stacomiR v0.5.4.2

0

Monthly downloads

0th

Percentile

Fish Migration Monitoring

Graphical outputs and treatment for a database of fish pass monitoring. It is a part of the 'STACOMI' open source project developed in France by the French Agency for Biodiversity (AFB) institute to centralize data obtained by fish pass monitoring. This version is available in French and English. See <http://stacomir.r-forge.r-project.org/> for more information on 'STACOMI'.

Functions in stacomiR

Name Description
calcule,report_mig_char-method Computes data to a standard format for the summary and plot methods.
calcule Generic method for calculations
charge,ref_par-method Loading method for Repar referential objects
charge,ref_parqual-method Loading method for Reparqual referential objects
charge,report_sample_char-method charge method for report_sample_char class
charge,report_sea_age-method Loads data and check that all choices in the graphical interface have been made.
charge_with_filter,ref_stage-method Loading method for ref_stage referential objects searching only those stages existing for a DC and a Taxon
charge_with_filter,ref_taxa-method Loading method for ref_taxa referential objects searching only taxa existing for a DC
charge,ref_checkbox-method Loading method for ref_checkbox referential objects
chargecsv chargecsv loads the informations stored in c:/program files/stacomi/calcmig.csv file
choice,ref_checkbox-method Choice method for ref_checkbox referential objects
choice_c,ref_env-method Command line interface to select a monitoring station
choice_c,ref_choice-method Choice_c method for refchoix referential objects
choice Generic method for choice (using the gwidget graphical interface)
choice_c,ref_horodate-method Command line
choice_c,ref_year-method choice_c method for ref_year referential from the command line
choice_c,report_annual-method command line interface for report_annual-class
choicemult,ref_horodate-method Multiple Choice method for ref_horodate referential objects, to put together with notebook widgets
calcule,report_ge_weight-method Calcule method for report_ge_weight
choicemult,ref_par-method Multiple Choice method for ref_par referential objects, internal use
colortable Builds a table with colors to merge with a dataframe for later use in ggplot. An initial check will be done on the name of the color vector. A data frame is built. It contains a column color which is a factor. The factor order match the order of the vector (not the alphabetical order of the colors).
calcule,report_mig-method Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel).
charge,ref_dc-method Method to load the counting devices of the control station
calcule,report_mig_interannual-method calcule method for report_mig_interannual
barplot,report_annual-method barplot method for object report_annual-class
connect,report_annual-method connect method for report_annual class this method performs the sum over the year attention this function does not count subsamples.
charge,ref_year-method Loading method for ref_year referential objects
connect,report_mig-method connect method for report_mig
charge,ref_df-method Loading method for DF referential objects
connect,report_mig_char-method connect method for report_mig_char
charge,report_annual-method charge method for report_annual class
currentstart_date Generic method for getting the beginning date for current time step
end_date,ref_timestep-method Gets the final horodate for an object of class ref_timestep-class
calcule,report_silver_eel-method Calculate individual silver eel parameters.
charge,report_mig-method Loads additional data on migration control operations, df (fishway) dc (counting device).
calcule,report_species-method calcule method for report_species
calcmig A data frame containing the default connection arguments. The program will use a file installed in c:/program files/stacomi but if not found will switch to this default value
charge,report_mig_char-method charge method for report_mig_char
choice,ref_df-method Graphical method to choose a fishway through the interface
fun_aggreg_for_plot returns a table where all components within the list calcdata are aggregated and formatted for plot
fun_char_spe function used to remove special non utf8 character which cause the gtk interface to crash
calcule,report_mig_mult-method #' Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel). This calculation is performed in a loop for all dc.
charge,ref_choice-method Loading method for Rechoice referential objects
charge,report_ge_weight-method charge method for report_ge_weight class
charge,report_env-method charge method for report_env class
charge,ref_coe-method loads the coefficients for the period defined in class
funboxDC function used for some lattice graph
charge,report_dc-method charge method for report_dc
funboxDF Internal use, rectangles to describe the DF work for report_df class, graphical interface handler
charge Generic method to load referentials
charge_complement,ref_parqual-method Loads an additional dataset this method is loaded to obtain the possible values of a qualitative parameter. Here data only contains one line
choice,ref_env-method Choice method for ref_env referential object
funplotreport_silver_eel funplotreport_silver_eel
choice,ref_textbox-method Choice method for ReTextBox referential objects
choice,ref_timestep-method Method to select timesteps from the graphical interface
charge,report_mig_mult-method charge method for report_mig_mult
charge,report_df-method charge method for report_df
charge,ref_parquan-method Loading method for Reparquan referential objects
