name_plot_uncensored

Create an empirical cumulative distribution function ggplot with a name (i.e.
species names) associated to each observation.

Web application using 'shiny' for the SSD (Species
Sensitivity Distribution) module of the MOSAIC (MOdeling and
StAtistical tools for ecotoxICology) platform. It estimates the
Hazardous Concentration for x% of the species (HCx) from toxicity
values that can be censored and provides various plotting options for
a better understanding of the results. See our companion paper
Kon Kam King et al. (2014) <doi:10.48550/arXiv.1311.5772>.

Aurélie Siberchicot

ssd4mosaic

Web Application for the SSD Module of the MOSAIC Platform

Milena Kaag

Sandrine Charles

UMR5558 LBBE MEPS 

rhandsontable contributors 

name_plot_uncensored function

<dl><dt>fits</dt>
<dd>A list of fits of class <code>fitdist</code> or <code>fitdistcens</code>
computed from the same toxicity data.</dd>
<dt>unit</dt>
<dd>A character vector, the unit of the toxicity data</dd>
<dt>logscale</dt>
<dd>if <code>TRUE</code>, uses a logarithmic scale for the \(x\)-axis</dd>
<dt>data</dt>
<dd>A data.frame with column <code>conc</code> if uncensored data, with
<code>left</code> and <code>right</code> if censored data. In any case, must contain a
column <code>name</code>.</dd>
<dt>horizontals</dt>
<dd>If <code>TRUE</code>, draws horizontal lines for the step empirical 
 cumulative distribution function (ecdf). See also <code><a href="/link/plot.stepfun?package=ssd4mosaic&version=1.0.3" data-mini-rdoc="ssd4mosaic::plot.stepfun">plot.stepfun</a></code>.</dd></dl>

Arguments

Graphical representation of named toxicity uncensored data — name_plot_uncensored

<dl>

<dt>fits</dt>
<dd>A list of fits of class <code>fitdist</code> or <code>fitdistcens</code>
computed from the same toxicity data.</dd>


<dt>unit</dt>
<dd>A character vector, the unit of the toxicity data</dd>


<dt>logscale</dt>
<dd>if <code>TRUE</code>, uses a logarithmic scale for the \(x\)-axis</dd>


<dt>data</dt>
<dd>A data.frame with column <code>conc</code> if uncensored data, with
<code>left</code> and <code>right</code> if censored data. In any case, must contain a
column <code>name</code>.</dd>


<dt>horizontals</dt>
<dd>If <code>TRUE</code>, draws horizontal lines for the step empirical 
 cumulative distribution function (ecdf). See also <code><a href='https://rdrr.io/r/stats/plot.stepfun.html'>plot.stepfun</a></code>.</dd>

</dl>

name_plot_uncensored: Graphical representation of named toxicity uncensored data

Description

Usage

Value

Arguments