starmie (version 0.1.2)

runStructure: Run STRUCTURE in current path

Description

Run STRUCTURE in current path

Usage

runStructure(path_to_structure, input_file, main_params, extra_params, out_prefix, n_K, n_replicates, n_cores)

Arguments

path_to_structure

path to structure binary executable (ie. /usr/bin/structure)

input_file

file name of input data

main_params

file name of mainparams file for STRUCTURE

extra_params

file name of extraparams file for STRUCTURE

out_prefix

prefix path/name for logging

n_K

number of assumed populations to try

n_replicates

number of replicates

n_cores

number of cores

Examples

## Not run: 
# input_file <- system.file("inst/extdata/microsat_testfiles", "locprior.str", package = "starmie")
# main_params <- system.file("inst/extdata/microsat_testfiles", "mainparams", package = "starmie")
# extra_params <-  system.file("inst/extdata/microsat_testfiles", "extraparams", package = "starmie")
# runStructure("structure", input_file, main_params, extra_params, "test", 5, 2, 2)
# ## End(Not run)