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spocc (version 0.2.2)

R Interface to Many Species Occurrence Data Sources.

Description

A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as they sources become easily available.

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Install

install.packages('spocc')

Monthly Downloads

2,717

Version

0.2.2

License

MIT + file LICENSE

Issues

Pull Requests

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Repository

https://github.com/ropensci/spocc

Maintainer

Scott Chamberlain

Last Published

October 24th, 2014

Functions in spocc (0.2.2)

Clean spocc data

Search for species names across many data sources.

Base maps to use with maprcharts function

Combine results from occ calls to a single data.frame

Make an interactive map to view in the browser

Palettes to use with maprcharts function

Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box

spocc_togeojson

Convert spatial data files to GeoJSON from various formats.

spocc_stylegeojson

Style a data.frame prior to converting to geojson.

Look up options for parameters passed to each source

Visualize well-known text area's on a map.

spocc_colClasses

Coerces data.frame columns to the specified classes

spocc_blanktheme

Custom ggplot2 theme

Make an interactive map to view in the browser as a Github gist

Create a spatial points dataframe from a spocc search.

spocc_gbifxmlToDataFrame

Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3

Automatically generate coverages for a spocc search

R interface to many species occurrence data sources

ggplot2 visualization of species occurences

spocc_get_credentials

Get Github credentials from use in console

sp etc. objects handler

Capitalize the first letter of a character string.

spocc_duplicates

A note about duplicate occurrence records

Occ output or data.frame to sp SpatialPointsDataFrame class

spocc_create_gist

Function that takes a list of files and creates payload for API

Get colors from a vector of input taxonomic names, and palette

Change names to be the same for each taxon.

Get palette actual name from longer names

spocc_rcharts_togeojson

Get palette actual name from longer names

Search for species occurrence data across many data sources.

spocc objects and their print, plot, and summary methods

Post a file as a Github gist

occ_names_options

Look up options for parameters passed to each source for occ_names function