charge_with_filter Generic method to load referentials, with filters from the parent object in the database
chargecomplement-methods Methods for Function chargecomplement
choice_c,ref_stage-method choice_c method for ref_stage
choice_c,ref_taxa-method choice_c method for ref_taxa
charge,report_ope-method charge method for report_ope
choice_c,report_mig_env-method command line interface for report_env class
choice_c,report_mig_interannual-method command line interface for report_mig_interannual class
funpointreport_sample_char Point graph from ggplot
funtableDF Table output for report_df class
choice_c,report_species-method command line interface for report_species-class
choice_c Generic method for manual choice using the command line
charge,ref_stage-method Loading method for ref_stage referential objects
calcule,report_sample_char-method Calculation for report_sample_char
charge,report_silver_eel-method charge method for report_silver_eel class
charge,report_species-method charge method for report_species
calcule,report_sea_age-method Split data according to the limits set in the limit1hm, and limit2hm arguments of the report_sea_age-class.
choice,ref_horodate-method Graphical interface
funtablereport_ge_weight Internal handler for reg, class report_ge_weight-class.
choice,ref_list-method Choice method for ref_list referential objects
choice,ref_timestep_daily-method Method to select timesteps from the graphical interface
charge,ref_env-method Loading method for ref_env referential object
fun_date_extraction This function extracts temporal characteristics from a dataframe
choice,ref_year-method choice method for ref_year referential
charge,ref_list-method Loading method for refliste referential objects
fun_report_mig_interannual statistics per time period
charge_complement Generic method to load additional data
h_report_mig_char handler function used by the main interface
choice,ref_stage-method Choice method for ref_stage referential objects
charge,ref_taxa-method Loading method for ref_taxa referential objects
h_report_mig_env handler function used by the main interface
h_report_mig_mult_graph handler for plot method in report_mig_mult class
choice_c,report_mig-method command line interface for report_mig class
charge_with_filter,ref_par-method Loading method for Repar referential objects searching only those parameters existing for a DC, a Taxa, and a stage
h_report_mig_multcalc handler for calculations
charge,report_mig_env-method charge method for report_mig_env class
charge,ref_textbox-method Loading method for ReTextBox referential objects
choice_c,report_mig_char-method command line interface for report_mig_char class
funbarchartDC Function to create a barchart (lattice) corresponding to the periods
h_report_silver handler function used by the main interface
funbarchartDF Handler for barchart for report_df class from the graphical interface
connect,report_dc-method connect method for report_dc
charge,report_mig_interannual-method loading method for report_mig_interannual class
h_report_size handler function used by the main interface
funout this function uses gfile, edits a text with info and changing colors
choice,ref_taxa-method Choice method for reftaxa referential objects with only one taxa selected
hgraph_report_mig_interannual Plot of all interannual from top to bottom
choice_c,ref_list-method Choice_c method for ref_list referential objects
choice_c,ref_par-method Command line interface to select a parameter
choice_c,report_env-method command line interface for report_env class
choice_c,report_ge_weight-method command line interface for report_ge_weight-class
hgraph_report_mig_interannual2 Plot of daily migrations
hgraph_report_mig_interannual5 Function displaying comparison similar to hgraph_report_mig_interannual4 but using pointrange and geom_bar This function plots comparisons for periods of 1 week, 2 weeks, month
choice_c,report_sea_age-method command line interface for report_sea_age class
charge_with_filter,ref_parqual-method Loading method for Reparqual referential objects searching only those parameters existing for a DC, a Taxon, and a stage
choice_c,report_silver_eel-method command line interface for report_silver_eel class
connect,report_df-method connect method for report_df
funplotreport_sea_age funplotreport_sea_age
charge_with_filter,ref_parquan-method Loading method for Reparquan referential objects searching only those parameters existing for a DC, a Taxon, and a stage
hgraph_report_mig_interannual7 This function creates a cumulated area plot to highlight seasonal trends in migration. Data are calculated by 2 weeks period then centered and reduced
choice_c,ref_dc-method Command line interface to select a counting device
choice_c,ref_df-method Command line interface to choose a fishway
choice,ref_choice-method Choice method for Rechoice referential objects
choice,ref_dc-method Graphical method to choose a fishway through the interface
connect,report_mig_mult-method connect method for report_mig_mult
get_year Generic method to get the years
choicemult Generic method for multiple choice (using the gwidget notebook for multiple choice)
choice,ref_par-method Choice method for ref_par referential objects
hplotreport_annual plot handler
getdateDebut,ref_timestep-method Returns the starting date as character
coef_durif Silvering index coefficients from Caroline Durif (2009) to predict silvering stage from morphological parameters
hreg Internal handler for reg, class report_ge_weight-class.
graphdate function used for some lattice graphs with dates
connect,report_sample_char-method connect method for report_sample_char
graphe-methods Methods for Function graphe
