stacomiR v0.5.4.0

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by Cedric Briand View Source

Fish Migration Monitoring

Graphical outputs and treatment for a database of fish pass monitoring. It is a part of the 'STACOMI' open source project developed in France by the French Agency for Biodiversity (AFB) institute to centralize data obtained by fish pass monitoring. This version is available in French and English. See <http://stacomir.r-forge.r-project.org/> for more information on 'STACOMI'.

Functions in stacomiR

Name	Description
barplot,report_annual-method	barplot method for object report_annual-class
charge,ref_df-method	Loading method for DF referential objects
charge,ref_par-method	Loading method for Repar referential objects
charge_with_filter,ref_taxa-method	Loading method for ref_taxa referential objects searching only taxa existing for a DC
charge,ref_parqual-method	Loading method for Reparqual referential objects
charge,report_mig_mult-method	charge method for report_mig_mult
charge_with_filter,ref_stage-method	Loading method for ref_stage referential objects searching only those stages existing for a DC and a Taxon
charge,report_ope-method	charge method for report_ope
choice,ref_horodate-method	Graphical interface
choice,ref_list-method	Choice method for ref_list referential objects
calcule,report_mig_char-method	Computes data to a standard format for the summary and plot methods.
choice,ref_stage-method	Choice method for ref_stage referential objects
calcule,report_mig_env-method	Calculations for migration in the class report_mig_env-class
charge,ref_choice-method	Loading method for Rechoice referential objects
choice_c,ref_dc-method	Command line interface to select a counting device
choice,ref_taxa-method	Choice method for reftaxa referential objects with only one taxa selected
charge,ref_env-method	Loading method for ref_env referential object
calcule,report_mig_mult-method	#' Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel). This calculation is performed in a loop for all dc.
calcule,report_mig_interannual-method	calcule method for report_mig_interannual
choice_c,ref_df-method	Command line interface to choose a fishway
charge,ref_list-method	Loading method for refliste referential objects
charge,ref_coe-method	loads the coefficients for the period defined in class
choice_c,report_env-method	command line interface for report_env class
choice_c,report_ge_weight-method	command line interface for report_ge_weight-class
charge,ref_parquan-method	Loading method for Reparquan referential objects
calcule,report_ge_weight-method	Calcule method for report_ge_weight
charge,report_dc-method	charge method for report_dc
charge,report_df-method	charge method for report_df
charge	Generic method to load referentials
calcule,report_mig-method	Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel).
charge,ref_taxa-method	Loading method for ref_taxa referential objects
charge,ref_stage-method	Loading method for ref_stage referential objects
charge,ref_textbox-method	Loading method for ReTextBox referential objects
calcule	Generic method for calculations
charge_complement,ref_parqual-method	Loads an additional dataset this method is loaded to obtain the possible values of a qualitative parameter. Here data only contains one line
charge,report_sample_char-method	charge method for report_sample_char class
calcule,report_sample_char-method	Calculation for report_sample_char
choicemult,ref_horodate-method	Multiple Choice method for ref_horodate referential objects, to put together with notebook widgets
calcule,report_sea_age-method	Split data according to the limits set in the limit1hm, and limit2hm arguments of the report_sea_age-class.
choice,ref_par-method	Choice method for ref_par referential objects
choicemult,ref_par-method	Multiple Choice method for ref_par referential objects, internal use
calcule,report_silver_eel-method	Calculate individual silver eel parameters.
charge,ref_checkbox-method	Loading method for ref_checkbox referential objects
connect,report_mig_interannual-method	connect method for report_mig_interannual
connect,report_mig_env-method	connect method for report_mig_env class
end_date	Generic method for getting the final date
envir_stacomi	Environment where most objects from the package are stored and then loaded by the charge method
calcule,report_species-method	calcule method for report_species
charge,report_mig-method	Loads additional data on migration control operations, df (fishway) dc (counting device).
charge,report_sea_age-method	Loads data and check that all choices in the graphical interface have been made.
