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sscore (version 1.44.0)

S-Score Algorithm for Affymetrix Oligonucleotide Microarrays

Description

This package contains an implementation of the S-Score algorithm as described by Zhang et al (2002).

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Version

Version

1.44.0

License

GPL (>= 2)

Maintainer

Richard Kennedy

Last Published

February 15th, 2017

Functions in sscore (1.44.0)

SScoreBatch

Compute S-Score values
computeZoneIInfo

Compute zone background and noise
computeOutlier

Compute outlier probes
trimMean

Compute trimmed mean for a vector
computeAffxRawQ

Computes RawQ using affxparser routines
computeSFandSDT

Compute SF and SDT values
OneStepBiweightAlgorithm

One-step Tukey's biweight
computeZonenoise

Computes zone noise
computeRawQ

Computes RawQ
SScore

Compute S-Score values
computeAffxSFandSDT

Compute SF and SDT values using affxparser routines