connect,report_ope-method connect method for report_ope
connect,report_sea_age-method connect method for report_sea_age
connect,report_silver_eel-method connect method for report_silver_eel
h_report_miggraph2 handler for h_report_miggraph2
connect,report_species-method connect method for report_species
choicemult,ref_choice-method Multiple Choice method for ref_choice referential objects, to put together with notebook widgets
choicemult,ref_dc-method choicemult, selection method for ref_dc allowing to select several DC
load_stacomi Internal function, tests the connection and if it works loads the stacomi interface
choice,ref_parqual-method Choice method for ref_parqual referential objects, internal use
fun_stage_durif Function to calculate the stages from Durif
model,report_ge_weight-method model method for report_ge_weight' this method uses samples collected over the season to model the variation in weight of glass eel or yellow eels.
fun_table_per_dis functions called in DF and DC
choice_c,ref_textbox-method Choice_c method for ReTextBox referential objects
end_date Generic method for getting the final date
h_report_migwrite handler h_report_migwrite Allows the saving of daily and monthly counts in the database
choice_c,ref_timestep_daily-method choice_c method for class ref_timestep_daily
plot,report_mig_env,missing-method Plot method for report_mig_env
envir_stacomi Environment where most objects from the package are stored and then loaded by the charge method
plot,report_mig_interannual,missing-method Plot method for report_mig_interannual
get_step_label Generic method to get the string value of time step
choice_c,report_dc-method command line interface for report_dc class
hbmCplotcrossed handler for plot
choicemult,ref_parqual-method Multiple Choice method for ref_parqual referential objects internal use
connect,report_env-method connect method for report_env class
choicemult,ref_stage-method Multiple Choice method for ref_stage referential objects
connect,report_ge_weight-method connect method for report_Poids_moyen
createmessage Generic method to forward outputs
hbmCplotqual handler for plot
current_end_date,ref_timestep-method Gets the ending date of a time step for an object of class ref_timestep-class
choice_c,report_df-method command line interface for report_df class
hxtablereport_annual xtable handler
r_dc Counting Device (DC) operation from 2000 to 2015 at the Arzal dam (Vilaine, France)
interface_graphique Program launch, this function launches the GwidgetRgtk graphical interface to stacomi. To be able to run, some widgets (win, grouptotal, group...) are assigned in the user environment .GlobalEnv.
funboxplotreport_sample_char Boxplots for ggplot2
choice_c,report_mig_mult-method command line interface for report_mig_mult class
r_df Overview of the fishway operation at Arzal in (Vilaine France).
choice_c,report_sample_char-method command line interface for report_sample_char class
interface_report_mig_interannual interface for report_mig_interannual class
get_year,ref_timestep-method Gets the year or a vector of years corresponding to the timestep ("ref_timestep") object
choicemult,ref_taxa-method Multiple Choice method for reftaxa referential objects, the graphical interface is built to allow for multiple choices. See load for method in the command line.
r_mig_interannual_vichy Seasonality of salmon migration at the Vichy counting station (Loire)
fun_weight_conversion returns a table where weights and number are calculated from number and weights respectively performs a query to collect the conversion coefficients
choicemult,ref_timestep-method Graphical interface for multiple choice method for PasdeTemps (used in report_mig_mult)
hTablereport_mig_mult handler function table
h_report_env handler function used by the main interface
h_report_dfdc handler function used by the main interface
hTablereport_mig handler for summary function, internal use calls functions funstat and funtable to build summary tables in html and csv files
fun_write_monthly This writes monthly data in t_reportmensuel_mens table
funchartDF Handler function to plot calendar like graph, internal use
funchartDC Handler function to plot calendar like graph, internal use
connect,report_mig_env-method connect method for report_mig_env class
connect,report_mig_interannual-method connect method for report_mig_interannual
h_report_ope handler function used by the main interface
r_mig_mult Anguilla migration at the Arzal station (report_mig_mult-class)
funtable function to print and save statistics in .csv and .html formats for report_mig and report_mig_mult class
hcalc Internal handler for reg, class report_ge_weight-class.
h_report_pigment_stages handler function used by the main interface
funtableDC FuntableDC create a table output for report_dc class
getvalue,ref_period-method Returns the POSIXt value of a given name
getvalue Generic method getvalue
hexp Internal handler for reg, class report_ge_weight-class.
h_report_mig handler function used by the main interface
interface_report_mig_mult graphical interface for report_mig_mult class
funstat Function to calculate statistics per month
fundensityreport_sample_char fundensityreport_sample_char uses ggplot2 to draw density plots
current_end_date Generic method for getting the ending date for current time step
h_report_mig_annual handler function used by the main interface
hgraph_report_mig_interannual3 Step plot with different years displayed on the same graph. One year can be highlighted against the others
h_report_mig_interannual handler function used by the main interface
plot,report_env,missing-method Plot method for report_env
