samp_class_onco

datasets

A systematic bioinformatics tool to perform single-sample mutation-based pathway analysis by integrating somatic mutation data with the Protein-Protein Interaction (PPI) network. In this method, we use local and global weighted strategies to evaluate the effects of network genes from mutations according to the network topology and then calculate the mutation-based pathway enrichment score (ssMutPES) to reflect the accumulated effect of mutations of each pathway. Subsequently, the ssMutPES profiles are used for unsupervised spectral clustering to identify cancer subtypes.

Junwei Han

ssMutPA

Single-Sample Mutation-Based Pathway Analysis

Yalan He

Qian Wang

samp_class_onco function

<p>An object of class <code>integer</code> of length 44.</p>

Format

samp_class_onco — samp_class_onco

samp_class_onco: samp_class_onco

Description

Usage

Arguments

Format