stacomiR v0.5.4.0

0

Monthly downloads

0th

Percentile

Fish Migration Monitoring

Graphical outputs and treatment for a database of fish pass monitoring. It is a part of the 'STACOMI' open source project developed in France by the French Agency for Biodiversity (AFB) institute to centralize data obtained by fish pass monitoring. This version is available in French and English. See <http://stacomir.r-forge.r-project.org/> for more information on 'STACOMI'.

Functions in stacomiR

Name Description
barplot,report_annual-method barplot method for object report_annual-class
charge,ref_df-method Loading method for DF referential objects
charge,ref_par-method Loading method for Repar referential objects
charge_with_filter,ref_taxa-method Loading method for ref_taxa referential objects searching only taxa existing for a DC
charge,ref_parqual-method Loading method for Reparqual referential objects
charge,report_mig_mult-method charge method for report_mig_mult
charge_with_filter,ref_stage-method Loading method for ref_stage referential objects searching only those stages existing for a DC and a Taxon
charge,report_ope-method charge method for report_ope
choice,ref_horodate-method Graphical interface
choice,ref_list-method Choice method for ref_list referential objects
calcule,report_mig_char-method Computes data to a standard format for the summary and plot methods.
choice,ref_stage-method Choice method for ref_stage referential objects
calcule,report_mig_env-method Calculations for migration in the class report_mig_env-class
charge,ref_choice-method Loading method for Rechoice referential objects
choice_c,ref_dc-method Command line interface to select a counting device
choice,ref_taxa-method Choice method for reftaxa referential objects with only one taxa selected
charge,ref_env-method Loading method for ref_env referential object
calcule,report_mig_mult-method #' Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel). This calculation is performed in a loop for all dc.
calcule,report_mig_interannual-method calcule method for report_mig_interannual
choice_c,ref_df-method Command line interface to choose a fishway
charge,ref_list-method Loading method for refliste referential objects
charge,ref_coe-method loads the coefficients for the period defined in class
choice_c,report_env-method command line interface for report_env class
choice_c,report_ge_weight-method command line interface for report_ge_weight-class
charge,ref_parquan-method Loading method for Reparquan referential objects
calcule,report_ge_weight-method Calcule method for report_ge_weight
charge,report_dc-method charge method for report_dc
charge,report_df-method charge method for report_df
charge Generic method to load referentials
calcule,report_mig-method Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel).
charge,ref_taxa-method Loading method for ref_taxa referential objects
charge,ref_stage-method Loading method for ref_stage referential objects
charge,ref_textbox-method Loading method for ReTextBox referential objects
calcule Generic method for calculations
charge_complement,ref_parqual-method Loads an additional dataset this method is loaded to obtain the possible values of a qualitative parameter. Here data only contains one line
charge,report_sample_char-method charge method for report_sample_char class
calcule,report_sample_char-method Calculation for report_sample_char
choicemult,ref_horodate-method Multiple Choice method for ref_horodate referential objects, to put together with notebook widgets
calcule,report_sea_age-method Split data according to the limits set in the limit1hm, and limit2hm arguments of the report_sea_age-class.
choice,ref_par-method Choice method for ref_par referential objects
choicemult,ref_par-method Multiple Choice method for ref_par referential objects, internal use
calcule,report_silver_eel-method Calculate individual silver eel parameters.
charge,ref_checkbox-method Loading method for ref_checkbox referential objects
connect,report_mig_interannual-method connect method for report_mig_interannual
connect,report_mig_env-method connect method for report_mig_env class
end_date Generic method for getting the final date
envir_stacomi Environment where most objects from the package are stored and then loaded by the charge method
calcule,report_species-method calcule method for report_species
charge,report_mig-method Loads additional data on migration control operations, df (fishway) dc (counting device).
charge,report_sea_age-method Loads data and check that all choices in the graphical interface have been made.
charge,ref_year-method Loading method for ref_year referential objects
charge,report_mig_env-method charge method for report_mig_env class
charge,report_mig_interannual-method loading method for report_mig_interannual class
fun_report_mig_mult Calculate daily migration by simple repartition
fun_report_mig_mult_overlaps Function to calculate daily migration using overlaps functions
charge,report_silver_eel-method charge method for report_silver_eel class
chargecsv chargecsv loads the informations stored in c:/program files/stacomi/calcmig.csv file
funbarchartDC Function to create a barchart (lattice) corresponding to the periods
choice,ref_checkbox-method Choice method for ref_checkbox referential objects
funbarchartDF Handler for barchart for report_df class from the graphical interface
charge,report_mig_char-method charge method for report_mig_char
charge_with_filter,ref_parqual-method Loading method for Reparqual referential objects searching only those parameters existing for a DC, a Taxon, and a stage