charge,ref_year-method	Loading method for ref_year referential objects
charge,report_mig_env-method	charge method for report_mig_env class
charge,report_mig_interannual-method	loading method for report_mig_interannual class
fun_report_mig_mult	Calculate daily migration by simple repartition
fun_report_mig_mult_overlaps	Function to calculate daily migration using overlaps functions
charge,report_silver_eel-method	charge method for report_silver_eel class
chargecsv	chargecsv loads the informations stored in c:/program files/stacomi/calcmig.csv file
funbarchartDC	Function to create a barchart (lattice) corresponding to the periods
choice,ref_checkbox-method	Choice method for ref_checkbox referential objects
funbarchartDF	Handler for barchart for report_df class from the graphical interface
charge,report_mig_char-method	charge method for report_mig_char
charge_with_filter,ref_parqual-method	Loading method for Reparqual referential objects searching only those parameters existing for a DC, a Taxon, and a stage
charge_with_filter,ref_parquan-method	Loading method for Reparquan referential objects searching only those parameters existing for a DC, a Taxon, and a stage
choice,ref_parqual-method	Choice method for ref_parqual referential objects, internal use
charge,report_species-method	charge method for report_species
charge_with_filter	Generic method to load referentials, with filters from the parent object in the database
choice,ref_timestep_daily-method	Method to select timesteps from the graphical interface
chargecomplement-methods	Methods for Function chargecomplement
choice,ref_textbox-method	Choice method for ReTextBox referential objects
choice,ref_year-method	choice method for ref_year referential
choice_c,ref_stage-method	choice_c method for ref_stage
choice,ref_choice-method	Choice method for Rechoice referential objects
choice,ref_dc-method	Graphical method to choose a fishway through the interface
funstat	Function to calculate statistics per month
funstat_daily	function to create daily statistics
choice_c,ref_year-method	choice_c method for ref_year referential from the command line
get_step_label	Generic method to get the string value of time step
get_year,ref_timestep-method	Gets the year or a vector of years corresponding to the timestep ("ref_timestep") object
charge,report_annual-method	charge method for report_annual class
choice_c,ref_taxa-method	choice_c method for ref_taxa
getdateDebut	Generic method the get starting date
choice_c,report_mig-method	command line interface for report_mig class
charge,report_env-method	charge method for report_env class
getdbname	Retrieves the dbname from a connection using "baseODBC"
charge,report_ge_weight-method	charge method for report_ge_weight class
choice_c,report_annual-method	command line interface for report_annual-class
h_report_mig	handler function used by the main interface
choice_c,ref_list-method	Choice_c method for ref_list referential objects
choice_c,ref_par-method	Command line interface to select a parameter
choice_c,report_mig_char-method	command line interface for report_mig_char class
h_report_mig_annual	handler function used by the main interface
choice_c,report_df-method	command line interface for report_df class
choice_c,report_dc-method	command line interface for report_dc class
choice_c,report_sea_age-method	command line interface for report_sea_age class
choice_c,report_silver_eel-method	command line interface for report_silver_eel class
h_report_mig_multgraph2	handler du calcul h_report_miggraph2
h_report_mig_multgraph3	handler
charge_complement	Generic method to load additional data
choice,ref_timestep-method	Method to select timesteps from the graphical interface
choice_c,ref_textbox-method	Choice_c method for ReTextBox referential objects
choice_c,report_sample_char-method	command line interface for report_sample_char class
h_report_silver	handler function used by the main interface
choice_c,report_mig_mult-method	command line interface for report_mig_mult class
h_report_size	handler function used by the main interface
charge_with_filter,ref_par-method	Loading method for Repar referential objects searching only those parameters existing for a DC, a Taxa, and a stage
hgraph_report_mig_interannual	Plot of all interannual from top to bottom
choicemult,ref_parqual-method	Multiple Choice method for ref_parqual referential objects internal use
connect,report_sample_char-method	connect method for report_sample_char
choicemult,ref_stage-method	Multiple Choice method for ref_stage referential objects
choice_c,ref_timestep_daily-method	choice_c method for class ref_timestep_daily
choice_c,report_species-method	command line interface for report_species-class
choice_c,report_mig_env-method	command line interface for report_env class
choice_c,report_mig_interannual-method	command line interface for report_mig_interannual class
choicemult,ref_dc-method	choicemult, selection method for ref_dc allowing to select several DC
connect,report_mig_mult-method	connect method for report_mig_mult
choicemult,ref_timestep-method	Graphical interface for multiple choice method for PasdeTemps (used in report_mig_mult)
choicemult,ref_choice-method	Multiple Choice method for ref_choice referential objects, to put together with notebook widgets
choicemult,ref_taxa-method	Multiple Choice method for reftaxa referential objects, the graphical interface is built to allow for multiple choices. See load for method in the command line.
