spocc v0.1.2
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R interface to many species occurrence data sources
A programmatic interface to many species occurrence data sources,
including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine
eBird, AntWeb, and more as they sources become easily available.
Functions in spocc
| Name | Description | |
| basemaps | Base maps to use with maprcharts function | |
| bbox2wkt | Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box | |
| occ2sp | Occ output or data.frame to sp SpatialPointsDataFrame class | |
| occ_options | Look up options for parameters passed to each source | |
| spocc_stylegeojson | Style a data.frame prior to converting to geojson. | |
| occ_to_sp | Create a spatial points dataframe from a spocc search. | |
| spocc_get_credentials | Get Github credentials from use in console | |
| print.occdat | Print brief summary of occ function output | |
| occ | Search for species occurrence data across many data sources. | |
| mapleaflet | Make an interactive map to view in the browser | |
| spocc_togeojson | Convert spatial data files to GeoJSON from various formats. | |
| spocc_create_gist | Function that takes a list of files and creates payload for API | |
| spocc_capwords | Capitalize the first letter of a character string. | |
| spocc_rcharts_togeojson | Get palette actual name from longer names | |
| occ2df | Combine results from occ calls to a single data.frame | |
| fixnames | Change names to be the same for each taxon. | |
| palettes | Palettes to use with maprcharts function | |
| get_palette | Get palette actual name from longer names | |
| wkt_vis | Visualize well-known text area's on a map. | |
| spocc_colClasses | Coerces data.frame columns to the specified classes | |
| spocc_commas_to_periods | Convert commas to periods in lat/long data | |
| spocc_gist | Post a file as a Github gist | |
| mapgist | Make an interactive map to view in the browser as a Github gist | |
| clean_spocc | Clean spocc data | |
| mapggplot | ggplot2 visualization of species occurences | |
| get_colors | Get colors from a vector of input taxonomic names, and palette | |
| spocc_gbifxmlToDataFrame | Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3 | |
| spocc_parseresults | Parse results from call to occurrencelist endpoint | |
| spocc_blanktheme | Custom ggplot2 theme | |
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Details
| License | MIT + file LICENSE |
| Date | 2014-05-01 |
| URL | https://github.com/ropensci/spocc |
| BugReports | https://github.com/ropensci/spocc/issues |
| LazyLoad | yes |
| LazyData | yes |
| VignetteBuilder | knitr |
| Roxygen | list(wrap = FALSE) |
| Packaged | 2014-05-01 19:31:58 UTC; sacmac |
| NeedsCompilation | no |
| Repository | CRAN |
| Date/Publication | 2014-05-02 07:13:24 |
| imports | AntWeb (>= 0.6.1) , assertthat , data , data.table , ecoengine (>= 1.3) , ggmap , httr , leafletR (>= 0.2-0) , lubridate , maptools , plyr , rbison (>= 0.3.2) , RColorBrewer , rebird (>= 0.1.1) , rgbif (>= 0.6.2) , rgdal , rgeos , rinat (>= 0.1.1) , RJSONIO , rworldmap , sp , XML |
| depends | ggplot2 |
| suggests | knitr , roxygen2 , taxize , testthat |
| Contributors | Karthik Ram, Scott Chamberlain, Edmund Hart |
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