getD

getFitStats

getMCMC

getPosterior

a <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> object

structure_obj


getD Return the number of free parameters in STRUCTURE model


Data structures and methods for  manipulating output of genetic population structure clustering algorithms.
'starmie' can parse output from 'STRUCTURE' (see <https://pritchardlab.stanford.edu/structure.html> for details) or
'ADMIXTURE' (see <https://www.genetics.ucla.edu/software/admixture/> for details). 'starmie' performs model selection via
information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.

Stuart Lee

starmie

Population Structure Model Inference and Visualisation

getD function

<ul>
<li> <code>getPosterior</code>: Return the estimated log posterior probability (L_k) from a <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> object </li>
<li> <code>getFitStats</code>: Return the estimated mean and variance of estimated log-likelihood from a <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> object </li>
<li> <code>getMCMC</code>: Return non-burn in MCMC iterations.
</li>
</ul>

Functions

a <code><a rd-options='' href='struct'>struct</a></code> object

getD: Accessor methods for struct objects

Description

Usage

Arguments

Functions