connect,report_dc-method	connect method for report_dc
choice_c	Generic method for manual choice using the command line
connect,report_sea_age-method	connect method for report_sea_age
hgraph_report_mig_interannual2	Plot of daily migrations
connect,report_df-method	connect method for report_df
houtDC	handler to print the command line
colortable	Builds a table with colors to merge with a dataframe for later use in ggplot. An initial check will be done on the name of the color vector. A data frame is built. It contains a column color which is a factor. The factor order match the order of the vector (not the alphabetical order of the colors).
connect,report_ope-method	connect method for report_ope
houtDF	handler to print the command line
currentstart_date	Generic method for getting the beginning date for current time step
choice,ref_df-method	Graphical method to choose a fishway through the interface
fun_report_mig_interannual	statistics per time period
connect,report_env-method	connect method for report_env class
fun_date_extraction	This function extracts temporal characteristics from a dataframe
connect,report_ge_weight-method	connect method for report_Poids_moyen
end_date,ref_timestep-method	Gets the final horodate for an object of class ref_timestep-class
connect,report_annual-method	connect method for report_annual class this method performs the sum over the year attention this function does not count subsamples.
choice,ref_env-method	Choice method for ref_env referential object
connect,report_mig-method	connect method for report_mig
interface_report_annual	interface for report_annual class
connect,report_silver_eel-method	connect method for report_silver_eel
connect,report_species-method	connect method for report_species
funbarchart1DC	Handler for barchart for report_df class from the graphical interface
choice	Generic method for choice (using the gwidget graphical interface)
funbarchart1DF	Handler for barchart for report_df class from the graphical interface
connect,report_mig_char-method	connect method for report_mig_char
funchartDF	Handler function to plot calendar like graph, internal use
fungraph	Function for report_mig graphs including numbers DF DC operations
createmessage	Generic method to forward outputs
fun_weight_conversion	returns a table where weights and number are calculated from number and weights respectively performs a query to collect the conversion coefficients
interface_report_dc	interface for report_dc class
fun_write_monthly	This writes monthly data in t_reportmensuel_mens table
current_end_date,ref_timestep-method	Gets the ending date of a time step for an object of class ref_timestep-class
fun_stage_durif	Function to calculate the stages from Durif
fungraph_glasseel	Graph function for glass eel migration. Differs from fungraph as it does not draw the ggplot graph for month
fun_table_per_dis	functions called in DF and DC
choice_c,ref_choice-method	Choice_c method for refchoix referential objects
funtable	function to print and save statistics in .csv and .html formats for report_mig and report_mig_mult class
interface_report_mig_interannual	interface for report_mig_interannual class
funboxDC	function used for some lattice graph
hTablereport_mig	handler for summary function, internal use calls functions funstat and funtable to build summary tables in html and csv files
funboxDF	Internal use, rectangles to describe the DF work for report_df class, graphical interface handler
funtablereport_sample_char	table function
fundensityreport_sample_char	fundensityreport_sample_char uses ggplot2 to draw density plots
funout	this function uses gfile, edits a text with info and changing colors
funplotreport_sea_age	funplotreport_sea_age
interface_report_mig_mult	graphical interface for report_mig_mult class
funtableDF	Table output for report_df class
hTablereport_mig_mult	handler function table
choice_c,ref_env-method	Command line interface to select a monitoring station
funtablereport_ge_weight	Internal handler for reg, class report_ge_weight-class.