charge_with_filter,ref_parquan-method Loading method for Reparquan referential objects searching only those parameters existing for a DC, a Taxon, and a stage
choice,ref_parqual-method Choice method for ref_parqual referential objects, internal use
charge,report_species-method charge method for report_species
charge_with_filter Generic method to load referentials, with filters from the parent object in the database
choice,ref_timestep_daily-method Method to select timesteps from the graphical interface
chargecomplement-methods Methods for Function chargecomplement
choice,ref_textbox-method Choice method for ReTextBox referential objects
choice,ref_year-method choice method for ref_year referential
choice_c,ref_stage-method choice_c method for ref_stage
choice,ref_choice-method Choice method for Rechoice referential objects
choice,ref_dc-method Graphical method to choose a fishway through the interface
funstat Function to calculate statistics per month
funstat_daily function to create daily statistics
choice_c,ref_year-method choice_c method for ref_year referential from the command line
get_step_label Generic method to get the string value of time step
get_year,ref_timestep-method Gets the year or a vector of years corresponding to the timestep ("ref_timestep") object
charge,report_annual-method charge method for report_annual class
choice_c,ref_taxa-method choice_c method for ref_taxa
getdateDebut Generic method the get starting date
choice_c,report_mig-method command line interface for report_mig class
charge,report_env-method charge method for report_env class
getdbname Retrieves the dbname from a connection using "baseODBC"
charge,report_ge_weight-method charge method for report_ge_weight class
choice_c,report_annual-method command line interface for report_annual-class
h_report_mig handler function used by the main interface
choice_c,ref_list-method Choice_c method for ref_list referential objects
choice_c,ref_par-method Command line interface to select a parameter
choice_c,report_mig_char-method command line interface for report_mig_char class
h_report_mig_annual handler function used by the main interface
choice_c,report_df-method command line interface for report_df class
choice_c,report_dc-method command line interface for report_dc class
choice_c,report_sea_age-method command line interface for report_sea_age class
choice_c,report_silver_eel-method command line interface for report_silver_eel class
h_report_mig_multgraph2 handler du calcul h_report_miggraph2
h_report_mig_multgraph3 handler
charge_complement Generic method to load additional data
choice,ref_timestep-method Method to select timesteps from the graphical interface
choice_c,ref_textbox-method Choice_c method for ReTextBox referential objects
choice_c,report_sample_char-method command line interface for report_sample_char class
h_report_silver handler function used by the main interface
choice_c,report_mig_mult-method command line interface for report_mig_mult class
h_report_size handler function used by the main interface
charge_with_filter,ref_par-method Loading method for Repar referential objects searching only those parameters existing for a DC, a Taxa, and a stage
hgraph_report_mig_interannual Plot of all interannual from top to bottom
choicemult,ref_parqual-method Multiple Choice method for ref_parqual referential objects internal use
connect,report_sample_char-method connect method for report_sample_char
choicemult,ref_stage-method Multiple Choice method for ref_stage referential objects
choice_c,ref_timestep_daily-method choice_c method for class ref_timestep_daily
choice_c,report_species-method command line interface for report_species-class
choice_c,report_mig_env-method command line interface for report_env class
choice_c,report_mig_interannual-method command line interface for report_mig_interannual class
choicemult,ref_dc-method choicemult, selection method for ref_dc allowing to select several DC
connect,report_mig_mult-method connect method for report_mig_mult
choicemult,ref_timestep-method Graphical interface for multiple choice method for PasdeTemps (used in report_mig_mult)
choicemult,ref_choice-method Multiple Choice method for ref_choice referential objects, to put together with notebook widgets
choicemult,ref_taxa-method Multiple Choice method for reftaxa referential objects, the graphical interface is built to allow for multiple choices. See load for method in the command line.
connect,report_dc-method connect method for report_dc
choice_c Generic method for manual choice using the command line
connect,report_sea_age-method connect method for report_sea_age
hgraph_report_mig_interannual2 Plot of daily migrations
connect,report_df-method connect method for report_df
houtDC handler to print the command line
colortable Builds a table with colors to merge with a dataframe for later use in ggplot. An initial check will be done on the name of the color vector. A data frame is built. It contains a column color which is a factor. The factor order match the order of the vector (not the alphabetical order of the colors).
connect,report_ope-method connect method for report_ope
houtDF handler to print the command line
currentstart_date Generic method for getting the beginning date for current time step
choice,ref_df-method Graphical method to choose a fishway through the interface
fun_report_mig_interannual statistics per time period
connect,report_env-method connect method for report_env class
fun_date_extraction This function extracts temporal characteristics from a dataframe
connect,report_ge_weight-method connect method for report_Poids_moyen
end_date,ref_timestep-method Gets the final horodate for an object of class ref_timestep-class
