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spocc (version 0.2.0)

R interface to many species occurrence data sources

Description

A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as they sources become easily available.

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Install

install.packages('spocc')

Monthly Downloads

3,649

Version

0.2.0

License

MIT + file LICENSE

Issues

Pull Requests

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Repository

https://github.com/ropensci/spocc

Maintainer

Scott Chamberlain

Last Published

August 6th, 2014

Functions in spocc (0.2.0)

Base maps to use with maprcharts function

Get palette actual name from longer names

ggplot2 visualization of species occurences

spocc_gbifxmlToDataFrame

Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3

Create a spatial points dataframe from a spocc search.

Get colors from a vector of input taxonomic names, and palette

spocc_rcharts_togeojson

Get palette actual name from longer names

Print brief summary of occ function output

Look up options for parameters passed to each source

Occ output or data.frame to sp SpatialPointsDataFrame class

spocc_get_credentials

Get Github credentials from use in console

Make an interactive map to view in the browser

Palettes to use with maprcharts function

Visualize well-known text area's on a map.

spocc_colClasses

Coerces data.frame columns to the specified classes

spocc_blanktheme

Custom ggplot2 theme

Combine results from occ calls to a single data.frame

spocc_commas_to_periods

Convert commas to periods in lat/long data

Make an interactive map to view in the browser as a Github gist

Plot occ function output on a map (uses base plots via the rworldmap package)

Capitalize the first letter of a character string.

spocc_parseresults

Parse results from call to occurrencelist endpoint

spocc_stylegeojson

Style a data.frame prior to converting to geojson.

spocc_togeojson

Convert spatial data files to GeoJSON from various formats.

Clean spocc data

print.occdatind

Print method for individual data sources

Search for species occurrence data across many data sources.

Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box

Change names to be the same for each taxon.

sp etc. objects handler

Post a file as a Github gist

spocc_create_gist

Function that takes a list of files and creates payload for API