plot,report_ge_weight,missing-method Plot method for report_ge_weight'
plot,report_sea_age,missing-method Plots of various type for report_sea_age
hgraph_report_mig_interannual4 Plot comparing the migration to the migration computed for all years available in the daily migration table. This function plots comparisons for periods of 1 week, 2 weeks, month
currentstart_date,ref_timestep-method Gets the starting date of a time step for an object of class ref_timestep-class
h_report_mig_mult handler function used by the main interface
h_report_species handler function used by the main interface
hbarplotreport_annual Barplot handler
interface_report_annual interface for report_annual class
funstat_daily function to create daily statistics
interface_report_dc interface for report_dc class
ref_parqual-class Class "ref_parqual"
interface_report_silver_eel An interface that calls the object to build the user interface
hbmCplotquan handler for plot
interface_report_species Interface for report_species class
funtablereport_sample_char table function
model Generic for prediction
funtablereport_sea_age table function
plot,report_silver_eel,missing-method Plots of various type for report_silver_eel
getdateDebut Generic method the get starting date
fun_report_mig_mult Calculate daily migration by simple repartition
hbmCstat This handler calls the generic method stat
plot,report_annual,missing-method Plot method for report_annual
houtreport_mig handler to print the command line
houtreport_mig_mult handler to print the command line
hsummarybilesp handler for summary report_species, internal use
r_mig_dc Counting device operation for the video recording (Arzal dam, Vilaine, France).
hsummaryreport_migInterannuelle Summary handler internal method
ref_parquan-class Class "ref_parquan"
interface_report_mig_char interface for report_migPar class
report_df-class Report on fishway operation
interface_report_mig_env interface for report_migConditionEnv class
report_env-class class report_env simple output of one or several environmental conditions...
r_seaa An object of class report_sea_age with data loaded
ref_list-class Class "ref_list"
r_mig_df Fishway operation for the vertical slot fishway (Arzal dam, Vilaine, France).
r_sample_char Size of yellow and glass eel at the Arzal dam (Vilaine, France) in the fishway and main eel trapping ladder.
ref_par-class Class "ref_par"
fun_report_mig_mult_overlaps Function to calculate daily migration using overlaps functions
print,report_mig_mult-method Method to print the command line of the object
getdbname Retrieves the dbname from a connection using "baseODBC"
h_report_dc handler function used by the main interface
print,report_sample_char-method Method to print the command line of the object
h_report_df handler function used by the main interface
report_annual-class Class "report_annual"
report_dc-class Class "report_dc" report du fonctionnement du dispositif de comptage
r_mig_mult_ope Counting operations for three different counting device in Arzal (Vilaine, France)
r_mig_ope An object of class report_ope-class with data loaded
funbarchart1DC Handler for barchart for report_df class from the graphical interface
fungraph Function for report_mig graphs including numbers DF DC operations
h_report_migcalc handler for calculations report_mig
funbarchart1DF Handler for barchart for report_df class from the graphical interface
hbilespcalc handler for calculation
hbmCcalc handler for report_mig_char
h_report_miggraph handler for h_report_miggraph
report_mig_char-class Migration report along with quantitative and qualitative characteristics
fungraph_glasseel Graph function for glass eel migration. Differs from fungraph as it does not draw the ggplot graph for month
hbmmCEcalc Internal handler function
plot,report_mig_mult,missing-method Plots of various type for report_mig_mult
hbmmCEgraph internal method for graphical interface
funtablereport_silver_eel table function
report_mig_env-class Class "report_mig_env"
houtDC handler to print the command line
houtDF handler to print the command line
summary,report_dc-method summary for report_dc, write csv and html output, and prints summary statistics
get_step_label,ref_timestep-method Gets the string value of time step
supprime,report_sea_age-method supprime method for report_mig_interannual class
ref_dc-class Class "ref_dc"
report_sea_age-class Class "report_sea_age"
report_silver_eel-class Class "report_silver_eel"
plot,report_sample_char,missing-method Plots of various type for reportcarlot
getnocurrent_step,ref_timestep-method Gets the current time step of an object of class ref_timestep-class
getnocurrent_step Generic method to get current time step
ref_df-class Class "ref_df"
vector_to_listsql Transforms a vector into a string called within an sql command e.g. c('A','B','C') => in ('A','B','C')
interface_report_ge_weight interface for report_ge_weight class
h_report_envgraph h_report_envgraph Internal method
split_per_day Create a dataframe suitable for charts per 24h and day
h_report_ge_weight handler function used by the main interface
h_report_mig_multgraph2 handler du calcul h_report_miggraph2
ref_taxa-class Class "ref_taxa"
h_report_mig_multgraph3 handler
ref_textbox-class ref_textbox referencial class
r_ann Annual migration of yellow and silver eel for three fishways / counting devices at the Arzal dam (data from 1995 to 2016)
report_species-class Counts of number per taxa/stages
set_starting_date,ref_timestep-method Sets starting date from a character
r_ann_adour Annual migration of salmon in the Adour and tributaries
stacomi Function that loads the loginwindow, tests connection, and then destroys the window
