starmie (version 0.1.2)

clumpp: Run the CLUMPP algorithms.

Description

Run the CLUMPP algorithms.

Usage

clumpp(Q_list, method = "greedy", iter = 100)

Arguments

Q_list

A list of of Q matrices.

method

The algorithm to use to infer the correct permutations. One of 'greedy' or 'greedyLargeK' or 'stephens'

iter

The number of iterations to use if running either 'greedy' or 'greedyLargeK'

Examples

# use multiple K=3 runs
cl_data <- exampleStructure("clumpp")
print(cl_data)
Q_list <- lapply(cl_data, getQ)
clumppy <- clumpp(Q_list)