structSSI (version 1.2.1)

chlamydiae: Chlamydiae Sub-Taxa of Global Patterns Data

Description

A phyloseq class object containing data on 16s rRNA diversity within the Chlamydiae bacteria taxon, originally appearing in PNAS.

Usage

data(chlamydiae)

Format

A phyloseq object

Details

A small subtree of the GlobalPatterns dataset, originaly available in the phyloseq package.

References

McMurdie P.J., Holmes S. (2013). phyloseq: A Bioconductor Package for Handling and Analysis of High-Throughput Phylogenetic Sequence Data. PLoS ONE 8(4): e61217. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061217.

Caporaso, J. G., et al. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. PNAS, 108, 4516-4522. PMCID: PMC3063599

This can be viewed/downloaded at: https://www.pnas.org/content/108/suppl.1/4516.short Sankaran, K and Holmes, S. structSSI: Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data. Journal of Statistical Software, 59(13), 1-21. 2014. https://jstatsoft.org/v59/i13/

Examples

if (requireNamespace("phyloseq", quietly = TRUE)) {
 data(chlamydiae)
}