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ssizeRNA (version 1.2.4)

Sample Size Calculation for RNA-Seq Experimental Design

Description

We propose a procedure for sample size calculation while controlling false discovery rate for RNA-seq experimental design. Our procedure depends on the Voom method proposed for RNA-seq data analysis by Law et al. (2014) and the sample size calculation method proposed for microarray experiments by Liu and Hwang (2007) . We develop a set of functions that calculates appropriate sample sizes for two-sample t-test for RNA-seq experiments with fixed or varied set of parameters. The outputs also contain a plot of power versus sample size, a table of power at different sample sizes, and a table of critical test values at different sample sizes. To install this package, please use 'source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'.

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install.packages('ssizeRNA')

Monthly Downloads

248

Version

1.2.4

License

GPL (>= 2)

Maintainer

Last Published

February 11th, 2016

Functions in ssizeRNA (1.2.4)