connect,report_annual-method connect method for report_annual class this method performs the sum over the year attention this function does not count subsamples.
choice,ref_env-method Choice method for ref_env referential object
connect,report_mig-method connect method for report_mig
interface_report_annual interface for report_annual class
connect,report_silver_eel-method connect method for report_silver_eel
connect,report_species-method connect method for report_species
funbarchart1DC Handler for barchart for report_df class from the graphical interface
choice Generic method for choice (using the gwidget graphical interface)
funbarchart1DF Handler for barchart for report_df class from the graphical interface
connect,report_mig_char-method connect method for report_mig_char
funchartDF Handler function to plot calendar like graph, internal use
fungraph Function for report_mig graphs including numbers DF DC operations
createmessage Generic method to forward outputs
fun_weight_conversion returns a table where weights and number are calculated from number and weights respectively performs a query to collect the conversion coefficients
interface_report_dc interface for report_dc class
fun_write_monthly This writes monthly data in t_reportmensuel_mens table
current_end_date,ref_timestep-method Gets the ending date of a time step for an object of class ref_timestep-class
fun_stage_durif Function to calculate the stages from Durif
fungraph_glasseel Graph function for glass eel migration. Differs from fungraph as it does not draw the ggplot graph for month
fun_table_per_dis functions called in DF and DC
choice_c,ref_choice-method Choice_c method for refchoix referential objects
funtable function to print and save statistics in .csv and .html formats for report_mig and report_mig_mult class
interface_report_mig_interannual interface for report_mig_interannual class
funboxDC function used for some lattice graph
hTablereport_mig handler for summary function, internal use calls functions funstat and funtable to build summary tables in html and csv files
funboxDF Internal use, rectangles to describe the DF work for report_df class, graphical interface handler
funtablereport_sample_char table function
fundensityreport_sample_char fundensityreport_sample_char uses ggplot2 to draw density plots
funout this function uses gfile, edits a text with info and changing colors
funplotreport_sea_age funplotreport_sea_age
interface_report_mig_mult graphical interface for report_mig_mult class
funtableDF Table output for report_df class
hTablereport_mig_mult handler function table
choice_c,ref_env-method Command line interface to select a monitoring station
funtablereport_ge_weight Internal handler for reg, class report_ge_weight-class.
funtableDC FuntableDC create a table output for report_dc class
funtablereport_silver_eel table function
h_report_mig_mult_graph handler for plot method in report_mig_mult class
h_report_mig_char handler function used by the main interface
getnocurrent_step,ref_timestep-method Gets the current time step of an object of class ref_timestep-class
get_step_label,ref_timestep-method Gets the string value of time step
h_report_mig_multcalc handler for calculations
choice_c,ref_horodate-method Command line
getnocurrent_step Generic method to get current time step
choicemult Generic method for multiple choice (using the gwidget notebook for multiple choice)
graphdate function used for some lattice graphs with dates
h_report_sea_age handler function used by the main interface
hbmCplotcrossed handler for plot
h_report_mig_env handler function used by the main interface
h_report_sample_char handler function used by the main interface
funtablereport_sea_age table function
h_report_mig_interannual handler function used by the main interface
graphe-methods Methods for Function graphe
h_report_envgraph h_report_envgraph Internal method
coef_durif Silvering index coefficients from Caroline Durif (2009) to predict silvering stage from morphological parameters
h_report_dc handler function used by the main interface
h_report_df handler function used by the main interface
plot,report_env,missing-method Plot method for report_env
h_report_mig_mult handler function used by the main interface
h_report_ge_weight handler function used by the main interface
h_report_ope handler function used by the main interface
h_report_miggraph2 handler for h_report_miggraph2
hbilespcalc handler for calculation
hbmCplotqual handler for plot
current_end_date Generic method for getting the ending date for current time step
h_report_pigment_stages handler function used by the main interface
hgraph_report_mig_interannual4 Plot comparing the migration to the migration computed for all years available in the daily migration table. This function plots comparisons for periods of 1 week, 2 weeks, month
hgraph_report_mig_interannual3 Step plot with different years displayed on the same graph. One year can be highlighted against the others
plot,report_ge_weight,missing-method Plot method for report_ge_weight'
h_report_migwrite handler h_report_migwrite Allows the saving of daily and monthly counts in the database
hbmCcalc handler for report_mig_char
interface_report_mig_char interface for report_migPar class
hcalc Internal handler for reg, class report_ge_weight-class.
currentstart_date,ref_timestep-method Gets the starting date of a time step for an object of class ref_timestep-class
fun_aggreg_for_plot returns a table where all components within the list calcdata are aggregated and formatted for plot
fun_char_spe function used to remove special non utf8 character which cause the gtk interface to crash
