stranger package
stranger
is a framework for unsupervised anomalies detection that simplifies the user experience because the one does not need to be concerned with the many packages and functions that are required. It acts as a wrapper around existing packages ("a la Caret") and provides in a clean and uniform toolkit for evaluation explaination reporting routines. Hence the name stranger
taht stands for "Simple Toolkit in R for Anomalies Get Explain and Report".
stranger
provides wrapper around several packages that contain anomaly detection routines. One approach is called a weird
. Currently implemented methods (weirds) can be obtained by using weird_list
function. Underlying methods deal with: Angle-based Outlier Factor, autoencode, isolation Forest, kmeans (), k-Nearest Neighbour, Local Outlier Factor, Mahalanobis distance, Semi-robust principal components > distances, randomforest outlier metric.
Obviously, to be able to exploit stranger
, user will need to have various packages installed -- those ones containing computational routines.
stranger basics
Using stranger
, user has at disposal an analysis workflow.
- Data preparation with
crazyfy
: treating missing values, factors/charaters variables (methods usually require numeric values), deduplicate data (but keeping a matching table to restore all records), scaling (important!)... - Metrics computations (using weirds) is performed by
strange
(using one weird) orstranger
(using many weirds at once). - Once some metrics are available, one has to make them comparables (standardize) and eventually to aggregate them (stack). This is the purpose of
singularize
. - Based on all that is then available, once can derive anomalies (flags), which is done with
get_anomalies
- Merging back any object with source data (or any other data assumed there is an id) is possible with dedicated
fortify
methods.
In addition, those steps lead to objects having a specific S3 class and some visualization is possible thanks to dedicated plot
methods.
Guide to use stranger
package
We did write some vignette to accompany you in the discovery of anomalies using stranger
. We recommend to read vignettes in the following order:
- stranger for the impatient (vignette) will introduce you to quick workflows to get and visualize some anomalies.
- Working with weirds () introduce the usage of
stranger
function, the possibility tomerge
, stack (aggregate) methods and normalize metics withsingularize
and also derive your own anomalies based on manual filtering. - Stranger weirds methods (vignette) list all available weirds with some information on them.
- Extending stranger () is only suitable if you want to add some weirdness. In the case you want an additional weird method you can read this guide or contact us!.
Installation
stranger
is not currently available on CRAN. Install it from github:
# install.packages(devtools)
devtools::install_github("welovedatascience/stranger")
TODO
- Vignettes
- sample analyis (Sven)
- Extending stranger (Eric)
- Shiny small interface for anomalies exploration
- Add weird for H2O autoencode
- add install_weirdness to install all weird packages
- add
get_info
methods for every class - submit to CRAN