arlequin

read.arlequin

write.arlequin

filename of an input arlequin project (.arp) file.
<code>read.arlequin</code> can only read files with DataType of FREQUENCY, DNA, 
or MICROSAT.

file

a <a href="/link/?package=strataG&version=2.0.2" gtypes'="" data-mini-rdoc="strataG::"></a>'>gtypes object.

label for Arlequin project filename (.arp). If <code>NULL</code>, the 
gtypes description is used if present.

label

numeric or character designation of which locus to write for 
haploid data.

locus

Read an Arlequin-formatted project input file into a 
 <code>gtypes</code> object, or write an input file from a <code>gtypes</code> object.

A toolkit for analyzing stratified population genetic data.
Functions are provided for summarizing and checking loci
(haploid, diploid, and polyploid), single stranded DNA sequences,
calculating most population subdivision metrics, and running external programs
such as structure and fastsimcoal. The package is further described in
Archer et al (2016) <doi:10.1111/1755-0998.12559>.

Eric Archer

strataG

Summaries and Population Structure Analyses of Genetic Data

Brita Schneiders

Paula Adams

Sarina Fernandez

Warren Asfazadour

arlequin function

a <a href='<a href='gtypes'></a>'>gtypes</a> object.

arlequin: Read and Write Arlequin Files

Description

Usage

Arguments

References