hbmmCEcalc Internal handler function
interface_report_mig_env interface for report_migConditionEnv class
funboxplotreport_sample_char Boxplots for ggplot2
funchartDC Handler function to plot calendar like graph, internal use
plot,report_mig_interannual,missing-method Plot method for report_mig_interannual
funplotreport_silver_eel funplotreport_silver_eel
plot,report_species,missing-method Plot method for report_species
print,report_dc-method Method to print the command line of the object
hbmCplotquan handler for plot
r_ann Annual migration of yellow and silver eel for three fishways / counting devices at the Arzal dam (data from 1995 to 2016)
hbmmCEgraph internal method for graphical interface
print,report_mig_mult-method Method to print the command line of the object
plot,report_mig_env,missing-method Plot method for report_mig_env
hexp Internal handler for reg, class report_ge_weight-class.
houtreport_mig handler to print the command line
houtreport_mig_mult handler to print the command line
r_ann_adour Annual migration of salmon in the Adour and tributaries
funpointreport_sample_char Point graph from ggplot
r_mig_env An object of class report_mig_env with data loaded
get_year Generic method to get the years
hxtablereport_annual xtable handler
hgraph_report_mig_interannual5 Function displaying comparison similar to hgraph_report_mig_interannual4 but using pointrange and geom_bar This function plots comparisons for periods of 1 week, 2 weeks, month
interface_graphique Program launch, this function launches the GwidgetRgtk graphical interface to stacomi. To be able to run, some widgets (win, grouptotal, group...) are assigned in the user environment .GlobalEnv.
interface_report_silver_eel An interface that calls the object to build the user interface
print,report_sample_char-method Method to print the command line of the object
hbmCstat This handler calls the generic method stat
r_mig_dc Counting device operation for the video recording (Arzal dam, Vilaine, France).
interface_report_species Interface for report_species class
hgraph_report_mig_interannual7 This function creates a cumulated area plot to highlight seasonal trends in migration. Data are calculated by 2 weeks period then centered and reduced
hplot Internal handler for reg, class report_ge_weight-class.
r_mig_interannual Daily glass eel and elver migration from 1984 to 2016 in the Sevre Niortaise
interface_report_df interface for report_df class
getdateDebut,ref_timestep-method Returns the starting date as character
r_mig_mult_ope Counting operations for three different counting device in Arzal (Vilaine, France)
hplotbilesp handler for plot internal use
interface_report_env Interface for class conditionEnv
hsummarybilesp handler for summary report_species, internal use
r_mig_ope An object of class report_ope-class with data loaded
ref_parqual-class Class "ref_parqual"
getvalue,ref_period-method Returns the POSIXt value of a given name
getvalue Generic method getvalue
load_stacomi Internal function, tests the connection and if it works loads the stacomi interface
plot,report_mig,ANY-method Plots of various type for report_mig.
h_report_dfdc handler function used by the main interface
plot,report_mig_char,missing-method plot method for report_mig_char
r_mig_df Fishway operation for the vertical slot fishway (Arzal dam, Vilaine, France).
h_report_env handler function used by the main interface
ref_parquan-class Class "ref_parquan"
report_ope-class Report on operations
ref_timestep_daily-class Class "ref_timestep_daily"
hsummaryreport_migInterannuelle Summary handler internal method
ref_year-class Year reference class
report_sample_char-class Class "report_sample_char"
report_mig_char-class Migration report along with quantitative and qualitative characteristics
plot,report_sea_age,missing-method Plots of various type for report_sea_age
plot,report_silver_eel,missing-method Plots of various type for report_silver_eel
setasqualitative Generic method to transform quantitative par into a qualitative one
h_report_migcalc handler for calculations report_mig
model,report_ge_weight-method model method for report_ge_weight' this method uses samples collected over the season to model the variation in weight of glass eel or yellow eels.
report_mig_env-class Class "report_mig_env"
interface_report_ge_weight interface for report_ge_weight class
h_report_miggraph handler for h_report_miggraph
set_starting_date Generic method to set the starting date
setasqualitative,report_mig_char-method Turns a quantitative parameter into qualitative
summary,report_mig-method summary for report_mig calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
progress_bar Progress bar using a gtkdialog, the progress bar is assigned in envir_stacomi This progress bar has a button to close.
interface_report_mig Interface for report_mig class, internal use, this function is called by a handler in the main graphical interface
setref_horodate,ref_horodate-method Method to set the Horodate
plot,report_dc,ANY-method Different plots for report_dc
plot,report_df,ANY-method Different plots for report_df
h_report_species handler function used by the main interface
plot,report_mig_mult,missing-method Plots of various type for report_mig_mult
hbarplotreport_annual Barplot handler
hplotreport_annual plot handler
quitte function used to clean the objects within the group and the graphs and also elements remaining in the envir_stacomi environment
hreg Internal handler for reg, class report_ge_weight-class.
r_mig_interannual_vichy Seasonality of salmon migration at the Vichy counting station (Loire)
plot,report_sample_char,missing-method Plots of various type for reportcarlot
