getClusterAlleleFreqMat

a <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> or <code><a rd-options="" href="/link/admix?package=starmie&version=0.1.2" data-mini-rdoc="starmie::admix">admix</a></code> object.


Retrieve estimated within-cluster allele frequencies


Data structures and methods for  manipulating output of genetic population structure clustering algorithms.
'starmie' can parse output from 'STRUCTURE' (see <https://pritchardlab.stanford.edu/structure.html> for details) or
'ADMIXTURE' (see <https://www.genetics.ucla.edu/software/admixture/> for details). 'starmie' performs model selection via
information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.

Stuart Lee

starmie

Population Structure Model Inference and Visualisation

getClusterAlleleFreqMat function

a <code><a rd-options='' href='struct'>struct</a></code> or <code><a rd-options='' href='admix'>admix</a></code> object.

getClusterAlleleFreqMat: Retrieve estimated within-cluster allele frequencies

Description

Usage

Arguments