funtableDC	FuntableDC create a table output for report_dc class
funtablereport_silver_eel	table function
h_report_mig_mult_graph	handler for plot method in report_mig_mult class
h_report_mig_char	handler function used by the main interface
getnocurrent_step,ref_timestep-method	Gets the current time step of an object of class ref_timestep-class
get_step_label,ref_timestep-method	Gets the string value of time step
h_report_mig_multcalc	handler for calculations
choice_c,ref_horodate-method	Command line
getnocurrent_step	Generic method to get current time step
choicemult	Generic method for multiple choice (using the gwidget notebook for multiple choice)
graphdate	function used for some lattice graphs with dates
h_report_sea_age	handler function used by the main interface
hbmCplotcrossed	handler for plot
h_report_mig_env	handler function used by the main interface
h_report_sample_char	handler function used by the main interface
funtablereport_sea_age	table function
h_report_mig_interannual	handler function used by the main interface
graphe-methods	Methods for Function graphe
h_report_envgraph	h_report_envgraph Internal method
coef_durif	Silvering index coefficients from Caroline Durif (2009) to predict silvering stage from morphological parameters
h_report_dc	handler function used by the main interface
h_report_df	handler function used by the main interface
plot,report_env,missing-method	Plot method for report_env
h_report_mig_mult	handler function used by the main interface
h_report_ge_weight	handler function used by the main interface
h_report_ope	handler function used by the main interface
h_report_miggraph2	handler for h_report_miggraph2
hbilespcalc	handler for calculation
hbmCplotqual	handler for plot
current_end_date	Generic method for getting the ending date for current time step
h_report_pigment_stages	handler function used by the main interface
hgraph_report_mig_interannual4	Plot comparing the migration to the migration computed for all years available in the daily migration table. This function plots comparisons for periods of 1 week, 2 weeks, month
hgraph_report_mig_interannual3	Step plot with different years displayed on the same graph. One year can be highlighted against the others
plot,report_ge_weight,missing-method	Plot method for report_ge_weight'
h_report_migwrite	handler h_report_migwrite Allows the saving of daily and monthly counts in the database
hbmCcalc	handler for report_mig_char
interface_report_mig_char	interface for report_migPar class
hcalc	Internal handler for reg, class report_ge_weight-class.
currentstart_date,ref_timestep-method	Gets the starting date of a time step for an object of class ref_timestep-class
fun_aggreg_for_plot	returns a table where all components within the list calcdata are aggregated and formatted for plot
fun_char_spe	function used to remove special non utf8 character which cause the gtk interface to crash
hbmmCEcalc	Internal handler function
interface_report_mig_env	interface for report_migConditionEnv class
funboxplotreport_sample_char	Boxplots for ggplot2
funchartDC	Handler function to plot calendar like graph, internal use
plot,report_mig_interannual,missing-method	Plot method for report_mig_interannual
funplotreport_silver_eel	funplotreport_silver_eel
plot,report_species,missing-method	Plot method for report_species
print,report_dc-method	Method to print the command line of the object
hbmCplotquan	handler for plot
r_ann	Annual migration of yellow and silver eel for three fishways / counting devices at the Arzal dam (data from 1995 to 2016)
hbmmCEgraph	internal method for graphical interface
print,report_mig_mult-method	Method to print the command line of the object
plot,report_mig_env,missing-method	Plot method for report_mig_env
hexp	Internal handler for reg, class report_ge_weight-class.
houtreport_mig	handler to print the command line
houtreport_mig_mult	handler to print the command line
r_ann_adour	Annual migration of salmon in the Adour and tributaries
funpointreport_sample_char	Point graph from ggplot
r_mig_env	An object of class report_mig_env with data loaded
get_year	Generic method to get the years
hxtablereport_annual	xtable handler
hgraph_report_mig_interannual5	Function displaying comparison similar to hgraph_report_mig_interannual4 but using pointrange and geom_bar This function plots comparisons for periods of 1 week, 2 weeks, month
interface_graphique	Program launch, this function launches the GwidgetRgtk graphical interface to stacomi. To be able to run, some widgets (win, grouptotal, group...) are assigned in the user environment .GlobalEnv.