r_mig_mult Anguilla migration at the Arzal station (report_mig_mult-class)
r_sample_char Size of yellow and glass eel at the Arzal dam (Vilaine, France) in the fishway and main eel trapping ladder.
summary,report_mig_char-method summary for report_mig_char
summary,report_mig_interannual-method summary for report_mig_interannual provides summary statistics for the latest year (if silent=TRUE), or the year selected in the interface, if silent=FALSE. Mean, min and max are historical statistics with the selected year excluded from the historical dataset.
r_silver Silver eel migration in the Somme
summary,report_mig_mult-method summary for report_mig_mult calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
r_seaa An object of class report_sea_age with data loaded
ref_checkbox-class ref_checkbox referencial class
supprime,ref_coe-method supprime method for "ref_coe" class
interface_report_sea_age An interface that calls the object to build the user interface
interface_report_sample_char An interface that calls the object to build the user interface
print,report_sea_age-method Method to print the command line of the object
ref_dc-class Class "ref_dc"
validity_ref_horodate Validity check for ref_horodate
print,report_silver_eel-method Method to print the command line of the object
ref_df-class Class "ref_df"
model Generic for prediction
plot,report_annual,missing-method Plot method for report_annual
validity_year Validity check for ref_year
supprime,report_mig_interannual-method supprime method for report_mig_interannual class
print,report_df-method Method to print the command line of the object
r_env An object of class report_env with data loaded
xtable,report_mig_char-method xtable function for report_mig_char-class create an xtable objet to be later used by the print.xtable method.
ref_taxa-class Class "ref_taxa"
print,report_mig-method Method to print the command line of the object
ref_textbox-class ref_textbox referencial class
split_per_day Create a dataframe suitable for charts per 24h and day
ref_list-class Class "ref_list"
r_dc Counting Device (DC) operation from 2000 to 2015 at the Arzal dam (Vilaine, France)
r_mig Video counting of thin lipped mullet (Liza ramada) in 2015 in the Vilaine (France)
r_mig_char Qualitative and quantitative parameters describing Salmon migration at Decize (Loire)
r_mig_mult_dc Counting device operation for three different counting device in Arzal (Vilaine, France)
r_df Overview of the fishway operation at Arzal in (Vilaine France).
ref_par-class Class "ref_par"
report_annual-class Class "report_annual"
r_mig_mult_df Fishway operation at the Arzal Dam (Vilaine France) (3 Fishways in 2011)
ref_period-class Class "ref_period" referential class
r_gew Wet weight of glass eel from the trapping ladder (Arzal, Vilaine France)
ref_stage-class Class "ref_stage"
report_df-class Report on fishway operation
report_env-class class report_env simple output of one or several environmental conditions...
ref_choice-class Class "ref_choice"
ref_coe-class Class "ref_coe"
stacomi Function that loads the loginwindow, tests connection, and then destroys the window
report_species-class Counts of number per taxa/stages
report_mig_mult-class Migration reports for multiple DC / species / stages
report_mig_interannual-class Class "report_mig_interannual"
ref_env-class Class "ref_env"
ref_horodate-class Class ref_horodate
set_starting_date,ref_timestep-method Sets starting date from a character
summary,report_silver_eel-method summary for report_silver_eel
ref_timestep-class Class "ref_timestep"
summary,report_sample_char-method summary for report_sample_char
summary,report_sea_age-method summary for report_sea_age
summary,report_species-method summary for report_species generate csv and html output in the user data directory
ref_timestepChar-class Class "ref_timestepChar"
supprime,report_sea_age-method supprime method for report_mig_interannual class
write_database Generic method write_database
supprime Generic method to delete entires from the database
report_silver_eel-class Class "report_silver_eel"
write_database,report_mig-method Command line method to write the daily and monthly counts to the t_bilanmigrationjournalier_bjo table
write_database,report_sea_age-method Command line method to write the characteristic "sea age" (car_par_code='A124') into the tj_caracteristiquelot_car table in the user's scheme
report_sea_age-class Class "report_sea_age"
report_dc-class Class "report_dc" report du fonctionnement du dispositif de comptage
report_ge_weight-class Trend of wet weight in glass eel
xtable,report_annual-method xtable function for report_annual-class create an xtable objet but also assigns an add.to.column argument in envir_stacomi, for later use by the print.xtable method.
report_mig-class Migration report for one DC, one species and one stage
stacomiR-package stacomiR
stacomi_installed Test that the program is installed.
summary,report_dc-method summary for report_dc, write csv and html output, and prints summary statistics
summary,report_df-method summary for report_df, write csv and html output, and prints summary statistics
vector_to_listsql Transforms a vector into a string called within an sql command e.g. c('A','B','C') => in ('A','B','C')
write_database,report_ge_weight-method Function to write data to the stacomi database for report_ge_weight-class
charge,ref_dc-method Method to load the counting devices of the control station
calcmig A data frame containing the default connection arguments. The program will use a file installed in c:/program files/stacomi but if not found will switch to this default value
No Results!

