spocc v0.1.2


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R interface to many species occurrence data sources

A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as they sources become easily available.

Functions in spocc

Name Description
basemaps Base maps to use with maprcharts function
bbox2wkt Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box
occ2sp Occ output or data.frame to sp SpatialPointsDataFrame class
occ_options Look up options for parameters passed to each source
spocc_stylegeojson Style a data.frame prior to converting to geojson.
occ_to_sp Create a spatial points dataframe from a spocc search.
spocc_get_credentials Get Github credentials from use in console
print.occdat Print brief summary of occ function output
occ Search for species occurrence data across many data sources.
mapleaflet Make an interactive map to view in the browser
spocc_togeojson Convert spatial data files to GeoJSON from various formats.
spocc_create_gist Function that takes a list of files and creates payload for API
spocc_capwords Capitalize the first letter of a character string.
spocc_rcharts_togeojson Get palette actual name from longer names
occ2df Combine results from occ calls to a single data.frame
fixnames Change names to be the same for each taxon.
palettes Palettes to use with maprcharts function
get_palette Get palette actual name from longer names
wkt_vis Visualize well-known text area's on a map.
spocc_colClasses Coerces data.frame columns to the specified classes
spocc_commas_to_periods Convert commas to periods in lat/long data
spocc_gist Post a file as a Github gist
mapgist Make an interactive map to view in the browser as a Github gist
clean_spocc Clean spocc data
mapggplot ggplot2 visualization of species occurences
get_colors Get colors from a vector of input taxonomic names, and palette
spocc_gbifxmlToDataFrame Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3
spocc_parseresults Parse results from call to occurrencelist endpoint
spocc_blanktheme Custom ggplot2 theme
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License MIT + file LICENSE
Date 2014-05-01
URL https://github.com/ropensci/spocc
BugReports https://github.com/ropensci/spocc/issues
LazyLoad yes
LazyData yes
VignetteBuilder knitr
Roxygen list(wrap = FALSE)
Packaged 2014-05-01 19:31:58 UTC; sacmac
NeedsCompilation no
Repository CRAN
Date/Publication 2014-05-02 07:13:24

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