interface_report_silver_eel	An interface that calls the object to build the user interface
print,report_sample_char-method	Method to print the command line of the object
hbmCstat	This handler calls the generic method stat
r_mig_dc	Counting device operation for the video recording (Arzal dam, Vilaine, France).
interface_report_species	Interface for report_species class
hgraph_report_mig_interannual7	This function creates a cumulated area plot to highlight seasonal trends in migration. Data are calculated by 2 weeks period then centered and reduced
hplot	Internal handler for reg, class report_ge_weight-class.
r_mig_interannual	Daily glass eel and elver migration from 1984 to 2016 in the Sevre Niortaise
interface_report_df	interface for report_df class
getdateDebut,ref_timestep-method	Returns the starting date as character
r_mig_mult_ope	Counting operations for three different counting device in Arzal (Vilaine, France)
hplotbilesp	handler for plot internal use
interface_report_env	Interface for class conditionEnv
hsummarybilesp	handler for summary report_species, internal use
r_mig_ope	An object of class report_ope-class with data loaded
ref_parqual-class	Class "ref_parqual"
getvalue,ref_period-method	Returns the POSIXt value of a given name
getvalue	Generic method getvalue
load_stacomi	Internal function, tests the connection and if it works loads the stacomi interface
plot,report_mig,ANY-method	Plots of various type for report_mig.
h_report_dfdc	handler function used by the main interface
plot,report_mig_char,missing-method	plot method for report_mig_char
r_mig_df	Fishway operation for the vertical slot fishway (Arzal dam, Vilaine, France).
h_report_env	handler function used by the main interface
ref_parquan-class	Class "ref_parquan"
report_ope-class	Report on operations
ref_timestep_daily-class	Class "ref_timestep_daily"
hsummaryreport_migInterannuelle	Summary handler internal method
ref_year-class	Year reference class
report_sample_char-class	Class "report_sample_char"
report_mig_char-class	Migration report along with quantitative and qualitative characteristics
plot,report_sea_age,missing-method	Plots of various type for report_sea_age
plot,report_silver_eel,missing-method	Plots of various type for report_silver_eel
setasqualitative	Generic method to transform quantitative par into a qualitative one
h_report_migcalc	handler for calculations report_mig
model,report_ge_weight-method	model method for report_ge_weight' this method uses samples collected over the season to model the variation in weight of glass eel or yellow eels.
report_mig_env-class	Class "report_mig_env"
interface_report_ge_weight	interface for report_ge_weight class
h_report_miggraph	handler for h_report_miggraph
set_starting_date	Generic method to set the starting date
setasqualitative,report_mig_char-method	Turns a quantitative parameter into qualitative
summary,report_mig-method	summary for report_mig calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
progress_bar	Progress bar using a gtkdialog, the progress bar is assigned in envir_stacomi This progress bar has a button to close.
interface_report_mig	Interface for report_mig class, internal use, this function is called by a handler in the main graphical interface
setref_horodate,ref_horodate-method	Method to set the Horodate
plot,report_dc,ANY-method	Different plots for report_dc
plot,report_df,ANY-method	Different plots for report_df
h_report_species	handler function used by the main interface
plot,report_mig_mult,missing-method	Plots of various type for report_mig_mult
hbarplotreport_annual	Barplot handler
hplotreport_annual	plot handler
quitte	function used to clean the objects within the group and the graphs and also elements remaining in the envir_stacomi environment
hreg	Internal handler for reg, class report_ge_weight-class.
r_mig_interannual_vichy	Seasonality of salmon migration at the Vichy counting station (Loire)
plot,report_sample_char,missing-method	Plots of various type for reportcarlot
r_mig_mult	Anguilla migration at the Arzal station (report_mig_mult-class)
r_sample_char	Size of yellow and glass eel at the Arzal dam (Vilaine, France) in the fishway and main eel trapping ladder.
