get_univarCox_result

The function `get_univarCox_result` is used to perform the univariate Cox proportional hazards regression analysis.

A systematic bioinformatics tool to perform single-sample mutation-based pathway analysis by integrating somatic mutation data with the Protein-Protein Interaction (PPI) network. In this method, we use local and global weighted strategies to evaluate the effects of network genes from mutations according to the network topology and then calculate the mutation-based pathway enrichment score (ssMutPES) to reflect the accumulated effect of mutations of each pathway. Subsequently, the ssMutPES profiles are used for unsupervised spectral clustering to identify cancer subtypes.

Junwei Han

ssMutPA

Single-Sample Mutation-Based Pathway Analysis

Yalan He

Qian Wang

get_univarCox_result function

<dl><dt>DE_path_sur</dt>
<dd>A matrix containing the activity values of all pathways in each sample, along with the survival time and survival status of the samples.Note that the column names of survival time and survival status must be "survival" and "event".</dd></dl>

Arguments

Perform the univariate Cox proportional hazards regression analysis. — get_univarCox_result

<dl>

<dt>DE_path_sur</dt>
<dd>A matrix containing the activity values of all pathways in each sample, along with the survival time and survival status of the samples.Note that the column names of survival time and survival status must be "survival" and "event".</dd>

</dl>

get_univarCox_result: Perform the univariate Cox proportional hazards regression analysis.

Description

Usage

Value

Arguments

Examples