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strvalidator (version 1.2.0)

Internal validation of forensic STR kits made easy with strvalidator.

Description

strvalidator is an open source platform for validation and process control. It provide tools that make it very easy to perform an internal validation of a forensic short tandem repeat (STR) kit for human identification. The tools are developed to provide all necessary data to conform with the ENFSI guidelines for internal validation. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

274

Version

1.2.0

License

GPL-2

Issues

2

Pull Requests

0

Stars

6

Forks

3

Maintainer

Oskar Hansson

Last Published

May 12th, 2014

Functions in strvalidator (1.2.0)

addData

Adds new data columns to a data frame
calculateCapillary_gui

Capillary balance
calculateCapillary

Calculate capillary balance
calculateH

Calculate average peak height.
calculateResultType_gui

Calculate Result Type GUI
calculateStutter_gui

Calculate Stutters
cropData_gui

Crop or replace GUI
calculateResultType

Calculate result type
combineBinsAndPanels

combine bins and panels files.
plotDropout_gui

Plot Dropout GUI
export_gui

Export objects
calculateHeterozygous_gui

Calculate Heterozygous GUI
readPanelsFile

Read Panels file
plotStutter_gui

Plot Stutter GUI
ref11

ESX17 Positive Control Profile
concatenate_gui

Concatenate two datasets
checkSubset_gui

Check subsetting of a dataset
ref2

SGMPlus example data
set3

ESX17 example data for dropout analysis.
slim

Slim data frames
saveObject

Save object
tableCapillary

Table capillary
plotDistribution_gui

Plot Distribution GUI
trim_gui

Trim data GUI
tableCapillary_gui

Guess profile
tablePrecision_gui

Calculate Precision
calculateBalance_gui

Calculate Balance
addSize_gui

Adds size information
calculateDropout_gui

Calculate Dropout GUI
calculatePeaks

Count peaks
ggsave_gui

Save image
plotCapillary_gui

Plot Capillary Balance GUI
ref3

ESX17 example data for dropout analysis.
filterProfile_gui

Filter Profile GUI
colNames

colNames
addMarker

Add missing markers.
addDye_gui

Adds dye information
addData_gui

Add data GUI
addMarker_gui

Adds dye information
addSize

Add color information.
calculateDropout

Calculate drop-out events
calculateH_gui

Calculate H GUI
calculatePeaks_gui

Calculate peaks GUI
calculateOverlap_gui

Bins Overlap
calculateOverlap

Bins Overlap
calculateHeterozygous

Calculate heterozygous loci
checkSubset

check subset
checkDataset

Plot Stutter GUI
getKit

Get kit
editData_gui

Edit or view data frames GUI
filterProfile

Filter out profiles from DNA results
guessProfile_gui

Guess profile
makeKit_gui

Make kit GUI
plotPrecision_gui

Plot Precision GUI
loadPackage

Load packages
ref1

ESX17 Positive Control Profile
modelDropout_gui

model and plot drop-out events
readBinsFile

Read Bins file
ref4

ESX17 example data for dropout analysis.
import

Import GeneMapper.
set2

SGMPlus example data
set1

Typing data in 'GeneMapper' format
tableBalance_gui

Table balance
strvalidator

GUI for STR Validator
sortMarker

Sort markers
getDb

Get allele frequency database
plotBalance_gui

Plot Balance GUI
tablePrecision

Calculate precision
addColor

Add color information.
export

Export
tableBalance

Table stutter
tableStutter_gui

Table stutter
trim

Trim data
tableStutter

Table stutter
guessProfile

Guess Profile
listObjects

List objects
plotPeaks_gui

Plot Peaks GUI
calculateBalance

Calculate balance
calculateOL_gui

Bins Overlap
import_gui

Import from text file
calculateOL

Off-ladder risk
calculateStutter

Calculate stutter
detectKit

Detect kit
plotKit_gui

Plot kit marker ranges
plotResultType_gui

Plot Result Type GUI
set4

ESX17 example data for dropout analysis.
slim_gui

Slim data frames
strValidator-package

Simplifies internal validation of forensic STR typing kits