Vignettes of stacomiR

Name
stacomir.Rmd
No Results!

Last month downloads

Details

Date 2018-09-24
License GPL (>= 2)
URL http://stacomir.r-forge.r-project.org/
BugReports https://github.com/MarionLegrandLogrami/stacomiR/issues
Collate 'create_generic.R' 'data.R' 'fun_table_per_dis.R' 'fun_write_monthly.R' 'fungraph.R' 'fungraph_glasseel.R' 'funstat.R' 'funstat_daily.R' 'funtable.R' 'interface_report_annual.R' 'interface_report_dc.R' 'interface_report_df.R' 'interface_report_env.R' 'interface_report_ge_weight.R' 'interface_report_mig.R' 'interface_report_mig_char.R' 'interface_report_mig_env.R' 'interface_report_mig_interannual.R' 'interface_report_mig_mult.R' 'interface_report_sample_char.R' 'interface_report_sea_age.R' 'interface_report_silver_eel.R' 'interface_report_species.R' 'ref_checkbox.R' 'ref_choice.R' 'ref_coe.R' 'ref_dc.R' 'ref_df.R' 'ref_env.R' 'ref_horodate.R' 'ref_list.R' 'ref_par.R' 'ref_parqual.R' 'ref_parquan.R' 'ref_period.R' 'ref_stage.R' 'ref_taxa.R' 'ref_textbox.R' 'ref_timestep.R' 'ref_timestep_daily.R' 'ref_year.R' 'report_annual.R' 'report_dc.R' 'report_df.R' 'utilities.R' 'report_env.R' 'report_ge_weight.R' 'report_ope.R' 'report_mig.R' 'report_sample_char.R' 'report_mig_char.R' 'report_mig_mult.R' 'report_mig_env.R' 'report_mig_interannual.R' 'report_sea_age.R' 'report_silver_eel.R' 'report_species.R' 'setAs.R' 'stacomi.R'
LazyLoad yes
LazyData true
RoxygenNote 6.1.0.9000
NeedsCompilation no
VignetteBuilder knitr
Repository CRAN
Repository/R-Forge/Project stacomir
Repository/R-Forge/Revision 544
Repository/R-Forge/DateTimeStamp 2018-10-11 13:39:57
Date/Publication 2018-10-11 15:10:03 UTC
Packaged 2018-10-11 13:50:38 UTC; rforge

Include our badge in your README

[![Rdoc](http://www.rdocumentation.org/badges/version/stacomiR)](http://www.rdocumentation.org/packages/stacomiR)