Learn R Programming

stranger package

stranger is a framework for unsupervised anomalies detection that simplifies the user experience because the one does not need to be concerned with the many packages and functions that are required. It acts as a wrapper around existing packages ("a la Caret") and provides in a clean and uniform toolkit for evaluation explaination reporting routines. Hence the name stranger taht stands for "Simple Toolkit in R for Anomalies Get Explain and Report".

stranger provides wrapper around several packages that contain anomaly detection routines. One approach is called a weird. Currently implemented methods (weirds) can be obtained by using weird_list function. Underlying methods deal with: Angle-based Outlier Factor, autoencode, isolation Forest, kmeans (), k-Nearest Neighbour, Local Outlier Factor, Mahalanobis distance, Semi-robust principal components > distances, randomforest outlier metric.

Obviously, to be able to exploit stranger, user will need to have various packages installed -- those ones containing computational routines.

stranger basics

Using stranger, user has at disposal an analysis workflow.

  • Data preparation with crazyfy: treating missing values, factors/charaters variables (methods usually require numeric values), deduplicate data (but keeping a matching table to restore all records), scaling (important!)...
  • Metrics computations (using weirds) is performed by strange (using one weird) or stranger (using many weirds at once).
  • Once some metrics are available, one has to make them comparables (standardize) and eventually to aggregate them (stack). This is the purpose of singularize.
  • Based on all that is then available, once can derive anomalies (flags), which is done with get_anomalies
  • Merging back any object with source data (or any other data assumed there is an id) is possible with dedicated fortify methods.

In addition, those steps lead to objects having a specific S3 class and some visualization is possible thanks to dedicated plot methods.

Guide to use stranger package

We did write some vignette to accompany you in the discovery of anomalies using stranger. We recommend to read vignettes in the following order:

  • stranger for the impatient (vignette) will introduce you to quick workflows to get and visualize some anomalies.
  • Working with weirds () introduce the usage of stranger function, the possibility to merge, stack (aggregate) methods and normalize metics with singularize and also derive your own anomalies based on manual filtering.
  • Stranger weirds methods (vignette) list all available weirds with some information on them.
  • Extending stranger () is only suitable if you want to add some weirdness. In the case you want an additional weird method you can read this guide or contact us!.

Installation

stranger is not currently available on CRAN. Install it from github:

# install.packages(devtools)
devtools::install_github("welovedatascience/stranger")

TODO

  • Vignettes
  • sample analyis (Sven)
  • Extending stranger (Eric)
  • Shiny small interface for anomalies exploration
  • Add weird for H2O autoencode
  • add install_weirdness to install all weird packages
  • add get_info methods for every class
  • submit to CRAN

Copy Link

Version

Install

install.packages('stranger')

Monthly Downloads

4

Version

0.3.3

License

GPL-2

Issues

Pull Requests

Stars

Forks

Maintainer

Eric Lecoutre

Last Published

March 12th, 2018

Functions in stranger (0.3.3)

get_anomalies

Retrieve anomalies
get_info

stranger object information
fortify.anomalies

Merge stranger/singular objects to a dataset
filter.stranger

dplyr methods
crazyfy

Data preparation before detection of strangers
add_id

Enrich source data with an ID
explore

Data Exploration plots
as.anomalies

Create a class anomalies from a (pre-filterd) stranger/singular
cor,stranger-method

Correlation for stranger objects
weird

Define a call to a weird function
strange

Computes anomaly metrics by invoking specific method(s) with associated sets of parameters
get_info.singular

singularized metrics information
lucky_odds

Quickly apply stanger full process flow to flag candidates anomalies applying one weird method
plot.stranger

Data visualizations of anomaly score locally around a specific data point
singularize

Normalize anomalies metrics and (eventually) stack them
BudgetUK

Budget Shares of British Households
weird_knn

weirdness wrappers for available anomalies detection methods
weirds_list

Provides the list of available methods