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spocc (version 0.2.4)

R Interface to Species Occurrence Data Sources

Description

A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as sources become easily available. This package includes functionality for retrieving species occurrence data, combining that data, and creating various kinds of static and interactive maps.

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Version

Install

install.packages('spocc')

Monthly Downloads

3,649

Version

0.2.4

License

MIT + file LICENSE

Issues

18

Pull Requests

0

Stars

120

Forks

28

Maintainer

Scott Chamberlain

Last Published

January 22nd, 2015

Functions in spocc (0.2.4)

fixnames

Change names to be the same for each taxon.
handle_sp

sp etc. objects handler
basemaps

Base maps to use with maprcharts function
get_colors

Get colors from a vector of input taxonomic names, and palette
spocc-package

R interface to many species occurrence data sources
wkt_vis

Visualize well-known text area's on a map.
spocc_type_sum

Type summary
clean_spocc

Clean spocc data
spocc_capwords

Capitalize the first letter of a character string.
spocc_objects

spocc objects and their print, plot, and summary methods
occ_options

Look up options for parameters passed to each source
palettes

Palettes to use with maprcharts function
spocc_duplicates

A note about duplicate occurrence records
spocc_colClasses

Coerces data.frame columns to the specified classes
spocc_togeojson

Convert spatial data files to GeoJSON from various formats.
mapleaflet

Make an interactive map to view in the browser
mapggplot

ggplot2 visualization of species occurences
occ_coverage

Automatically generate coverages for a spocc search
occ

Search for species occurrence data across many data sources.
occ_to_sp

Create a spatial points dataframe from a spocc search.
occ_names

Search for species names across many data sources.
spocc_rcharts_togeojson

Get palette actual name from longer names
bbox2wkt

Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box
mapgist

Make an interactive map to view in the browser as a Github gist
occ2df

Combine results from occ calls to a single data.frame
get_palette

Get palette actual name from longer names
spocc_blanktheme

Custom ggplot2 theme
occ_names_options

Look up options for parameters passed to each source for occ_names function
spocc_stylegeojson

Style a data.frame prior to converting to geojson.