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stability: Stability Analysis of Genotype by Environment Interaction (GEI)

Version : 0.5.0; Copyright (C) 2018-2024: License: GPL-2|GPL-3
Muhammad Yaseen1,2, and Kent M. Eskridge3
  1. School of Mathematical & Statistical Sciences, Clemson University, Clemson, South Carolina, USA

  2. Department of Mathematics and Statistics, University of Agriculture Faisalabad, Pakistan

  3. Department of Statistics, University of Nebraska Lincoln, NE, USA


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Description

Functionalities to perform Stability Analysis of Genotype by Environment Interaction (GEI) to identify superior and stable genotypes under diverse environments. It performs Eberhart & Russel’s ANOVA (1966) (<doi:10.2135/cropsci1966.0011183X000600010011x>), Finlay and Wilkinson (1963) Joint Linear Regression (<doi:10.1071/AR9630742>), Wricke (1962, 1964) Ecovalence, Shukla’s stability variance parameter (1972) (<doi:10.1038/hdy.1972.87>) and Kang’s (1991) (<doi:10.2134/agronj1991.00021962008300010037x](https://doi.org/10.2135/cropsci1966.0011183X000600010011x%3E), Finlay and Wilkinson (1963) Joint Linear Regression (doi:10.1071/AR9630742), Wricke (1962, 1964) Ecovalence, Shukla’s stability variance parameter (1972) (doi:10.1038/hdy.1972.87) and Kang’s (1991) (<doi:10.2134/agronj1991.00021962008300010037x)) simultaneous selection for high yielding and stable parameter.

Installation

The package can be installed from CRAN as follows:

install.packages("stability", dependencies = TRUE)

The development version can be installed from github as follows:

if (!require("remotes")) install.packages("remotes")
remotes::install_github("myaseen208/stability")

What’s new

To know whats new in this version type:

news(package = "stability")

Links

CRAN page

Github page

Documentation website

Citing stability

To cite the methods in the package use:

citation("stability")
To cite package 'stability' in publications use:

  Muhammad Yaseen, Kent M. Eskridge, Ghulam Murtaza (2018). _stability:
  Stability Analysis of Genotype by Environment Interaction (GEI)_. R
  package version 0.5.0,
  <https://CRAN.R-project.org/package=stability>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {stability: Stability Analysis of Genotype by Environment Interaction (GEI)},
    author = {{Muhammad Yaseen} and {Kent M. Eskridge} and {Ghulam Murtaza}},
    year = {2018},
    note = {R package version 0.5.0},
    url = {https://CRAN.R-project.org/package=stability},
  }

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Version

Install

install.packages('stability')

Monthly Downloads

321

Version

0.6.0

License

GPL-2

Maintainer

Muhammad Yaseen

Last Published

September 29th, 2024

Functions in stability (0.6.0)

stab_dist

Stability Distance in AMMI
stab_fox

Stability Fox Function
stability

Stability Analysis of Genotype by Environment Interaction (GEI)
stab_measures

Stability Measures for Genotypes by Environment Interaction (GEI)
stab_par

Stability Parameters for Genotypes by Environment Interaction (GEI)
stab_asv

Additive Main Effects and Multiplicative Interacion Stability Value
ammi_biplot

Additive Main Effects and Multiplicative Interaction (AMMI) Biplot
gge_biplot

Genotype plus Genotypes by Environment (GGE) Interaction Biplot
ge_data

Data for Genotypes by Environment Interaction (GEI)
er_anova

Eberhart & Russel’s Model ANOVA
ge_means

Genotype by Environment Interaction Means and Ranks
ammi

Additive Main Effects and Multiplicative Interaction (AMMI)
add_anova

Additive ANOVA for Genotypes by Environment Interaction (GEI) model
indiv_anova

Individual ANOVA for Each Environment
ge_effects

Genotype by Environment Interaction Effects
stab_kang

Stability Kang Function
stab_reg

Individual Regression for each Genotype
stab_masv

Modified Additive Main Effects and Multiplicative Interacion Stability Value