interface_report_mig Interface for report_mig class, internal use, this function is called by a handler in the main graphical interface
r_env An object of class report_env with data loaded
plot,report_mig,ANY-method Plots of various type for report_mig.
h_report_sample_char handler function used by the main interface
h_report_sea_age handler function used by the main interface
hplot Internal handler for reg, class report_ge_weight-class.
hplotbilesp handler for plot internal use
interface_report_df interface for report_df class
summary,report_silver_eel-method summary for report_silver_eel
interface_report_env Interface for class conditionEnv
r_gew Wet weight of glass eel from the trapping ladder (Arzal, Vilaine France)
r_silver Silver eel migration in the Somme
ref_checkbox-class ref_checkbox referencial class
plot,report_mig_char,missing-method plot method for report_mig_char
summary,report_df-method summary for report_df, write csv and html output, and prints summary statistics
interface_report_sample_char An interface that calls the object to build the user interface
write_database,report_ge_weight-method Function to write data to the stacomi database for report_ge_weight-class
write_database Generic method write_database
plot,report_species,missing-method Plot method for report_species
summary,report_species-method summary for report_species generate csv and html output in the user data directory
report_mig_interannual-class Class "report_mig_interannual"
print,report_sea_age-method Method to print the command line of the object
print,report_dc-method Method to print the command line of the object
interface_report_sea_age An interface that calls the object to build the user interface
xtable,report_annual-method xtable function for report_annual-class create an xtable objet but also assigns an add.to.column argument in envir_stacomi, for later use by the print.xtable method.
supprime Generic method to delete entires from the database
plot,report_dc,ANY-method Different plots for report_dc
print,report_silver_eel-method Method to print the command line of the object
ref_timestep-class Class "ref_timestep"
report_mig_mult-class Migration reports for multiple DC / species / stages
r_mig_interannual Daily glass eel and elver migration from 1984 to 2016 in the Sevre Niortaise
r_mig_env An object of class report_mig_env with data loaded
plot,report_df,ANY-method Different plots for report_df
ref_timestepChar-class Class "ref_timestepChar"
r_mig_mult_dc Counting device operation for three different counting device in Arzal (Vilaine, France)
r_mig_mult_df Fishway operation at the Arzal Dam (Vilaine France) (3 Fishways in 2011)
print,report_df-method Method to print the command line of the object
print,report_mig-method Method to print the command line of the object
report_ge_weight-class Trend of wet weight in glass eel
report_mig-class Migration report for one DC, one species and one stage
setasqualitative Generic method to transform quantitative par into a qualitative one
ref_env-class Class "ref_env"
progress_bar Progress bar using a gtkdialog, the progress bar is assigned in envir_stacomi This progress bar has a button to close.
quitte function used to clean the objects within the group and the graphs and also elements remaining in the envir_stacomi environment
stacomiR-package stacomiR
r_mig Video counting of thin lipped mullet (Liza ramada) in 2015 in the Vilaine (France)
summary,report_sample_char-method summary for report_sample_char
stacomi_installed Test that the program is installed.
ref_horodate-class Class ref_horodate
ref_choice-class Class "ref_choice"
r_mig_char Qualitative and quantitative parameters describing Salmon migration at Decize (Loire)
write_database,report_sea_age-method Command line method to write the characteristic "sea age" (car_par_code='A124') into the tj_caracteristiquelot_car table in the user's scheme
setref_horodate,ref_horodate-method Method to set the Horodate
ref_coe-class Class "ref_coe"
summary,report_sea_age-method summary for report_sea_age
ref_period-class Class "ref_period" referential class
write_database,report_mig-method Command line method to write the daily and monthly counts to the t_bilanmigrationjournalier_bjo table
ref_stage-class Class "ref_stage"
supprime,ref_coe-method supprime method for "ref_coe" class
supprime,report_mig_interannual-method supprime method for report_mig_interannual class
xtable,report_mig_char-method xtable function for report_mig_char-class create an xtable objet to be later used by the print.xtable method.
report_ope-class Report on operations
ref_timestep_daily-class Class "ref_timestep_daily"
report_sample_char-class Class "report_sample_char"
ref_year-class Year reference class
set_starting_date Generic method to set the starting date
setasqualitative,report_mig_char-method Turns a quantitative parameter into qualitative
summary,report_mig-method summary for report_mig calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
summary,report_mig_char-method summary for report_mig_char
validity_ref_horodate Validity check for ref_horodate
validity_year Validity check for ref_year
summary,report_mig_interannual-method summary for report_mig_interannual provides summary statistics for the latest year (if silent=TRUE), or the year selected in the interface, if silent=FALSE. Mean, min and max are historical statistics with the selected year excluded from the historical dataset.
summary,report_mig_mult-method summary for report_mig_mult calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
calcule,report_mig_env-method Calculations for migration in the class report_mig_env-class
No Results!

