Learn R Programming

⚠️There's a newer version (1.2.4) of this package.Take me there.

spocc (version 0.1.4)

R interface to many species occurrence data sources

Description

A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as they sources become easily available.

Copy Link

Version

Install

install.packages('spocc')

Monthly Downloads

17,039

Version

0.1.4

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/ropensci/spocc

Maintainer

Scott Chamberlain

Last Published

June 25th, 2014

Functions in spocc (0.1.4)

Get palette actual name from longer names

spocc_stylegeojson

Style a data.frame prior to converting to geojson.

Search for species occurrence data across many data sources.

Base maps to use with maprcharts function

spocc_commas_to_periods

Convert commas to periods in lat/long data

spocc_gbifxmlToDataFrame

Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3

Change names to be the same for each taxon.

spocc_blanktheme

Custom ggplot2 theme

Get colors from a vector of input taxonomic names, and palette

spocc_get_credentials

Get Github credentials from use in console

Print brief summary of occ function output

ggplot2 visualization of species occurences

spocc_create_gist

Function that takes a list of files and creates payload for API

Palettes to use with maprcharts function

spocc_rcharts_togeojson

Get palette actual name from longer names

Visualize well-known text area's on a map.

Make an interactive map to view in the browser

sp etc. objects handler

spocc_parseresults

Parse results from call to occurrencelist endpoint

Combine results from occ calls to a single data.frame

Capitalize the first letter of a character string.

Look up options for parameters passed to each source

spocc_togeojson

Convert spatial data files to GeoJSON from various formats.

spocc_colClasses

Coerces data.frame columns to the specified classes

Post a file as a Github gist

Clean spocc data

Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box

Create a spatial points dataframe from a spocc search.

Make an interactive map to view in the browser as a Github gist

Occ output or data.frame to sp SpatialPointsDataFrame class