staRdom (version 1.1.28)

eempf_report: Create a html report of a PARAFAC analysis

Description

Create a html report of a PARAFAC analysis

Usage

eempf_report(
  pfmodel,
  export,
  eem_list = NULL,
  absorbance = NULL,
  meta = NULL,
  metacolumns = NULL,
  splithalf = FALSE,
  shmodel = NULL,
  performance = FALSE,
  residuals = FALSE,
  spp = 5,
  cores = parallel::detectCores(logical = FALSE),
  ...
)

Value

TRUE if report was created

Arguments

pfmodel

PARAFAC model

export

path to exported html file

eem_list

optional EEM data

absorbance

optional absorbance data

meta

optional meta data table

metacolumns

optional column names of metadata table

splithalf

optional logical, states whether split-half analysis should be included

shmodel

optional results from split-half analysis. If this data is not supplied but EEM data is available the split-half analysis is calculated on the creation of the report. Calculating the split-half analysis takes some time!

performance

calculating model performance: eempf_eemqual

residuals

logical, whether residuals are plotted in the report

spp

plots per page for loadgins and residuals plot

cores

cores to be used for the calculation

...

arguments to or from other functions

Examples

# \donttest{
folder <- system.file("extdata/EEMs", package = "staRdom") # load example data
eem_list <- eem_read(folder, recursive = TRUE, import_function = eem_csv)

abs_folder <- system.file("extdata/absorbance", package = "staRdom") # load example data
absorbance <- absorbance_read(abs_folder, cores = 2)

metatable <- system.file("extdata/metatable_dreem.csv",package = "staRdom")
meta <- read.table(metatable, header = TRUE, sep = ",", dec = ".", row.names = 1)

checked <- eem_checkdata(eem_list, absorbance, metadata = meta,
metacolumns = "dilution", error = FALSE)

eem_names(eem_list)
pfm <- A_missing(eem_list,pf4[[1]], cores = 2)
eempf_report(pfm, export = file.path(tempdir(),"pf_report.html"), eem_list = eem_list,
             absorbance = absorbance, meta = metatable, metacolumns = "dilution", cores = 2)

# }