direction_matrix

This is data to be included in package

datasets

A method that inherits the standard gene set variation analysis (GSVA) method and also provides the option to use summary statistics from any analysis (disease vs healthy, lesional side vs nonlesional side, etc..) input to define the direction of gene sets used for directional gene set score calculation for a given disease. Note to use this package, GSVA(>= 1.52.1) is needed to pre-installed.
Hanzelmann, S., Castelo, R., and Guinney, J. (2013) <doi:10.1186/1471-2105-14-7>.

Xingpeng Li

ssdGSA

Single Sample Directional Gene Set Analysis

Qi Qian

direction_matrix function

An example direction matrix containing directionality information from summary statistics
such as effect size (ES) or p value, with each row for one gene.<dl>
<dt>gene</dt>
<dd>gene entrez ID</dd><dt>ES</dt>
<dd>effect size (SE) for this gene from summary statistics</dd><dt>pval</dt>
<dd>p value for this gene from summary statistics</dd>
</dl>

Format

This is data to be included in package — direction_matrix

An example direction matrix containing directionality information from summary statistics
such as effect size (ES) or p value, with each row for one gene.<dl>
<dt>gene</dt>
<dd>gene entrez ID</dd>

<dt>ES</dt>
<dd>effect size (SE) for this gene from summary statistics</dd>

<dt>pval</dt>
<dd>p value for this gene from summary statistics</dd>


</dl>

direction_matrix: This is data to be included in package

Description

Usage

Arguments

Format