir = spm_dir(), clean = TRUE, verbose = TRUE, outdir = tempdir(), retimg = TRUE, reorient = FALSE, ...)
Arguments
filename
Files to be slice-time corrected
time_points
Time points to run slice-time correction. If filename is a
4D file, then will do all the time points. Otherwise, filename must be a character
vector of 3D files or a list of 3D nifti objects.
nslices
Number of slices in the images
tr
Repetition time (in seconds)
ta
Time between the first and the last slice within one scan
slice_order
Order slices were taken (if not specified, assumed ascending),
bottom slice = 1
prefix
Prefix to append to front of image filename
add_spm_dir
Add SPM12 directory from this package
spmdir
SPM dir to add, will use package default directory
clean
Remove scripts from temporary directory after running
verbose
Print diagnostic messages
outdir
Directory to copy results
retimg
(logical) return image of class nifti
reorient
(logical) If retimg, should file be reoriented when read in?
Passed to readNIfTI.