summary,report_mig_char-method	summary for report_mig_char
summary,report_mig_interannual-method	summary for report_mig_interannual provides summary statistics for the latest year (if silent=TRUE), or the year selected in the interface, if silent=FALSE. Mean, min and max are historical statistics with the selected year excluded from the historical dataset.
r_silver	Silver eel migration in the Somme
summary,report_mig_mult-method	summary for report_mig_mult calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
r_seaa	An object of class report_sea_age with data loaded
ref_checkbox-class	ref_checkbox referencial class
supprime,ref_coe-method	supprime method for "ref_coe" class
interface_report_sea_age	An interface that calls the object to build the user interface
interface_report_sample_char	An interface that calls the object to build the user interface
print,report_sea_age-method	Method to print the command line of the object
ref_dc-class	Class "ref_dc"
validity_ref_horodate	Validity check for ref_horodate
print,report_silver_eel-method	Method to print the command line of the object
ref_df-class	Class "ref_df"
model	Generic for prediction
plot,report_annual,missing-method	Plot method for report_annual
validity_year	Validity check for ref_year
supprime,report_mig_interannual-method	supprime method for report_mig_interannual class
print,report_df-method	Method to print the command line of the object
r_env	An object of class report_env with data loaded
xtable,report_mig_char-method	xtable function for report_mig_char-class create an xtable objet to be later used by the print.xtable method.
ref_taxa-class	Class "ref_taxa"
print,report_mig-method	Method to print the command line of the object
ref_textbox-class	ref_textbox referencial class
split_per_day	Create a dataframe suitable for charts per 24h and day
ref_list-class	Class "ref_list"
r_dc	Counting Device (DC) operation from 2000 to 2015 at the Arzal dam (Vilaine, France)
r_mig	Video counting of thin lipped mullet (Liza ramada) in 2015 in the Vilaine (France)
r_mig_char	Qualitative and quantitative parameters describing Salmon migration at Decize (Loire)
r_mig_mult_dc	Counting device operation for three different counting device in Arzal (Vilaine, France)
r_df	Overview of the fishway operation at Arzal in (Vilaine France).
ref_par-class	Class "ref_par"
report_annual-class	Class "report_annual"
r_mig_mult_df	Fishway operation at the Arzal Dam (Vilaine France) (3 Fishways in 2011)
ref_period-class	Class "ref_period" referential class
r_gew	Wet weight of glass eel from the trapping ladder (Arzal, Vilaine France)
ref_stage-class	Class "ref_stage"
report_df-class	Report on fishway operation
report_env-class	class report_env simple output of one or several environmental conditions...
ref_choice-class	Class "ref_choice"
ref_coe-class	Class "ref_coe"
stacomi	Function that loads the loginwindow, tests connection, and then destroys the window
report_species-class	Counts of number per taxa/stages
report_mig_mult-class	Migration reports for multiple DC / species / stages
report_mig_interannual-class	Class "report_mig_interannual"
ref_env-class	Class "ref_env"
ref_horodate-class	Class ref_horodate
set_starting_date,ref_timestep-method	Sets starting date from a character
summary,report_silver_eel-method	summary for report_silver_eel
ref_timestep-class	Class "ref_timestep"
summary,report_sample_char-method	summary for report_sample_char
summary,report_sea_age-method	summary for report_sea_age
summary,report_species-method	summary for report_species generate csv and html output in the user data directory
ref_timestepChar-class	Class "ref_timestepChar"
supprime,report_sea_age-method	supprime method for report_mig_interannual class
write_database	Generic method write_database
supprime	Generic method to delete entires from the database
report_silver_eel-class	Class "report_silver_eel"
write_database,report_mig-method	Command line method to write the daily and monthly counts to the t_bilanmigrationjournalier_bjo table
write_database,report_sea_age-method	Command line method to write the characteristic "sea age" (car_par_code='A124') into the tj_caracteristiquelot_car table in the user's scheme
report_sea_age-class	Class "report_sea_age"
report_dc-class	Class "report_dc" report du fonctionnement du dispositif de comptage
report_ge_weight-class	Trend of wet weight in glass eel
xtable,report_annual-method	xtable function for report_annual-class create an xtable objet but also assigns an add.to.column argument in envir_stacomi, for later use by the print.xtable method.
