A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine, eBird, iDigBio, VertNet, OBIS, and ALA. Includes functionality for retrieving species occurrence data, and combining that data.
The main function to use is occ()
- a single interface to
many species occurrence databases (see below for a list).
Other functions include:
Provider | Web |
GBIF | http://www.gbif.org/ |
BISON | https://bison.usgs.gov/ |
eBird | http://ebird.org/content/ebird/ |
iNaturalist | http://www.inaturalist.org/ |
Berkeley ecoengine | https://ecoengine.berkeley.edu/ |
VertNet | http://vertnet.org/ |
iDigBio | https://www.idigbio.org/ |
OBIS | http://www.iobis.org/ |
See spocc_duplicates()
for more.
All data cleaning functionality is in a new package: scrubr
(https://github.com/ropensci/scrubr).
On CRAN: https://cran.r-project.org/package=scrubr.
See also package
https://cran.r-project.org/package=CoordinateCleaner
All mapping functionality is now in a separate package: mapr`` (<https://github.com/ropensci/mapr>) (formerly known as
spoccutils`).
On CRAN: https://cran.r-project.org/package=mapr