Vignettes of stacomiR

Name
stacomir.Rmd
No Results!

Last month downloads

Details

Date 2019-02-12
License GPL (>= 2)
URL http://stacomir.r-forge.r-project.org/
BugReports https://github.com/MarionLegrandLogrami/stacomiR/issues
Collate 'create_generic.R' 'data.R' 'fun_table_per_dis.R' 'fun_write_monthly.R' 'fungraph.R' 'fungraph_glasseel.R' 'funstat.R' 'funstat_daily.R' 'funtable.R' 'interface_report_annual.R' 'interface_report_dc.R' 'interface_report_df.R' 'interface_report_env.R' 'interface_report_ge_weight.R' 'interface_report_mig.R' 'interface_report_mig_char.R' 'interface_report_mig_env.R' 'interface_report_mig_interannual.R' 'interface_report_mig_mult.R' 'interface_report_sample_char.R' 'interface_report_sea_age.R' 'interface_report_silver_eel.R' 'interface_report_species.R' 'ref_checkbox.R' 'ref_choice.R' 'ref_coe.R' 'ref_dc.R' 'ref_df.R' 'ref_env.R' 'ref_horodate.R' 'ref_list.R' 'ref_par.R' 'ref_parqual.R' 'ref_parquan.R' 'ref_period.R' 'ref_stage.R' 'ref_taxa.R' 'ref_textbox.R' 'ref_timestep.R' 'ref_timestep_daily.R' 'ref_year.R' 'report_annual.R' 'report_dc.R' 'report_df.R' 'utilities.R' 'report_env.R' 'report_ge_weight.R' 'report_ope.R' 'report_mig.R' 'report_sample_char.R' 'report_mig_char.R' 'report_mig_mult.R' 'report_mig_env.R' 'report_mig_interannual.R' 'report_sea_age.R' 'report_silver_eel.R' 'report_species.R' 'setAs.R' 'stacomi.R'
LazyLoad yes
LazyData true
RoxygenNote 6.1.0.9000
NeedsCompilation no
VignetteBuilder knitr
Repository CRAN
Repository/R-Forge/Project stacomir
Repository/R-Forge/Revision 548
Repository/R-Forge/DateTimeStamp 2019-02-12 09:08:05
Date/Publication 2019-03-06 15:20:06 UTC
Packaged 2019-02-12 09:12:33 UTC; rforge

Include our badge in your README

[![Rdoc](http://www.rdocumentation.org/badges/version/stacomiR)](http://www.rdocumentation.org/packages/stacomiR)