readVcf

Read variant call format (VCF) data and save in gData format. This is a
wrapper around vcfR::read.vcfR in the package <code>vcfR</code>. This package
needs to be installed for the function to work.

Fast single trait Genome Wide Association Studies (GWAS) following
the method described in Kang et al. (2010), <doi:10.1038/ng.548>.
One of a series of statistical genetic packages for streamlining the
analysis of typical plant breeding experiments developed by Biometris.

Bart-Jan van Rossum

statgenGWAS

Genome Wide Association Studies

Willem Kruijer

Fred van Eeuwijk

Martin Boer

Marcos Malosetti

Daniela Bustos-Korts

Emilie Millet

Joao Paulo

Maikel Verouden

Ron Wehrens

Choazhi Zheng

readVcf function

<dl><dt>vcfFile</dt>
<dd>The name of the vcf file. This can either be a plain text file
with extension (.vcf), or a gzipped file with extencion (.vcf.gz).</dd>
<dt>...</dt>
<dd>Further arguments passed to vcfR::read.vcfR.</dd></dl>

Arguments

Read variant call format data — readVcf

<dl>

<dt>vcfFile</dt>
<dd>The name of the vcf file. This can either be a plain text file
with extension (.vcf), or a gzipped file with extencion (.vcf.gz).</dd>


<dt>...</dt>
<dd>Further arguments passed to vcfR::read.vcfR.</dd>

</dl>

Read variant call format data

readVcf: Read variant call format data

Description

Usage

Value

Arguments

References