getK

a <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> object  or <code><a rd-options="" href="/link/admix?package=starmie&version=0.1.2" data-mini-rdoc="starmie::admix">admix</a></code> object.


Retrieve the assumed number of populations from <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> or
<code><a rd-options="" href="/link/admix?package=starmie&version=0.1.2" data-mini-rdoc="starmie::admix">admix</a></code> objects.


Data structures and methods for  manipulating output of genetic population structure clustering algorithms.
'starmie' can parse output from 'STRUCTURE' (see <https://pritchardlab.stanford.edu/structure.html> for details) or
'ADMIXTURE' (see <https://www.genetics.ucla.edu/software/admixture/> for details). 'starmie' performs model selection via
information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.

Stuart Lee

starmie

Population Structure Model Inference and Visualisation

getK function

a <code><a rd-options='' href='struct'>struct</a></code> object  or <code><a rd-options='' href='admix'>admix</a></code> object.


Retrieve the assumed number of populations from <code><a rd-options='' href='struct'>struct</a></code> or
<code><a rd-options='' href='admix'>admix</a></code> objects.


Retrieve the assumed number of populations from <code><a rd-options="" href="/link/struct?package=starmie&version=0.1.2" data-mini-rdoc="starmie::struct">struct</a></code> or
<code><a rd-options="" href="/link/admix?package=starmie&version=0.1.2" data-mini-rdoc="starmie::admix">admix</a></code> objects.

getK: Retrieve the assumed number of populations from `struct` or `admix` objects.

Description

Usage

Arguments