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spocc (version 0.1.0)

R interface to many species occurrence data sources

Description

A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as they sources become easily available.

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Install

install.packages('spocc')

Monthly Downloads

3,649

Version

0.1.0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

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Repository

https://github.com/ropensci/spocc

Maintainer

Scott Chamberlain

Last Published

March 5th, 2014

Functions in spocc (0.1.0)

Occ output or data.frame to sp SpatialPointsDataFrame class

Palettes to use with maprcharts function

Search for species occurrence data across many data sources.

spocc_blanktheme

Custom ggplot2 theme

Post a file as a Github gist

spocc_parseresults

Parse results from call to occurrencelist endpoint

spocc_stylegeojson

Style a data.frame prior to converting to geojson.

spocc_commas_to_periods

Convert commas to periods in lat/long data

spocc_create_gist

Function that takes a list of files and creates payload for API

spocc_colClasses

Coerces data.frame columns to the specified classes

Look up options for parameters passed to each source

Get palette actual name from longer names

Get colors from a vector of input taxonomic names, and palette

Change names to be the same for each taxon.

ggplot2 visualization of species occurences

spocc_gbifxmlToDataFrame

Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3

spocc_get_credentials

Get Github credentials from use in console

Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box

Combine results from occ calls to a single data.frame

Make an interactive map to view in the browser

Capitalize the first letter of a character string.

Create a spatial points dataframe from a spocc search.

spocc_togeojson

Convert spatial data files to GeoJSON from various formats.

spocc_rcharts_togeojson

Get palette actual name from longer names

Base maps to use with maprcharts function

Make an interactive map to view in the browser as a Github gist

Print brief summary of occ function output