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strvalidator (version 1.0.0)

Internal validation of forensic STR kits made easy with strvalidator.

Description

strvalidator provide tools that make it easier to perform an internal validation of a forensic short tandem repeat (STR) kit for human identification. The tools are developed to provide all necessary data to conform with the ENFSI guidelines for internal validation. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

274

Version

1.0.0

License

GPL-2

Issues

2

Pull Requests

0

Stars

6

Forks

3

Maintainer

Oskar Hansson

Last Published

January 23rd, 2014

Functions in strvalidator (1.0.0)

addColor

Add color information.
addData_gui

Add data GUI
calculateBalance_gui

Calculate Balance
calculateBalance

Calculate balance
calculateOL_gui

Bins Overlap
calculatePeaks

Count peaks
calculatePrecision_gui

Calculate Precision
calculateStutter

Calculate stutter
addDye_gui

Adds dye information
calculateDropout

Calculate drop-out events
calculateHeterozygous

Calculate heterozygous loci
combineBinsAndPanels

combine bins and panels files.
calculateDropout_gui

Calculate Dropout GUI
colNames

colNames
filterProfile

Filter out profiles from DNA results
calculateH

Calculate average peak height.
calculateOL

Off-ladder risk
export

Export
calculateOverlap_gui

Bins Overlap
detectKit

Detect kit
filterProfile_gui

Filter Profile GUI
calculateOverlap

Bins Overlap
guessProfile

Guess Profile
ggsave_gui

Save image
listObjects

List objects
calculatePeaks_gui

Calculate peaks GUI
calculateResultType_gui

Calculate Result Type GUI
plotPeaks_gui

Plot Peaks GUI
plotPrecision_gui

Plot Precision GUI
calculateResultType

Calculate result type
plotResultType_gui

Plot Result Type GUI
calculatePrecision

Calculate precision
saveObject

Save object
addMarker_gui

Adds dye information
set1

Typing data in 'GeneMapper' format
ref11

ESX17 Positive Control Profile
slim

Slim data frames
import_gui

Import from text file
import

Import GeneMapper.
calculateStutter_gui

Calculate Stutters
readPanelsFile

Read Panels file
export_gui

Export objects
cropData_gui

Crop or replace GUI
editData_gui

Edit or view data frames GUI
concatenate_gui

Concatenate two datasets
getDb

Get allele frequency database
getKit

Get kit
ref1

ESX17 Positive Control Profile
strValidator-package

Simplifies internal validation of forensic STR typing kits
sortMarker

Sort markers
plotDropout_gui

Plot Dropout GUI
guessProfile_gui

Guess profile
plotKit_gui

Plot kit marker ranges
plotBalance_gui

Plot Balance GUI
slim_gui

Slim data frames
tableStutter_gui

Guess profile
ref3

ESX17 example data for dropout analysis.
trim_gui

Trim data GUI
readBinsFile

Read Bins file
checkSubset

check subset
set4

ESX17 example data for dropout analysis.
modelDropout_gui

model and plot drop-out events
makeKit_gui

Make kit GUI
tableStutter

Table stutter
set3

ESX17 example data for dropout analysis.
ref2

ESX17 example data
loadPackage

Load packages
set2

ESX17 example data
calculateH_gui

Calculate H GUI
plotStutter_gui

Plot Stutter GUI
addMarker

Add missing markers.
ref4

ESX17 example data for dropout analysis.
checkSubset_gui

Check subsetting of a dataset
calculateHeterozygous_gui

Calculate Heterozygous GUI
trim

Trim data
addData

Adds new data columns to a data frame
strvalidator

GUI for STR Validator