report_mig-class	Migration report for one DC, one species and one stage
stacomiR-package	stacomiR
stacomi_installed	Test that the program is installed.
summary,report_dc-method	summary for report_dc, write csv and html output, and prints summary statistics
summary,report_df-method	summary for report_df, write csv and html output, and prints summary statistics
vector_to_listsql	Transforms a vector into a string called within an sql command e.g. c('A','B','C') => in ('A','B','C')
write_database,report_ge_weight-method	Function to write data to the stacomi database for report_ge_weight-class
charge,ref_dc-method	Method to load the counting devices of the control station
calcmig	A data frame containing the default connection arguments. The program will use a file installed in c:/program files/stacomi but if not found will switch to this default value
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Vignettes of stacomiR

Name
stacomir.Rmd
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Details

Date	2018-09-24
License	GPL (>= 2)
URL	http://stacomir.r-forge.r-project.org/
BugReports	https://github.com/MarionLegrandLogrami/stacomiR/issues
Collate	'create_generic.R' 'data.R' 'fun_table_per_dis.R' 'fun_write_monthly.R' 'fungraph.R' 'fungraph_glasseel.R' 'funstat.R' 'funstat_daily.R' 'funtable.R' 'interface_report_annual.R' 'interface_report_dc.R' 'interface_report_df.R' 'interface_report_env.R' 'interface_report_ge_weight.R' 'interface_report_mig.R' 'interface_report_mig_char.R' 'interface_report_mig_env.R' 'interface_report_mig_interannual.R' 'interface_report_mig_mult.R' 'interface_report_sample_char.R' 'interface_report_sea_age.R' 'interface_report_silver_eel.R' 'interface_report_species.R' 'ref_checkbox.R' 'ref_choice.R' 'ref_coe.R' 'ref_dc.R' 'ref_df.R' 'ref_env.R' 'ref_horodate.R' 'ref_list.R' 'ref_par.R' 'ref_parqual.R' 'ref_parquan.R' 'ref_period.R' 'ref_stage.R' 'ref_taxa.R' 'ref_textbox.R' 'ref_timestep.R' 'ref_timestep_daily.R' 'ref_year.R' 'report_annual.R' 'report_dc.R' 'report_df.R' 'utilities.R' 'report_env.R' 'report_ge_weight.R' 'report_ope.R' 'report_mig.R' 'report_sample_char.R' 'report_mig_char.R' 'report_mig_mult.R' 'report_mig_env.R' 'report_mig_interannual.R' 'report_sea_age.R' 'report_silver_eel.R' 'report_species.R' 'setAs.R' 'stacomi.R'
LazyLoad	yes
LazyData	true
RoxygenNote	6.1.0.9000
NeedsCompilation	no
VignetteBuilder	knitr
Repository	CRAN
Repository/R-Forge/Project	stacomir
Repository/R-Forge/Revision	544
Repository/R-Forge/DateTimeStamp	2018-10-11 13:39:57
Date/Publication	2018-10-11 15:10:03 UTC
Packaged	2018-10-11 13:50:38 UTC; rforge

imports	dplyr , ggplot2 , graphics , grDevices , gWidgets , gWidgetsRGtk2 , Hmisc (>= 4.1-1) , intervals , lattice , lubridate , magrittr , mgcv , RColorBrewer , reshape2 , RGtk2 , RPostgreSQL , sqldf , stats , stringr , utils , xtable
suggests	knitr , rmarkdown , testthat , viridis
depends	methods , R (>= 3.5.0) , RODBC , stacomirtools
Contributors	Marion Legrand, Timothee Besse